EWM25325.1, cds5352 (CDS) Nannochloropsis gaditana

Overview
NameEWM25325.1
Unique Namecds5352
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:812374..812772 +
Alignment locationCM002465.1:812953..813369 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25325.1
Productmitochondrial carrier family
Orig transcript idgnl|cribi|Naga_100281g6.5091.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:812374..812772 +
CM002465.1supercontigCM002465.1:812953..813369 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Homology
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|585107081|gb|EWM25325.1| (mitochondrial carrier family [Nannochloropsis gaditana])

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271
            MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE
Sbjct:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|553186445|ref|XP_005854420.1| (mitochondrial carrier family [Nannochloropsis gaditana CCMP526] >gi|422294646|gb|EKU21946.1| mitochondrial carrier family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 474.167 bits (1219), Expect = 1.324e-167
Identity = 237/271 (87.45%), Postives = 237/271 (87.45%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271
            MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECL                                  YEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE
Sbjct:   51 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECL----------------------------------YEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 287          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|298707006|emb|CBJ29814.1| (carnitine/acylcarnitine carrier protein [Ectocarpus siliculosus])

HSP 1 Score: 239.58 bits (610), Expect = 1.441e-75
Identity = 125/272 (45.96%), Postives = 169/272 (62.13%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFF---RKGDNKR----ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIP 265
            M    G+ S YRGLLSP AG+G  FA+SF+ YG  +RF    RK D       E+ L E +A+G +AG + SP R +F+R+K+VMQVR   G     PY WSG C   LVR+EG+ +GLFRG+++T LRE+ Q A+YYP YE+     + ++A  + SG SS                 P L +LAGG+AG   WLPP YCLDV+K+R+QSA PGVY   WDC +K+ + EG  V FRGL ++++RAFP++  +F+GYETT+  L   E  P
Sbjct:    1 MAAHEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRRRKEDGGGGGSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVR--VGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVT----KDLLARRSTSGKSSVPE--------------PALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTRENCP 252          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|298707024|emb|CBJ29832.1| (carnitine/acylcarnitine carrier protein [Ectocarpus siliculosus])

HSP 1 Score: 182.57 bits (462), Expect = 1.910e-53
Identity = 105/219 (47.95%), Postives = 140/219 (63.93%), Query Frame = 0
Query:   40 RKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258
            R+     +LTL E   +GAWAG++ +P RQ+FER+K VMQVR+  G   + PY WSG C+V LVR+EG+  GL RG+ AT LRE  QF +YYP YE+                  + +  +   + S++ P  P LL LAGG+AG V WLPP YCLDV+K+RMQ+A PGVY  V DC  K+ + EG+ V FRGL  A++RAFP++  +FLGYETT+  L
Sbjct:   17 REAKATDKLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQ--GKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEI------------------AKDYFLPPDRTSTAVP-EPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLL 214          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|255085706|ref|XP_002505284.1| (mitochondrial carrier family, partial [Micromonas commoda] >gi|226520553|gb|ACO66542.1| mitochondrial carrier family, partial [Micromonas commoda])

HSP 1 Score: 140.198 bits (352), Expect = 1.469e-36
Identity = 102/272 (37.50%), Postives = 137/272 (50.37%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSP-----------------ARQIFERIKSVMQVRKAAGGADKPP--YRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYET 253
            M REG ++ LYRG+ +P   +G+  A++F  + +  R  R          GE+  SG  + LL+ P                  R   ER+K+V QV +++ G  K P  YR +      L ++ GL  G F G  AT  RE+PQ AVY+  Y+    A +K      A+G     + IV                LAGG AG VQW+   Y LDV+KSRMQ+  PG Y+   DCA KS + EG GVF RGL +AL+RAFPL+A IFL  ET
Sbjct:   43 MQREGPMA-LYRGIGAPMVAYGLINAVAFTTHTEVVRLLR----------GELGGSGG-SPLLKDPYLIGLAGGAAAGFTSSFVRGPAERVKTVQQVAESSCGTGKVPEKYRGTIRTAATLAKEHGLLKGWFTGTGATVAREIPQCAVYFLTYDSIRHACEK------AAGPGYETAGIV----------------LAGGSAGVVQWVAT-YPLDVIKSRMQAFPPGTYNGFLDCAMKSLRAEGPGVFVRGLEMALLRAFPLHASIFLTCET 279          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|145343070|ref|XP_001416289.1| (MC family transporter: carnitine/acylcarnitine [Ostreococcus lucimarinus CCE9901] >gi|144576514|gb|ABO94582.1| MC family transporter: carnitine/acylcarnitine [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 140.969 bits (354), Expect = 1.986e-36
Identity = 99/254 (38.98%), Postives = 132/254 (51.97%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFA--GYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYE 252
            +V + G   LYRGL +P   +G   A++F+   Y + +     G      TL  +  SGA AGL+ S  R   ER+K++ QV       D   YR +      L R+ G+  G+F G  AT  RE+PQ AVY+  Y+   R     M      G  + ++      PS+        ++LAGG AG VQWL   Y LDV KSR+Q+A PGVY  V DCA KS  +EG  V FRGL +AL+RAFPL+A IF   E
Sbjct:   61 LVAQDGARGLYRGLTAPMLAYGAINAVAFSTNAYVRDSIEEAFGAEAASTTLAGVV-SGASAGLVSSFVRGPAERLKTIQQVVDC----DSGRYRSATSTAFTLAREHGVMKGIFAGTGATIAREIPQCAVYFLTYD---RLKSVCMRKLCGDGVDARDA-----PPSTRAAA----IVLAGGSAGAVQWLLT-YPLDVTKSRIQAAAPGVYSGVLDCAMKSVSREGPMVLFRGLNMALLRAFPLHASIFASCE 296          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|923129577|ref|XP_013758254.1| (carnitine/acylcarnitine [Thecamonas trahens ATCC 50062] >gi|906555591|gb|KNC48834.1| carnitine/acylcarnitine [Thecamonas trahens ATCC 50062])

HSP 1 Score: 138.658 bits (348), Expect = 1.108e-35
Identity = 90/260 (34.62%), Postives = 136/260 (52.31%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKG-DNKRELTLGEMTA-SGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL 258
            MV   G +SLYRGL +P AG+GV  A++F  +     +  +  D  R  ++ ++   + A+AGL+QS  R   E  K+V Q     G A  PP++ +   +  +VR +G  + LFRGL AT  REVPQ+A+YYP Y +   AL   + +  A  + +    +                          QW+P    +DV+K+RMQ A  G Y +V  CA+  + ++G+  FF+G   ALIRA PL+A +FLGY+TT+  L
Sbjct:   62 MVASEGPASLYRGLTAPVAGYGVINAVAFGSFEWAKSWLDEVVDETRAGSMAQVVIPAAAFAGLVQSFVRGPVELAKTVQQAWHNPGNARAPPFKSAFHGIAHVVRNDGP-SALFRGLGATIAREVPQYAIYYPTYALLKPALTDALPSKYAPVAVAAAGALAGSA----------------------QWVPTI-PVDVIKTRMQGAPAGTYTSVVHCARTLWAEQGLATFFKGTAPALIRAAPLHAGVFLGYDTTMKLL 297          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1069961346|ref|XP_018287450.1| (hypothetical protein PHYBLDRAFT_188476 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026584762|gb|OAD69410.1| hypothetical protein PHYBLDRAFT_188476 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 137.117 bits (344), Expect = 4.049e-35
Identity = 97/267 (36.33%), Postives = 142/267 (53.18%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTR--FFRKGDNK-RELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTP--LPPHLLLLAGGVAGTVQW---LPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 259
            ++ + GI  LYRG+ +P A     FA+SF  Y  G +  F  K D + +ELTL E+TA+GA++ +  +      ER+K ++Q++   GG  K  Y+   + + QL  KEG    +FRG  AT LR+ P  A Y+  YE+  +AL                       P+ + P  L P  +L AGG+AG   W   +PP    DVLKSR+QSA  G Y  V DC +K+ + +G    F+GL  A++RAFP NA  FLG E ++ A++
Sbjct:   68 IIAKDGILGLYRGMATPLASVTPIFAVSFFSYDLGKKIMFSLKSDKESKELTLAEITAAGAFSAVPTTLFMAPSERVKVLLQIQ-GQGGEQK--YKGPLDVVRQLY-KEGGVRSIFRGTGATLLRDSPGSAAYFVAYELVKKALT----------------------PAGTRPEDLNPGAVLFAGGMAGVAMWTIAIPP----DVLKSRLQSAPAGTYSGVVDCLQKTLKADGPRALFKGLGPAMLRAFPANAATFLGVEYSMKAMN 304          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1199287167|gb|OUS42316.1| (mitochondrial carrier domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 137.117 bits (344), Expect = 5.535e-35
Identity = 97/272 (35.66%), Postives = 133/272 (48.90%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTA--------SGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEI 264
            ++R+ G   LYRG+ +P   +G   A++F+       F R        TLG   A        +GA+AGL+ S  R   ER+K+V QV       D   YR +    + LV++ G+  GLF G  AT  RE+PQ AVY+  Y+    A  + +     +  +   +                 ++LAGG AG  QWL   Y LDV KSR+Q+A P  Y  V DCA KS  +EG  V FRGL +AL+RAFPL+A IF   E   A L +   I
Sbjct:   69 LLRKDGAKGLYRGITAPMMAYGAINAVAFSANAGAKDFLRT-------TLGAEAAASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDC----DSGRYRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAG-------------AIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCEAVHAMLARARGI 315          
BLAST of EWM25325.1 vs. NCBI_GenBank
Match: gi|1000780035|gb|KXN71245.1| (mitochondrial carrier [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 135.961 bits (341), Expect = 1.174e-34
Identity = 94/273 (34.43%), Postives = 142/273 (52.01%), Query Frame = 0
Query:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKG---DNKRELTLGEMTASGAW----AGLLQSPARQIFERIKSVMQVRKAAGGADKPP-YRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTP--LPPHLLLLAGGVAGTVQW---LPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQ 260
            ++ + G   LYRG+L+P  G    FA+ F GY  G +  R     D+K+EL+LGE+  +G +    A LL +P     ER+K ++Q++   G +++PP Y+   + +  ++++ G+  GL++G  AT LR+VP    Y+  YE+  +A                        P    P  L    + +AGG+AG   W   +PP    DVLKSR+Q+A  G Y  V D   K  + EG G  F+GL  A++RAFP NA  FLG E +L AL+Q
Sbjct:   58 IIAKDGARGLYRGMLTPLLGVTPIFAVCFWGYDLGKQIVRNTRGYDDKKELSLGEILFAGGFSAIPATLLMTPT----ERVKCILQIQ---GNSNEPPKYKGPSDAIRGIIKETGV-RGLYKGTVATLLRDVPGSVAYFGAYELFKKAFT----------------------PKDQGPEGLSAGAIFVAGGLAGMANWAVAIPP----DVLKSRLQTAPEGTYKGVGDVFVKLMKTEGPGALFKGLGPAMLRAFPANAACFLGVELSLKALNQ 296          
The following BLAST results are available for this feature:
BLAST of EWM25325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107081|gb|EWM25325.1|0.000e+0100.00mitochondrial carrier family [Nannochloropsis gadi... [more]
gi|553186445|ref|XP_005854420.1|1.324e-16787.45mitochondrial carrier family [Nannochloropsis gadi... [more]
gi|298707006|emb|CBJ29814.1|1.441e-7545.96carnitine/acylcarnitine carrier protein [Ectocarpu... [more]
gi|298707024|emb|CBJ29832.1|1.910e-5347.95carnitine/acylcarnitine carrier protein [Ectocarpu... [more]
gi|255085706|ref|XP_002505284.1|1.469e-3637.50mitochondrial carrier family, partial [Micromonas ... [more]
gi|145343070|ref|XP_001416289.1|1.986e-3638.98MC family transporter: carnitine/acylcarnitine [Os... [more]
gi|923129577|ref|XP_013758254.1|1.108e-3534.62carnitine/acylcarnitine [Thecamonas trahens ATCC 5... [more]
gi|1069961346|ref|XP_018287450.1|4.049e-3536.33hypothetical protein PHYBLDRAFT_188476 [Phycomyces... [more]
gi|1199287167|gb|OUS42316.1|5.535e-3535.66mitochondrial carrier domain-containing protein [O... [more]
gi|1000780035|gb|KXN71245.1|1.174e-3434.43mitochondrial carrier [Conidiobolus coronatus NRRL... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5365rna5365Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications