EWM25448.1, cds5296 (CDS) Nannochloropsis gaditana

Overview
NameEWM25448.1
Unique Namecds5296
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:680053..680122 -
Alignment locationCM002465.1:679313..679585 -
Alignment locationCM002465.1:678962..679208 -
Alignment locationCM002465.1:678719..678794 -
Alignment locationCM002465.1:677804..678400 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25448.1
Productreceptor mediated endocytosis family member (rme-1)
Orig transcript idgnl|cribi|Naga_100005g103.6742.mrna
GeneRME1L1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:680053..680122 -
CM002465.1supercontigCM002465.1:679313..679585 -
CM002465.1supercontigCM002465.1:678962..679208 -
CM002465.1supercontigCM002465.1:678719..678794 -
CM002465.1supercontigCM002465.1:677804..678400 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030381G_DYNAMIN_dom
IPR027417P-loop_NTPase
Homology
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|585107209|gb|EWM25448.1| (receptor mediated endocytosis family member (rme-1) [Nannochloropsis gaditana])

HSP 1 Score: 860.907 bits (2223), Expect = 0.000e+0
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0
Query:    1 MFIQYFTSSDTALTRFFSAPAPCRSIVRERASAPEPEASLLASRPPPTAPPGPSEPPWQAADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR 420
            MFIQYFTSSDTALTRFFSAPAPCRSIVRERASAPEPEASLLASRPPPTAPPGPSEPPWQAADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR
Sbjct:    1 MFIQYFTSSDTALTRFFSAPAPCRSIVRERASAPEPEASLLASRPPPTAPPGPSEPPWQAADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR 420          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|298708121|emb|CBJ30463.1| (RME1L1, RME1-like GTPase/ATPase without a C-terminal EH domain [Ectocarpus siliculosus])

HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0
Identity = 268/357 (75.07%), Postives = 313/357 (87.68%), Query Frame = 0
Query:   63 LTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
            L+  DKE  F+ LK+LYRKK+LPLE +S+YA FHS P+NPADFEAKPMVL++GQYSVGKTSFIRSLL+ DFPGQRVGPEPTTDRF+AV HG + R++PGHALAMQADKPFR +  FGNNFLTKFE + V APILRNITL+D+PG+LSGEKQR+GRDYD+ +VI WFA+RADLI+IMFDAHKLDISDEL++V+D L+ H DK+R+LLNKAD ID+QQLMR+YGALMWSLGKV+ TPEVCRVYIGSFWE PL +  NRFLLEKEK DLL EL  LP+NAVVRRINELVKRARSVKVHAY+IHYLRKQ+P + GK EKQ KL++ L +EF+ACARRYGLPLGDFP + KFR  L E+KD+
Sbjct:   92 LSNTDKEVIFDGLKKLYRKKILPLEESSRYAHFHSPPMNPADFEAKPMVLIVGQYSVGKTSFIRSLLKRDFPGQRVGPEPTTDRFVAVTHGEDERVMPGHALAMQADKPFRSLQQFGNNFLTKFEGSVVDAPILRNITLVDTPGVLSGEKQRIGRDYDFASVISWFAERADLIVIMFDAHKLDISDELKMVIDTLKPHHDKMRVLLNKADTIDTQQLMRVYGALMWSLGKVMQTPEVCRVYIGSFWEAPLSNFDNRFLLEKEKNDLLEELMLLPENAVVRRINELVKRARSVKVHAYIIHYLRKQMPYMMGKQEKQEKLIRRLDQEFLACARRYGLPLGDFPKVEKFRRSLREIKDI 448          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|223999223|ref|XP_002289284.1| (probable eh domain-containing protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220974492|gb|EED92821.1| probable eh domain-containing protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 505.368 bits (1300), Expect = 5.459e-176
Identity = 238/350 (68.00%), Postives = 291/350 (83.14%), Query Frame = 0
Query:   71 FFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPE-PRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
             F  LKRLYRKK+ PLEL+SKY  FHS PL+P+DF+AKPMVLLLGQYSVGKTSFIR LL  DFPGQR+GPEPTTDRF+A++ G    +++PG AL  QAD+PFRG++ FGNNFL++FE  E+  PIL NITL+D+PGILSG+KQ +GR+YDY+ V++WFA+RADLII+MFDAHKLDISDEL+ V++ L+ HQDK+R+LLNKAD I +QQLMR+YGALMWSLGKV+ TPEVCRVY+GSFW  PLK+ +   LL +EK DL  ++  LPQNAV+RRINELVKRAR+VKVHAY+IHYLRKQ+P  +GK EKQ +L+  L REFV CARRY LP GDFP++  FR  L E+KDL
Sbjct:    1 IFSGLKRLYRKKIRPLELSSKYGHFHSPPLSPSDFDAKPMVLLLGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAIVKGESGDKIIPGAALCSQADRPFRGLSPFGNNFLSRFEGVEMDCPILNNITLVDTPGILSGQKQSIGRNYDYEQVMKWFAERADLIIVMFDAHKLDISDELKRVIELLKPHQDKMRVLLNKADSISTQQLMRVYGALMWSLGKVMMTPEVCRVYMGSFWGAPLKNKEQSALLTQEKLDLFNDIAQLPQNAVMRRINELVKRARAVKVHAYIIHYLRKQLPYTWGKREKQRRLIDRLDREFVMCARRYELPRGDFPELEPFRQALLEIKDL 350          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|397618039|gb|EJK64730.1| (hypothetical protein THAOC_14506 [Thalassiosira oceanica])

HSP 1 Score: 510.375 bits (1313), Expect = 9.064e-173
Identity = 242/361 (67.04%), Postives = 298/361 (82.55%), Query Frame = 0
Query:   60 AADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPE-PRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
             ADL+  DK+  F  LKRLYRKK+ PLEL+SKY  FHS PL+P+DF++KPMVLLLGQYSVGKTSFIR LL  DFPGQR+GPEPTTDRF+A++ G    ++VPG A+  QAD+PFRG++ FGNNFL++FE  E+ +PIL NITL+D+PGILSG+KQ +GR+YDY+ V++WFA+RADLIIIMFDAHKLDISDEL+ V++ L+ HQDK+R+LLNKAD I +QQLMR+YGALMWSLGKV+ TPEVCRVY+GSFW  PLK+ +   LL +EK DL  ++  LPQNAV+RRINELVKRARSVKVHAY+IHYLRKQ+P  +GK +KQ +L+  L +EFV CARRY LP GDFP++  FR  L E KDL
Sbjct:  342 TADLSHFDKDVIFSGLKRLYRKKIRPLELSSKYGHFHSPPLSPSDFDSKPMVLLLGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAILKGDGVDKIVPGAAMCSQADRPFRGLSPFGNNFLSRFEGVEMDSPILNNITLVDTPGILSGQKQNIGRNYDYEQVMKWFAERADLIIIMFDAHKLDISDELKRVIELLKPHQDKMRVLLNKADSISTQQLMRVYGALMWSLGKVMMTPEVCRVYMGSFWGAPLKNREQAALLTQEKQDLFNDIAQLPQNAVMRRINELVKRARSVKVHAYIIHYLRKQLPYTWGKRDKQLRLIGRLEQEFVMCARRYELPRGDFPELEPFRQALLEYKDL 702          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|219111549|ref|XP_002177526.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412061|gb|EEC51989.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 496.893 bits (1278), Expect = 1.447e-172
Identity = 235/358 (65.64%), Postives = 293/358 (81.84%), Query Frame = 0
Query:   62 DLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
            DL+  DK+     L RLYRKK+LPLEL+S+Y  FHS PL+P+DF A PM+LLLGQYSVGKTSF++ LL  DFPG RVGPEPTTDRF AV+ G + ++VPG AL  Q D+PF G++ FGNNFL++ E AE+ APILRNIT++D+PGILSG+KQR  R+YDY+AV++WFA+RADL+I+MFDAHKLDISDEL+ VM+ +  H DKIR++LNKAD I +QQLMR+YGALMWSLGKV+NTPEVCRVY+GSFW+ PL++++   LL++E+ DLL ++  LPQ AV+RRINELVKRARSVKVHAY+IHYLRKQ+P  FGK EKQ +L+  L  EF+A ARRYGLP GDFP +   R  L E+KDL
Sbjct:    2 DLSSFDKDYILRGLARLYRKKILPLELSSRYGHFHSPPLSPSDFAAPPMILLLGQYSVGKTSFVKYLLGRDFPGIRVGPEPTTDRFTAVLWGQQDKVVPGAALCSQQDRPFTGLSPFGNNFLSRMEGAELNAPILRNITIVDTPGILSGQKQR-SRNYDYEAVMKWFAERADLVIVMFDAHKLDISDELKAVMELMIPHLDKIRVVLNKADSISTQQLMRVYGALMWSLGKVMNTPEVCRVYMGSFWDAPLQNTEQAELLQREEMDLLHDIMALPQQAVMRRINELVKRARSVKVHAYIIHYLRKQLPYTFGKREKQRRLIGRLESEFLAAARRYGLPKGDFPALEPMRQALYEIKDL 358          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|1210512138|dbj|GAX28801.1| (EH domain-containing protein 1 [Fistulifera solaris])

HSP 1 Score: 494.197 bits (1271), Expect = 1.765e-169
Identity = 235/360 (65.28%), Postives = 295/360 (81.94%), Query Frame = 0
Query:   60 AADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
            A DL+  DKE     L RLYRKK+LPLELAS+Y  FHS PL+P+DF+A P++LLLGQYSVGKTSF++ LL  DFPG RVGPEPTTDRF A++ G + +++PG AL  QAD+PF G+  FGNNFL++ EAAE+ AP+LRN+T+ID+PGILSG+KQR  R+YDY+ V++WFA+RADLII+MFDAHKLDISDEL+ VM+ +  H DKIRI+LNKAD I +QQLMR+YGALMWSLGKV+NTPEVCRVY+GSFW+ PL+ ++   LL++E+ DLL ++  LPQ+AV+RRINE+VKRARSVKVHAY+IHYLRKQ+P  +GK EKQ +L+  L  EF+A ARRYGLP GDFP +   R  L E+KDL
Sbjct:  126 AMDLSNFDKEFILRGLARLYRKKILPLELASRYGHFHSPPLSPSDFDAPPLILLLGQYSVGKTSFVKYLLGRDFPGIRVGPEPTTDRFTAILWGGQDKIIPGAALCSQADRPFTGLNPFGNNFLSRMEAAELDAPLLRNVTIIDTPGILSGQKQR-SRNYDYEGVMKWFAERADLIIVMFDAHKLDISDELKSVMELMIPHLDKIRIVLNKADSISTQQLMRVYGALMWSLGKVMNTPEVCRVYMGSFWDAPLQCTEQAELLQREEMDLLRDIMMLPQHAVMRRINEMVKRARSVKVHAYIIHYLRKQLPLTWGKREKQKRLIGRLESEFLAAARRYGLPKGDFPALEPMRQALYEIKDL 484          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|1210527881|dbj|GAX13412.1| (EH domain-containing protein 1 [Fistulifera solaris])

HSP 1 Score: 493.041 bits (1268), Expect = 4.377e-169
Identity = 235/361 (65.10%), Postives = 295/361 (81.72%), Query Frame = 0
Query:   59 QAADLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
             A DL+  DKE     L RLYRKK+LPLELAS+Y  FHS PL+P+DF+A P++LLLGQYSVGKTSF++ LL  DFPG RVGPEPTTDRF A++ G + +++PG AL  QAD+PF G+  FGNNFL++ EAAE+ AP+LRN+T+ID+PGILSG+KQR  R+YDY+ V++WFA+RADLII+MFDAHKLDISDEL+ VM+ +  H DKIRI+LNKAD I +QQLMR+YGALMWSLGKV+NTPEVCRVY+GSFW+ PL+ ++   LL++E+ DLL ++  LPQ+AV+RRINE+VKRARSVKVHAY+IHYLRKQ+P  +GK EKQ +L+  L  EF+A ARRYGLP GDFP +   R  L E+KDL
Sbjct:  128 NAMDLSNFDKEFILRGLARLYRKKILPLELASRYGHFHSPPLSPSDFDAPPLILLLGQYSVGKTSFVKYLLGRDFPGIRVGPEPTTDRFTAILWGGQDKIIPGAALCSQADRPFTGLNPFGNNFLSRMEAAELDAPLLRNVTIIDTPGILSGQKQR-SRNYDYEGVMKWFAERADLIIVMFDAHKLDISDELKSVMELMIPHLDKIRIVLNKADSISTQQLMRVYGALMWSLGKVMNTPEVCRVYMGSFWDAPLQCTEQAELLQREEMDLLRDIMMLPQHAVMRRINEMVKRARSVKVHAYIIHYLRKQLPLTWGKREKQKRLIGRLESEFLAAARRYGLPKGDFPALEPMRQALYEIKDL 487          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|1072237880|gb|OEU22607.1| (Dynamin_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 486.108 bits (1250), Expect = 3.299e-168
Identity = 228/358 (63.69%), Postives = 287/358 (80.17%), Query Frame = 0
Query:   62 DLTVLDKEQFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDL 419
            DL+  DKE   + L RLYRKK+LPLE++S+Y  FHS PL+PADF A P VLLLGQYSVGKTSFI+ L+  DFPG RVGPEPTTDRF AV++G   +++PG AL  Q D+PF G++ +GNNF+++ E  E  +PIL+N+TLID+PGILSG+KQ+  R+YDY++V++WF +RADL+I+MFDAHKLDISDEL+ VM+    H DK+RI+LNKAD + +QQLMR+YGALMWSLGKV+NTPEVCRVY+GSFW+ PLK ++   LL+ E+ DLL ++  LPQ AV+RRINELVKRARSVKVHAY+IHYLRKQ+P  +GK EKQ +L+  L  EF A ARRYGLP GDFP +  FR  L E+KDL
Sbjct:    2 DLSSFDKEYILKGLARLYRKKILPLEISSRYGHFHSPPLSPADFVAPPQVLLLGQYSVGKTSFIKYLVGRDFPGIRVGPEPTTDRFTAVLYGNNDKIIPGAALCSQTDRPFTGLSPYGNNFMSRMEGVEANSPILQNVTLIDTPGILSGQKQK-NRNYDYESVMKWFGERADLVIVMFDAHKLDISDELKGVMELFIPHLDKVRIVLNKADSVSTQQLMRVYGALMWSLGKVMNTPEVCRVYMGSFWDAPLKCTEQMDLLQNEETDLLNDIMNLPQQAVMRRINELVKRARSVKVHAYIIHYLRKQLPYTWGKREKQRRLIGRLESEFSAAARRYGLPKGDFPQLEPFRKALLEIKDL 358          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|551664947|ref|XP_005835236.1| (hypothetical protein GUITHDRAFT_157516 [Guillardia theta CCMP2712] >gi|428179385|gb|EKX48256.1| hypothetical protein GUITHDRAFT_157516 [Guillardia theta CCMP2712])

HSP 1 Score: 461.84 bits (1187), Expect = 3.002e-158
Identity = 221/371 (59.57%), Postives = 287/371 (77.36%), Query Frame = 0
Query:   64 TVLDKEQFFEELKRLYRKKVLPLELASKYAQF-HSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHP--------LKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVP-----TVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGEVKDLR 420
            T LDK++ FE L+ LY K+V PLE AS Y+ F   + L  +DF+AKP+VLLLGQYSVGKTSFIR+LL  DFPG R+GPEPTTD+F+AVM G + R++PGHAL+MQ D PF G+A FGN FL++F  A   AP+LRNITLID+PG+LS +K R GR+Y++ ++I+WFA RADLII+MFDAHKLDISDEL+ ++D LR HQDKIRILLNK  QID+QQL+R+YGALMWSLG+V+ TPEV RV++GSFW+          +  + +  LL++EKADL+ EL  LPQN ++RR++ LV+RARSVKVHA+++HYLRKQ+      TV+ K+EKQ  L+  L R FV  A+RY LPLGDFP+  + + +L E+KDLR
Sbjct:    4 TSLDKDKVFEGLRNLYIKRVKPLEEASWYSFFSKGSTLEASDFDAKPIVLLLGQYSVGKTSFIRALLGKDFPGMRIGPEPTTDQFVAVMAGNDERVIPGHALSMQKDSPFHGLAEFGNAFLSRFCGATSTAPLLRNITLIDTPGVLSNKKHREGREYEFSSIIEWFASRADLIIVMFDAHKLDISDELQSILDKLRGHQDKIRILLNKVQQIDTQQLLRVYGALMWSLGEVLRTPEVPRVFMGSFWDEEESTATAEWVNSNAHALLLQREKADLVQELVALPQNTILRRVSSLVRRARSVKVHAFIVHYLRKQIAGWATVTVWNKAEKQKDLIDALDRNFVLAAQRYNLPLGDFPNCERMKTKLREIKDLR 374          
BLAST of EWM25448.1 vs. NCBI_GenBank
Match: gi|923129225|ref|XP_013758078.1| (EH domain-containing protein 3 [Thecamonas trahens ATCC 50062] >gi|906555799|gb|KNC49042.1| EH domain-containing protein 3 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 448.743 bits (1153), Expect = 1.393e-151
Identity = 210/346 (60.69%), Postives = 272/346 (78.61%), Query Frame = 0
Query:   70 QFFEELKRLYRKKVLPLELASKYAQFHSAPLNPADFEAKPMVLLLGQYSVGKTSFIRSLLQGDFPGQRVGPEPTTDRFMAVMHGPEPRLVPGHALAMQADKPFRGVASFGNNFLTKFEAAEVPAPILRNITLIDSPGILSGEKQRLGRDYDYQAVIQWFADRADLIIIMFDAHKLDISDELRIVMDALRIHQDKIRILLNKADQIDSQQLMRIYGALMWSLGKVVNTPEVCRVYIGSFWEHPLKHSQNRFLLEKEKADLLAELDGLPQNAVVRRINELVKRARSVKVHAYLIHYLRKQVPTVFGKSEKQAKLLQTLPREFVACARRYGLPLGDFPDINKFRARLGE 415
            +  E+LKRLY+ ++ P+E    + QFHS  L  ADFEA PMV+LLGQYSVGKTSFIR +L+ DFP QR+GPEPTTDRF+AVM+G E R+VPG A +++ DKPF+G+  FG +FL+KFE AE P+PIL  +T ID+PG+LSGEKQRLGR YD+    +WFA+R+DLI+++FDAHKLDISDE +  ++ALR H DKIR++LNK+D ++SQQLMR+YGALMWSLGKV  TPEV RVYIGSFW+ PL +S+N+ L E E+ DL+A+L  LP+NA VR+INELVKRAR VKVHA LI +LR ++P++FGK +KQ  LL  +   F    R++ LP GDFPD+ +F+AR  E
Sbjct:   20 EVIEKLKRLYKTRIRPVEELYSFQQFHSPLLEDADFEAAPMVMLLGQYSVGKTSFIRYMLERDFPSQRIGPEPTTDRFVAVMYGEEDRVVPGAAASIRKDKPFQGLDKFGVSFLSKFEVAECPSPILEKVTFIDTPGVLSGEKQRLGRTYDFVETCEWFAERSDLILLLFDAHKLDISDEFKRSIEALRGHDDKIRVVLNKSDMVNSQQLMRVYGALMWSLGKVFATPEVVRVYIGSFWDQPLHNSENQALFEAEEQDLMADLRYLPRNAAVRKINELVKRARLVKVHALLISHLRGEMPSMFGKGKKQKALLDGMLEVFKTVMRQHQLPPGDFPDLERFKARAAE 365          
The following BLAST results are available for this feature:
BLAST of EWM25448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107209|gb|EWM25448.1|0.000e+0100.00receptor mediated endocytosis family member (rme-1... [more]
gi|298708121|emb|CBJ30463.1|0.000e+075.07RME1L1, RME1-like GTPase/ATPase without a C-termin... [more]
gi|223999223|ref|XP_002289284.1|5.459e-17668.00probable eh domain-containing protein, partial [Th... [more]
gi|397618039|gb|EJK64730.1|9.064e-17367.04hypothetical protein THAOC_14506 [Thalassiosira oc... [more]
gi|219111549|ref|XP_002177526.1|1.447e-17265.64predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210512138|dbj|GAX28801.1|1.765e-16965.28EH domain-containing protein 1 [Fistulifera solari... [more]
gi|1210527881|dbj|GAX13412.1|4.377e-16965.10EH domain-containing protein 1 [Fistulifera solari... [more]
gi|1072237880|gb|OEU22607.1|3.299e-16863.69Dynamin_N-domain-containing protein [Fragilariopsi... [more]
gi|551664947|ref|XP_005835236.1|3.002e-15859.57hypothetical protein GUITHDRAFT_157516 [Guillardia... [more]
gi|923129225|ref|XP_013758078.1|1.393e-15160.69EH domain-containing protein 3 [Thecamonas trahens... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5309rna5309Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications