EWM25357.1, cds5299 (CDS) Nannochloropsis gaditana

Overview
NameEWM25357.1
Unique Namecds5299
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:689675..689788 -
Alignment locationCM002465.1:687529..689562 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25357.1
Productpoly (adp-ribose) polymerase member 8
Orig transcript idgnl|cribi|Naga_100005g108.6651.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:689675..689788 -
CM002465.1supercontigCM002465.1:687529..689562 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003950NAD+ ADP-ribosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR012317Poly(ADP-ribose)pol_cat_dom
Homology
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|585107118|gb|EWM25357.1| (poly (adp-ribose) polymerase member 8 [Nannochloropsis gaditana])

HSP 1 Score: 1431.39 bits (3704), Expect = 0.000e+0
Identity = 715/715 (100.00%), Postives = 715/715 (100.00%), Query Frame = 0
Query:    1 METAKHAKEEMCIISKEVANVMAVLSLRADPMIEGPMKRQHLGSSPFSTSSPSTSSLSSSSPSSSSSSSSSSSSSSSSPFSLSSSSPFSLSSSSPSCSSSIHLYRLSIEIQSLEWDAEARTLHLSLNPDVALNAASASSFPTEVLIRAQQLLLAPPLELQLFFPESTAKAPFCFSSTDAGAIVARRANEALQPLKEASLLQALCLLTALVKDEAGAVWPENDPCWRRAWAERVVARVREQGLAVDLRLSLLSMSKAQSATLRPPVPRFFFESEGGYAVDRTVLVSAVNAVPPLHVICGGGGGRGGGRGDGARGEGDRLEGVEAVESLPFPSCLVLQYLLFRERVTLMNSSDAVAPGPRGRRGHEHDQGAAGGVEGGKEDEEWEGEKRQAHALDALAGLPSPGGPTPSQGGRETGLGPSGGPLRRFLASAFFGPRGDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRTVRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRRAA 715
            METAKHAKEEMCIISKEVANVMAVLSLRADPMIEGPMKRQHLGSSPFSTSSPSTSSLSSSSPSSSSSSSSSSSSSSSSPFSLSSSSPFSLSSSSPSCSSSIHLYRLSIEIQSLEWDAEARTLHLSLNPDVALNAASASSFPTEVLIRAQQLLLAPPLELQLFFPESTAKAPFCFSSTDAGAIVARRANEALQPLKEASLLQALCLLTALVKDEAGAVWPENDPCWRRAWAERVVARVREQGLAVDLRLSLLSMSKAQSATLRPPVPRFFFESEGGYAVDRTVLVSAVNAVPPLHVICGGGGGRGGGRGDGARGEGDRLEGVEAVESLPFPSCLVLQYLLFRERVTLMNSSDAVAPGPRGRRGHEHDQGAAGGVEGGKEDEEWEGEKRQAHALDALAGLPSPGGPTPSQGGRETGLGPSGGPLRRFLASAFFGPRGDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRTVRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRRAA
Sbjct:    1 METAKHAKEEMCIISKEVANVMAVLSLRADPMIEGPMKRQHLGSSPFSTSSPSTSSLSSSSPSSSSSSSSSSSSSSSSPFSLSSSSPFSLSSSSPSCSSSIHLYRLSIEIQSLEWDAEARTLHLSLNPDVALNAASASSFPTEVLIRAQQLLLAPPLELQLFFPESTAKAPFCFSSTDAGAIVARRANEALQPLKEASLLQALCLLTALVKDEAGAVWPENDPCWRRAWAERVVARVREQGLAVDLRLSLLSMSKAQSATLRPPVPRFFFESEGGYAVDRTVLVSAVNAVPPLHVICGGGGGRGGGRGDGARGEGDRLEGVEAVESLPFPSCLVLQYLLFRERVTLMNSSDAVAPGPRGRRGHEHDQGAAGGVEGGKEDEEWEGEKRQAHALDALAGLPSPGGPTPSQGGRETGLGPSGGPLRRFLASAFFGPRGDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRTVRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRRAA 715          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|299116965|emb|CBN75069.1| (poly (ADP-ribose) polymerase family, member 8 [Ectocarpus siliculosus])

HSP 1 Score: 85.1149 bits (209), Expect = 1.938e-13
Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 0
Query:  435 GDRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNF-----GSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAA---------------RQRSEPSTSTPVSSPTREVNRDRSE--YWVVANDSHLVVRALLLFKD 622
            GD P + F +    +  FDA A   G++  +HGSSP +FHSI++ GLR +SG+R M+NGA FG+G+Y++  C+ A  F     GS G  VW  S F +  +AS         P  A+ V+    +   P+   G   +  +A A + +               R R             +E+     E  Y+VV++ S + V A+LLF +
Sbjct:  333 GDVPTYAFEVVLPSDPAFDAQAELGGSKVAYHGSSPENFHSILNTGLRVMSGSRLMKNGAVFGNGIYLSGSCKAAATFAYRGDGS-GTTVWPRSTFVDNHSASR--------PAVAHDVVTASGVAGTPDDTKGDSPAGAAATARSGSASVASSATNARCKRFRHRLVAKCRVLNGDGVKEIEGSGKEASYFVVSDASRVRVEAILLFHE 533          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|221131139|ref|XP_002164087.1| (PREDICTED: mono [ADP-ribose] polymerase PARP16-like [Hydra vulgaris] >gi|828189999|ref|XP_012560136.1| PREDICTED: mono [ADP-ribose] polymerase PARP16-like [Hydra vulgaris])

HSP 1 Score: 77.7962 bits (190), Expect = 7.232e-12
Identity = 53/190 (27.89%), Postives = 91/190 (47.89%), Query Frame = 0
Query:  437 RPCFIFPLRHAP--NARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAARQRSEPSTSTPVSSPTREVNRDRSEYWVVANDSHLVVRALLLFKDPA 624
            +P +IF +++    + +FD LA+ +G ++GFHGS   +FHSIV+ GL+       M   A FG+GVY++    V+  + S G   W+HS+ G + +                  +A+CE++D P  +C     +G      A R R+  S +  V  P +        Y+VV +   + V+ + +F D  
Sbjct:  121 QPDYIFEIKYNTFSSQKFDDLAKMYGVKYGFHGSRMDNFHSIVNNGLQV-----HMVKNAVFGEGVYLSEDLSVSMPYISSGFT-WQHSKLGQQISC-----------------VAVCEVLDHPGVKCTMKTVNG------ANRSRANNSEAGEV--PKK--------YFVVTSSDLVRVKYIFVFTDKT 271          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|1173928455|gb|OQR82040.1| (hypothetical protein THRCLA_23253 [Thraustotheca clavata])

HSP 1 Score: 76.2554 bits (186), Expect = 4.716e-11
Identity = 47/116 (40.52%), Postives = 61/116 (52.59%), Query Frame = 0
Query:  440 FIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEII 555
            FI  +  +PN  FDALA +H T   +HGS    FHSI+  GL+ +SGTR M +G  FGDG+Y A   +VA NF  +G      SQ    +T  S  A            +A+CEII
Sbjct:  202 FIGQVIISPNPWFDALAEKHKTTVCYHGSKISHFHSILQNGLQIMSGTRHMGSGNIFGDGIYFAQSAQVAMNFA-FGAA----SQHWQHSTVMSKDAIC----------VAVCEII 302          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|698797628|ref|XP_009831843.1| (hypothetical protein H257_07859 [Aphanomyces astaci] >gi|574113634|gb|ETV79124.1| hypothetical protein H257_07859 [Aphanomyces astaci])

HSP 1 Score: 74.7146 bits (182), Expect = 1.836e-10
Identity = 51/150 (34.00%), Postives = 66/150 (44.00%), Query Frame = 0
Query:  433 PRGDRP--CFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGSDGSAVAVTAARQR 580
            P  D P  CF   +    N  FD  A + G +  +HGS   SFHSI+  GL  +SGTR M +G  FGDG+Y A    VA NF S     W +S             A  AP   +   +A+CE+I  P      P S  +   V    +R
Sbjct:  249 PSCDLPHVCFAATVVQTANPWFDRQAAKFGVKMCYHGSRLASFHSILQNGLHVMSGTRHMSSGNLFGDGIYFAESVHVAANFASPTPTTWPNS-------------AVLAP---SATCVAVCEVICDPAASKLLPSSQANGAYVVVQDER 382          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|1173946011|gb|OQR94582.1| (hypothetical protein ACHHYP_01105 [Achlya hypogyna])

HSP 1 Score: 72.7886 bits (177), Expect = 6.718e-10
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 0
Query:  440 FIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGS--DGSAVAVTAARQ 579
            F+  +  +P+  FD  A +HG+   +HGS    FHSI+  GL+ +SGTR M +G  FGDG+Y A   +VA NF ++G P  + SQ  +R  + +A              +A+C+++  P      P S  DG+   ++  R 
Sbjct:  214 FVGEVIASPDPWFDRAAAEHGSTMCYHGSKMVHFHSILQNGLQVMSGTRHMSSGNVFGDGIYFAQSPQVAMNF-AFGTPCQQWSQ--SRVMSKNAIC------------VAVCQVLKDPAVLKTLPASQADGTYYVLSDHRH 340          
BLAST of EWM25357.1 vs. NCBI_GenBank
Match: gi|673035556|ref|XP_008871739.1| (hypothetical protein H310_07977 [Aphanomyces invadans] >gi|574472178|gb|ETV99183.1| hypothetical protein H310_07977 [Aphanomyces invadans])

HSP 1 Score: 71.633 bits (174), Expect = 3.663e-9
Identity = 49/150 (32.67%), Postives = 65/150 (43.33%), Query Frame = 0
Query:  433 PRGDRP--CFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPGS--DGSAVAVTAAR 578
            P  D P  CF   +  + +  FD  A + GT+  +HGS   SFHSI+  GL  +SGTR M +G  FGDG+Y A    VA NF S     W  S    +A                   + +CE+I  P      P +  DG+   V   R
Sbjct:   35 PTSDLPHVCFAARVVQSADPWFDCQAAKFGTKVCYHGSRMASFHSILQNGLHVMSGTRHMSSGNLFGDGIYFAESIHVAANFASPAASAWAKSAILTKAAT----------------CLVVCEVICDPSRMKLLPSAKEDGAYYVVQDER 168          
The following BLAST results are available for this feature:
BLAST of EWM25357.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585107118|gb|EWM25357.1|0.000e+0100.00poly (adp-ribose) polymerase member 8 [Nannochloro... [more]
gi|299116965|emb|CBN75069.1|1.938e-1330.48poly (ADP-ribose) polymerase family, member 8 [Ect... [more]
gi|221131139|ref|XP_002164087.1|7.232e-1227.89PREDICTED: mono [ADP-ribose] polymerase PARP16-lik... [more]
gi|1173928455|gb|OQR82040.1|4.716e-1140.52hypothetical protein THRCLA_23253 [Thraustotheca c... [more]
gi|698797628|ref|XP_009831843.1|1.836e-1034.00hypothetical protein H257_07859 [Aphanomyces astac... [more]
gi|1173946011|gb|OQR94582.1|6.718e-1032.39hypothetical protein ACHHYP_01105 [Achlya hypogyna... [more]
gi|673035556|ref|XP_008871739.1|3.663e-932.67hypothetical protein H310_07977 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5312rna5312Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications