EWM25325.1, cds5352 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|585107081|gb|EWM25325.1| (mitochondrial carrier family [Nannochloropsis gaditana]) HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE Sbjct: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|553186445|ref|XP_005854420.1| (mitochondrial carrier family [Nannochloropsis gaditana CCMP526] >gi|422294646|gb|EKU21946.1| mitochondrial carrier family [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 474.167 bits (1219), Expect = 1.324e-167 Identity = 237/271 (87.45%), Postives = 237/271 (87.45%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECL YEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE Sbjct: 51 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECL----------------------------------YEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 287
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|298707006|emb|CBJ29814.1| (carnitine/acylcarnitine carrier protein [Ectocarpus siliculosus]) HSP 1 Score: 239.58 bits (610), Expect = 1.441e-75 Identity = 125/272 (45.96%), Postives = 169/272 (62.13%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKR----ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIP 265 M G+ S YRGLLSP AG+G FA+SF+ YG +RF RK D E+ L E +A+G +AG + SP R +F+R+K+VMQVR G PY WSG C LVR+EG+ +GLFRG+++T LRE+ Q A+YYP YE+ + ++A + SG SS P L +LAGG+AG WLPP YCLDV+K+R+QSA PGVY WDC +K+ + EG V FRGL ++++RAFP++ +F+GYETT+ L E P Sbjct: 1 MAAHEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRRRKEDGGGGGSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVR--VGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVT----KDLLARRSTSGKSSVPE--------------PALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTRENCP 252
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|298707024|emb|CBJ29832.1| (carnitine/acylcarnitine carrier protein [Ectocarpus siliculosus]) HSP 1 Score: 182.57 bits (462), Expect = 1.910e-53 Identity = 105/219 (47.95%), Postives = 140/219 (63.93%), Query Frame = 0 Query: 40 RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258 R+ +LTL E +GAWAG++ +P RQ+FER+K VMQVR+ G + PY WSG C+V LVR+EG+ GL RG+ AT LRE QF +YYP YE+ + + + + S++ P P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY V DC K+ + EG+ V FRGL A++RAFP++ +FLGYETT+ L Sbjct: 17 REAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEI------------------AKDYFLPPDRTSTAVP-EPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 214
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|255085706|ref|XP_002505284.1| (mitochondrial carrier family, partial [Micromonas commoda] >gi|226520553|gb|ACO66542.1| mitochondrial carrier family, partial [Micromonas commoda]) HSP 1 Score: 140.198 bits (352), Expect = 1.469e-36 Identity = 102/272 (37.50%), Postives = 137/272 (50.37%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSP-----------------ARQIFERIKSVMQVRKAAGGADKPP--YRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYET 253 M REG ++ LYRG+ +P +G+ A++F + + R R GE+ SG + LL+ P R ER+K+V QV +++ G K P YR + L ++ GL G F G AT RE+PQ AVY+ Y+ A +K A+G + IV LAGG AG VQW+ Y LDV+KSRMQ+ PG Y+ DCA KS + EG GVF RGL +AL+RAFPL+A IFL ET Sbjct: 43 MQREGPMA-LYRGIGAPMVAYGLINAVAFTTHTEVVRLLR----------GELGGSGG-SPLLKDPYLIGLAGGAAAGFTSSFVRGPAERVKTVQQVAESSCGTGKVPEKYRGTIRTAATLAKEHGLLKGWFTGTGATVAREIPQCAVYFLTYDSIRHACEK------AAGPGYETAGIV----------------LAGGSAGVVQWVAT-YPLDVIKSRMQAFPPGTYNGFLDCAMKSLRAEGPGVFVRGLEMALLRAFPLHASIFLTCET 279
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|145343070|ref|XP_001416289.1| (MC family transporter: carnitine/acylcarnitine [Ostreococcus lucimarinus CCE9901] >gi|144576514|gb|ABO94582.1| MC family transporter: carnitine/acylcarnitine [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 140.969 bits (354), Expect = 1.986e-36 Identity = 99/254 (38.98%), Postives = 132/254 (51.97%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFA--GYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYE 252 +V + G LYRGL +P +G A++F+ Y + + G TL + SGA AGL+ S R ER+K++ QV D YR + L R+ G+ G+F G AT RE+PQ AVY+ Y+ R M G + ++ PS+ ++LAGG AG VQWL Y LDV KSR+Q+A PGVY V DCA KS +EG V FRGL +AL+RAFPL+A IF E Sbjct: 61 LVAQDGARGLYRGLTAPMLAYGAINAVAFSTNAYVRDSIEEAFGAEAASTTLAGVV-SGASAGLVSSFVRGPAERLKTIQQVVDC----DSGRYRSATSTAFTLAREHGVMKGIFAGTGATIAREIPQCAVYFLTYD---RLKSVCMRKLCGDGVDARDA-----PPSTRAAA----IVLAGGSAGAVQWLLT-YPLDVTKSRIQAAAPGVYSGVLDCAMKSVSREGPMVLFRGLNMALLRAFPLHASIFASCE 296
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|923129577|ref|XP_013758254.1| (carnitine/acylcarnitine [Thecamonas trahens ATCC 50062] >gi|906555591|gb|KNC48834.1| carnitine/acylcarnitine [Thecamonas trahens ATCC 50062]) HSP 1 Score: 138.658 bits (348), Expect = 1.108e-35 Identity = 90/260 (34.62%), Postives = 136/260 (52.31%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKG-DNKRELTLGEMTA-SGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258 MV G +SLYRGL +P AG+GV A++F + + + D R ++ ++ + A+AGL+QS R E K+V Q G A PP++ + + +VR +G + LFRGL AT REVPQ+A+YYP Y + AL + + A + + + QW+P +DV+K+RMQ A G Y +V CA+ + ++G+ FF+G ALIRA PL+A +FLGY+TT+ L Sbjct: 62 MVASEGPASLYRGLTAPVAGYGVINAVAFGSFEWAKSWLDEVVDETRAGSMAQVVIPAAAFAGLVQSFVRGPVELAKTVQQAWHNPGNARAPPFKSAFHGIAHVVRNDGP-SALFRGLGATIAREVPQYAIYYPTYALLKPALTDALPSKYAPVAVAAAGALAGSA----------------------QWVPTI-PVDVIKTRMQGAPAGTYTSVVHCARTLWAEQGLATFFKGTAPALIRAAPLHAGVFLGYDTTMKLL 297
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1069961346|ref|XP_018287450.1| (hypothetical protein PHYBLDRAFT_188476 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026584762|gb|OAD69410.1| hypothetical protein PHYBLDRAFT_188476 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 137.117 bits (344), Expect = 4.049e-35 Identity = 97/267 (36.33%), Postives = 142/267 (53.18%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTR--FFRKGDNK-RELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTP--LPPHLLLLAGGVAGTVQW---LPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 259 ++ + GI LYRG+ +P A FA+SF Y G + F K D + +ELTL E+TA+GA++ + + ER+K ++Q++ GG K Y+ + + QL KEG +FRG AT LR+ P A Y+ YE+ +AL P+ + P L P +L AGG+AG W +PP DVLKSR+QSA G Y V DC +K+ + +G F+GL A++RAFP NA FLG E ++ A++ Sbjct: 68 IIAKDGILGLYRGMATPLASVTPIFAVSFFSYDLGKKIMFSLKSDKESKELTLAEITAAGAFSAVPTTLFMAPSERVKVLLQIQ-GQGGEQK--YKGPLDVVRQLY-KEGGVRSIFRGTGATLLRDSPGSAAYFVAYELVKKALT----------------------PAGTRPEDLNPGAVLFAGGMAGVAMWTIAIPP----DVLKSRLQSAPAGTYSGVVDCLQKTLKADGPRALFKGLGPAMLRAFPANAATFLGVEYSMKAMN 304
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1199287167|gb|OUS42316.1| (mitochondrial carrier domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 137.117 bits (344), Expect = 5.535e-35 Identity = 97/272 (35.66%), Postives = 133/272 (48.90%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTA--------SGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEI 264 ++R+ G LYRG+ +P +G A++F+ F R TLG A +GA+AGL+ S R ER+K+V QV D YR + + LV++ G+ GLF G AT RE+PQ AVY+ Y+ A + + + + + ++LAGG AG QWL Y LDV KSR+Q+A P Y V DCA KS +EG V FRGL +AL+RAFPL+A IF E A L + I Sbjct: 69 LLRKDGAKGLYRGITAPMMAYGAINAVAFSANAGAKDFLRT-------TLGAEAAASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDC----DSGRYRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAG-------------AIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCEAVHAMLARARGI 315
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1000780035|gb|KXN71245.1| (mitochondrial carrier [Conidiobolus coronatus NRRL 28638]) HSP 1 Score: 135.961 bits (341), Expect = 1.174e-34 Identity = 94/273 (34.43%), Postives = 142/273 (52.01%), Query Frame = 0 Query: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKG---DNKRELTLGEMTASGAW----AGLLQSPARQIFERIKSVMQVRKAAGGADKPP-YRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTP--LPPHLLLLAGGVAGTVQW---LPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQ 260 ++ + G LYRG+L+P G FA+ F GY G + R D+K+EL+LGE+ +G + A LL +P ER+K ++Q++ G +++PP Y+ + + ++++ G+ GL++G AT LR+VP Y+ YE+ +A P P L + +AGG+AG W +PP DVLKSR+Q+A G Y V D K + EG G F+GL A++RAFP NA FLG E +L AL+Q Sbjct: 58 IIAKDGARGLYRGMLTPLLGVTPIFAVCFWGYDLGKQIVRNTRGYDDKKELSLGEILFAGGFSAIPATLLMTPT----ERVKCILQIQ---GNSNEPPKYKGPSDAIRGIIKETGV-RGLYKGTVATLLRDVPGSVAYFGAYELFKKAFT----------------------PKDQGPEGLSAGAIFVAGGLAGMANWAVAIPP----DVLKSRLQTAPEGTYKGVGDVFVKLMKTEGPGALFKGLGPAMLRAFPANAACFLGVELSLKALNQ 296 The following BLAST results are available for this feature:
BLAST of EWM25325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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