EWM25297.1, cds5376 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|585107047|gb|EWM25297.1| (splicing factor 3a [Nannochloropsis gaditana]) HSP 1 Score: 1117.84 bits (2890), Expect = 0.000e+0 Identity = 546/546 (100.00%), Postives = 546/546 (100.00%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL Sbjct: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|553180466|ref|XP_005853408.1| (splicing factor 3A subunit 3 [Nannochloropsis gaditana CCMP526] >gi|422295652|gb|EKU22951.1| splicing factor 3A subunit 3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1114.75 bits (2882), Expect = 0.000e+0 Identity = 545/546 (99.82%), Postives = 545/546 (99.82%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYL SFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL Sbjct: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKKNAAWARYVHNLYNYLHSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|298710033|emb|CBJ31751.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 468.774 bits (1205), Expect = 2.681e-157 Identity = 276/567 (48.68%), Postives = 355/567 (62.61%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTP--KWDYQTYLSRLADFSVVPAGKK--NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWP-------VPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKK----------QCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LERAR HED+E YE I+ LE KPRT KERV QQHR++NL + RS+ L IYED G+M+EE+A++RG+ +FY R+ YH HP +PV P ++ E E +V FSGEE++GK+ DL + + LPQ + DY +L L F +P +K A+A ++ +L YL F+ RTQPL++++E+L G+ D ++FE W+AG LPG W A + GA + +DL+ F A EL LGMDRLK L+A+G+KCGGTLE+RA RLF+ KGKK EEID K + SNG G G D G Q A E ++ L+ EV + +E+TK+ V+KK TRT EE + E+++EE+G LPE +E+EEEE DE+GPIYNPLNLPLG+DGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHAHGMRCL IPNTKHFHDI I+DA LY +IK+ L E ++ E EE+ED EGNVLNRRT++DLARQGL+ Sbjct: 1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVL-GDTD-----------SSFEEAWEAGTLPG-WTSGRAAAAAAAAAAAGKGGAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEID------QKLKAKGKKEGKGVSNGVAPGHGADPNANGPAGGGGGRGGGKEERRKQLAALETKVKALL-EVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPE-------FNEEEEEESDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 540
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|901797759|gb|KMZ59769.1| (Splicing factor 3A subunit 3, putative, expressed [Zostera marina]) HSP 1 Score: 385.185 bits (988), Expect = 5.179e-125 Identity = 224/556 (40.29%), Postives = 325/556 (58.45%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHPDVPV---KHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKK-NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLA-GNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA HE++E E +V L+ +P + +ER++Q HRV N+IE + ++ L IYEDV G KEE++ L G+ A F +FY ++ ++YH++HP V + EPR+ FSGEE FG+YLD+ + + + +Y ++L + F + + K ++ Y++ L YL+SF QRT+PL +V + K E FE LW GK+ GW A E+ +DL + T +EL +G ++LK L ALG+K GGT+++RA RLF TK K E++D K A G+G ++K G SN +G + A E +I L E+L+E++ TK+ +EKKQ T EE E E E+ ++ E E +DED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRAF+RHF+EWRH HGMRCL IPN K+F++IT+I+++ L++RI+ + + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRAAHEEVERMERLVVQDLQREPVSGRERLFQNHRVRNMIETVVTTTEKLVNIYEDVDGARKEEISVLGGQVASGTNLFSTFYDKLKEIRDYHRRHPTAYVLDASEEYEEMLKEEPRIEFSGEEAFGRYLDMHELYNMYINSKFGKQIEYSSFLETFSQFQKIASNLKLTRQYSDYLNYLLEYLISFFQRTEPLQDVGRMFS------------KVETEFEELWTDGKM-SGWECKAMNNENIPSQESL--IDLDYYNTVEELMEVGPEKLKEALAALGLKVGGTVKQRADRLFLTKDKPLEQLDRKYFAKGSGVFQNK----GSASNSKDKG-------------SMRFIALMECKIQKLC-ELLKEIIIQTKENIEKKQALTYEEMEAEREDED------VQAESESDDEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLNIPNNKNFNEITSIEESKKLWERIQARQGVNKWRPDLEEEYEDREGNIFNKKTYTDLVRQGLI 509
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|698520651|ref|XP_009757142.1| (PREDICTED: splicing factor 3A subunit 3 [Nicotiana sylvestris] >gi|698520653|ref|XP_009757143.1| PREDICTED: splicing factor 3A subunit 3 [Nicotiana sylvestris]) HSP 1 Score: 380.178 bits (975), Expect = 4.250e-123 Identity = 229/556 (41.19%), Postives = 320/556 (57.55%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEA----EPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPA-GKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA+HE++E E +V L+ +P T K+R+ Q HRV N+IEQI + L IYED G K+E+A L G+ A F +FY R+ +EYH++HP V E EP++ FSGEE G+YLDL E+Y + +Y YL + +P K + Y+ L YL+ F +RT+PL +++ I K + FE W GK+ G W +Q G +N +DL + T +EL + G D+LK L ALG+K GGT+++RA RLF TK E++D K A G +K + G P VG D K+ A E +I L ++L E + TK+ VEKKQ T EE E E +++ ++ E E ++ED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRA++RHF+EWRH HGMRCL IPNTK+F++IT+I++A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRASHEEVERLERLVVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVDIYEDKDGARKDEIAALGGQTATGTNIFSAFYDRLKEIREYHRRHPAARVVIDASDDYEQLLKEEPQIEFSGEEGSGRYLDLHELFNEYYNSKFGARIEYTAYLDVFSQPQKIPCKAKSTRPYREYLQKLLEYLIYFFERTEPLQDLDRIFS------------KVTSEFEEEWTIGKVEG-WENSSQENG--SAPQNHTAIDLNSYSTVEELMIEGPDKLKEALGALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFA-KGSRKPEQNGVMPAPQ-----VG----------DDVKEIALMEAKIRKLC-DLLDETIVRTKENVEKKQALTYEEMEAEREEDD------VQAESESDEEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQEKQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 510
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|1025191665|ref|XP_016475308.1| (PREDICTED: splicing factor 3A subunit 3-like [Nicotiana tabacum] >gi|1025191668|ref|XP_016475309.1| PREDICTED: splicing factor 3A subunit 3-like [Nicotiana tabacum]) HSP 1 Score: 380.178 bits (975), Expect = 5.814e-123 Identity = 229/556 (41.19%), Postives = 320/556 (57.55%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEA----EPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVP-AGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA+HE++E E +V L+ +P T K+R+ Q HRV N+IEQI + L IYED G K+E+A L G+ A F +FY R+ +EYH++HP V E EP++ FSGEE G+YLDL E+Y + +Y YL + +P K + Y+ L YL+ F +RT+PL +++ I K + FE W GK+ G W +Q G +N +DL + T +EL + G D+LK L ALG+K GGT+++RA RLF TK E++D K A G +K + G P VG D K+ A E +I L ++L E + TK+ VEKKQ T EE E E +++ ++ E E ++ED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRA++RHF+EWRH HGMRCL IPNTK+F++IT+I++A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRASHEEVERLERLVVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVDIYEDKDGARKDEIAALGGQTATGTNIFSAFYDRLKEIREYHRRHPAARVVIDASDDYEQLLKEEPQIEFSGEEGSGRYLDLHELFNEYYNSKFGARIEYTAYLDVFSQPQKIPRKAKSTRPYREYLQKLLEYLIYFFERTEPLQDLDRIFS------------KVTSEFEEEWTIGKVEG-WENSSQENG--SAPQNHTAIDLNSYSTVEELMIEGPDKLKEALGALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFA-KGSRKPEQNGVMPAPQ-----VG----------DDVKEIALMEAKIRKLC-DLLDETIVRTKENVEKKQALTYEEMEAEREEDD------VQAESESDEEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQEKQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 510
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|697130347|ref|XP_009619235.1| (PREDICTED: splicing factor SF3a60 homolog [Nicotiana tomentosiformis] >gi|697130349|ref|XP_009619236.1| PREDICTED: splicing factor SF3a60 homolog [Nicotiana tomentosiformis]) HSP 1 Score: 379.407 bits (973), Expect = 9.053e-123 Identity = 229/556 (41.19%), Postives = 321/556 (57.73%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEA----EPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVP-AGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA+HE++E E +V L+ +P T K+R+ Q HRV N+IEQI + L IYED G K+E+A L G+ A F +FY R+ +EYH++HP V E EP++ FSGEE G+YLDL E+Y + +Y YL + +P K + Y+ L YL+ F +RT+PL +++ I K + FE W GK+ G W +Q G +N +DL + T +EL + G D+LK L ALG+K GGT+++RA RLF TK E++D K A G +K + G P + VG D K+ A E +I L ++L E + TK+ VEKKQ T EE E E +++ ++ E E ++ED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRA++RHF+EWRH HGMRCL IPNTK+F++IT+I++A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRASHEEVERLERLVVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVDIYEDKDGARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVIDASDDYEQLLIEEPQIEFSGEEGSGRYLDLHELFNEYYNSKFGARIEYTAYLDVFSQPQKIPRKAKSTRPYREYLQKLLEYLIYFFERTEPLQDLDRIFS------------KVTSEFEEEWTIGKVEG-WENNSQENG--SAPQNHTVIDLNSYSTVEELTIEGPDKLKEALGALGLKTGGTIQQRAERLFFTKHTPLEKLDRKHFA-KGSRKPEQNGVMPAAQ-----VG----------DDVKEIALMEAKIRKLC-DLLDETIVRTKENVEKKQALTYEEMEAEREEDD------VQAESESDEEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQEKQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 510
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|565367837|ref|XP_006350561.1| (PREDICTED: splicing factor 3A subunit 3 [Solanum tuberosum]) HSP 1 Score: 378.252 bits (970), Expect = 3.106e-122 Identity = 232/560 (41.43%), Postives = 329/560 (58.75%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHP------DVPVKHHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVP-AGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGA--ENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA+HE++E +E IV L+ +P T K+R+ Q HRV N+IEQI + L IYED G K+E+A L G+ A F +FY R+ +EYH++HP D ++ ++EE P++ FSGEE G+YLDL E+ +Y YL+ ++ +P K + Y+ L YL+ F +RT+PL +++ I K + FE W GK+ G W + G+E G+ EN +DL + TA+EL V+G ++LK L ALG+K GGT+++RA RLF TK E++D K A +K P NG V T G K+ A E +I L ++L E + T++ VEKKQ T EE E E +++ ++ E E +DED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRA++RHF+EWRH HGMRCL IPNTK+F++IT+I++A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRASHEEVERFERLIVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVDIYEDKDGARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARAIIDTGDEYEQLLKEE--PQIEFSGEEGSGRYLDLHELFNEYINSKFGEPIEYTAYLNVFSEPQKIPHKAKTTRQYLEYLQKLLEYLVYFFERTEPLQDLDRIFS------------KVTSEFEEEWTLGKVEG-W----ENSGQENGSAPENQTVIDLDYYSTAEELMVVGPEKLKEALGALGLKTGGTIQQRAERLFLTKNISLEKLDRKHFAKGSRK--------PEQNG---VVATPHVGDV------KEIALLEAKIRRLC-DLLDETIVRTRENVEKKQALTYEEMEAEREEDD------VQAESESDDEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKLLWERIQERQGVNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 509
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|1025410382|ref|XP_016439391.1| (PREDICTED: splicing factor 3A subunit 3-like [Nicotiana tabacum] >gi|1025410386|ref|XP_016439392.1| PREDICTED: splicing factor 3A subunit 3-like [Nicotiana tabacum]) HSP 1 Score: 377.096 bits (967), Expect = 8.287e-122 Identity = 228/556 (41.01%), Postives = 319/556 (57.37%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATLRGRDA-----FPSFYARVDHAKEYHQKHPDVPVKHHPPVQEEA----EPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVP-AGKKNAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE RA+HE++E E +V L+ +P T K+R+ Q HRV N+IEQI + L IYED G K+E+A L G+ A F +FY R+ +EYH++HP V E EP++ FSGEE G+YLDL E+Y + +Y YL + +P K + Y+ L YL+ F +RT+PL +++ I K + FE W GK+ G W +Q G +N +DL + T +EL + G D+LK L ALG+K GGT+++RA R F TK E++D K A G +K + G P VG D K+ A E +I L ++L E + TK+ VEKKQ T EE E E +++ ++ E E ++ED++ IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRA++RHF+EWRH HGMRCL IPNTK+F++IT+I++A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRASHEEVERLERLVVKDLQTEPATNKDRLHQSHRVRNMIEQIIDTTHKLVDIYEDKDGARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRRHPAARVVIDASDDYEQLLIEEPQIEFSGEEGSGRYLDLHELFNEYYNSKFGARIEYTAYLDVFSQPQKIPRKAKSTRPYREYLQKLLEYLIYFFERTEPLQDLDRIFS------------KVTSEFEEEWTIGKVEG-WENNSQENG--SAPQNHTVIDLNSYSTVEELTIEGPDKLKEALGALGLKTGGTIQQRAERFFLTKHTPLEKLDRKHFA-KGSRKPEQNGVMPAPQ-----VG----------DDVKEIALMEAKIRKLC-DLLDETIVRTKENVEKKQALTYEEMEAEREEDD------VQAESESDEEDQQ--------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKQLWERIQEKQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 510
BLAST of EWM25297.1 vs. NCBI_GenBank
Match: gi|294462630|gb|ADE76861.1| (unknown [Picea sitchensis]) HSP 1 Score: 375.555 bits (963), Expect = 2.476e-121 Identity = 234/554 (42.24%), Postives = 319/554 (57.58%), Query Frame = 0 Query: 1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDVHGTMKEELATL-----RGRDAFPSFYARVDHAKEYHQKHPDVPVK--HHPPVQEEAEPRVSFSGEEVFGKYLDLQASHMEFYALPQTPKWDYQTYLSRLADFSVVPAGKK-NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPAQGGGEEKGAENTKEVDLRGFRTAKELEVLGMDRLKAGLKALGMKCGGTLEERAARLFATKGKKKEEIDPKLLAGNGKKKSKAEGNGPTSNGNGQGVGTDKEGGKGGEDGKKQCARWEFRIDLLVKEVLREVVEATKKFVEKKQTRTKEETETELRQEEEGLLPELRGEGEEEDEDEEEEEDEDGPIYNPLNLPLGYDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAHGMRCLKIPNTKHFHDITTIKDALALYDRIKEQLKGEVYDAEVEEEFEDSEGNVLNRRTFQDLARQGLL 546 MS LE R HE++E E IV L+ +P T KER+ Q HRV N+++ I ++ L +YED + K+E+A L G++ F +FY R+ +EYH++HP V P + EPRV FSGEE FG+YLD+ + E+ DY +L +P K + Y +L YL+SF QRTQPL ++++I K EA FE W AG + GW G G+ ++ +DL + + EL LG ++LK L ALG+K GGT+++RA RLF TK EE+D +K A+G+ P++ TD E + K+ A E ++ LV E L E +E TK VEKKQ T EE E E EEE + E E ++ED IYNPL LP+G+DGKPIPYWLYKLHGLG E+KCEICGNHSYWGRRAF+RHF+EWRH HGMRCL IPNTK+F++IT+IK+A L++RI+E+ + ++EEE+ED EGN+ N++T+ DL RQGL+ Sbjct: 1 MSSTLLEVTRGAHEEVERLERLIVKDLQREPETNKERMHQNHRVRNMVDAIMSTTQKLIEVYEDSDHSRKDEIAALGGQGVSGQNVFSAFYDRLKEIREYHRRHPIARVVDLEDPEELLKEEPRVEFSGEEAFGRYLDMHELYNEYVNSKFGQLIDYAAFLEEFPQTHNIPRTHKLTRQYKEYSRHLLEYLVSFFQRTQPLQDLDKIFS------------KVEAEFEEHW-AGGMVQGWEDKGLGNGQPSTIQDF--IDLDYYSSVDELVELGPEKLKQALAALGLKTGGTVQQRAERLFLTKVTPLEELD---------RKHFAKGSRPSARR------TDDEILQLT--ASKEVALMEVKMKRLV-EFLHETLEETKANVEKKQALTYEEMEAE--------------REEEEIQAESESDEEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAKFLWERIQERQGLNKWRPDLEEEYEDQEGNIYNKKTYTDLQRQGLI 507 The following BLAST results are available for this feature:
BLAST of EWM25297.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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