EWM25398.1, cds5290 (CDS) Nannochloropsis gaditana

Overview
NameEWM25398.1
Unique Namecds5290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:667668..667681 -
Alignment locationCM002465.1:665818..667491 -
Alignment locationCM002465.1:665612..665765 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25398.1
Productccaat-binding factor complex subunit
Orig transcript idgnl|cribi|Naga_100005g97.6692.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:667668..667681 -
CM002465.1supercontigCM002465.1:665818..667491 -
CM002465.1supercontigCM002465.1:665612..665765 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016602CCAAT-binding factor complex
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR027170NFYC/HAP5_su
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Homology
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|585107159|gb|EWM25398.1| (ccaat-binding factor complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 1258.05 bits (3254), Expect = 0.000e+0
Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query:    1 MSFRLLLKRRLVGRFLLGLGSGDRQGGGERARSCWLVYCYCVSARSECPSYCMDAISSAQTKTTRNKNYALNLNGVTSTSDKDSVDGSGTSNAPSSRPALGTRDCAQTSGDFTLQASLHESDVFAWRRVMPQQPFSSPSQGGGPLPNSSPSSRCHELSGDHEQQDGRPEHPSSSQLHHYHHAMRTHLSQQDSQGHHLHQQRIQAPEQRPQHQHDHGNASGQHSIYHQQLPLQMQQDDLQSSQLQLQQQHHADQSKLQSHPHDQRHLQQLNHHHHGDPLRQFPLIYDSQQQRQRHQQQSQHQQPQQQQQQQQQQQQRPPPLPPPSPAQQLQERHSEDVEGANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQSGNGQREAVREVAKHSDAQTGDATALSDKSVRDPARVAVERDAAVAEEKREDPLVVALLHTAGRSEVASHSVPLVVWFRGRIRQNLTQEDSYQEQQQQLSPKEAQRVEPQRQHLEGNEYR 613
            MSFRLLLKRRLVGRFLLGLGSGDRQGGGERARSCWLVYCYCVSARSECPSYCMDAISSAQTKTTRNKNYALNLNGVTSTSDKDSVDGSGTSNAPSSRPALGTRDCAQTSGDFTLQASLHESDVFAWRRVMPQQPFSSPSQGGGPLPNSSPSSRCHELSGDHEQQDGRPEHPSSSQLHHYHHAMRTHLSQQDSQGHHLHQQRIQAPEQRPQHQHDHGNASGQHSIYHQQLPLQMQQDDLQSSQLQLQQQHHADQSKLQSHPHDQRHLQQLNHHHHGDPLRQFPLIYDSQQQRQRHQQQSQHQQPQQQQQQQQQQQQRPPPLPPPSPAQQLQERHSEDVEGANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQSGNGQREAVREVAKHSDAQTGDATALSDKSVRDPARVAVERDAAVAEEKREDPLVVALLHTAGRSEVASHSVPLVVWFRGRIRQNLTQEDSYQEQQQQLSPKEAQRVEPQRQHLEGNEYR
Sbjct:    1 MSFRLLLKRRLVGRFLLGLGSGDRQGGGERARSCWLVYCYCVSARSECPSYCMDAISSAQTKTTRNKNYALNLNGVTSTSDKDSVDGSGTSNAPSSRPALGTRDCAQTSGDFTLQASLHESDVFAWRRVMPQQPFSSPSQGGGPLPNSSPSSRCHELSGDHEQQDGRPEHPSSSQLHHYHHAMRTHLSQQDSQGHHLHQQRIQAPEQRPQHQHDHGNASGQHSIYHQQLPLQMQQDDLQSSQLQLQQQHHADQSKLQSHPHDQRHLQQLNHHHHGDPLRQFPLIYDSQQQRQRHQQQSQHQQPQQQQQQQQQQQQRPPPLPPPSPAQQLQERHSEDVEGANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQSGNGQREAVREVAKHSDAQTGDATALSDKSVRDPARVAVERDAAVAEEKREDPLVVALLHTAGRSEVASHSVPLVVWFRGRIRQNLTQEDSYQEQQQQLSPKEAQRVEPQRQHLEGNEYR 613          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|530480585|gb|EQB59542.1| (histone-like transcription factor and archaeal histone [Colletotrichum gloeosporioides Cg-14])

HSP 1 Score: 129.798 bits (325), Expect = 4.809e-30
Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 0
Query:  351 VVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRR--GKANWADAATEAEEAVSGPVGVVQSGNGQREAVREVAKHSDA 511
            ++   W+     IN +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A    +R  G+A  A     A+ A   P        GQ  A+ + A HS +
Sbjct:   63 ILTTYWQQ---TINHLESDNHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEASSHAKRTAGQAAPAGQGVPAQAASQIP--------GQHGAIPQAANHSSS 209          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|1066283671|ref|XP_018035915.1| (histone-fold-containing protein [Paraphaeosphaeria sporulosa] >gi|1027145100|gb|OAG05550.1| histone-fold-containing protein [Paraphaeosphaeria sporulosa])

HSP 1 Score: 129.798 bits (325), Expect = 5.170e-30
Identity = 72/202 (35.64%), Postives = 110/202 (54.46%), Query Frame = 0
Query:  345 NHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVV--------------QSGNG----QREAVREVAKHSDAQTGDATALSDKSVRDPA 528
            N     +++  W+ +   +  +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A+P  R G      ++T  + A + P G +                G G    Q+E  R+   ++    GD  A   + + DP+
Sbjct:   72 NGSYRDILNTYWQQQ---VTKLETDEHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEALPHKRSG----GQSSTAVQAAGAVPAGALAQQGVHPQHQMAPPDYGIGQHMPQQEDFRQPGMYAGPVQGDPNAYGQQQMFDPS 261          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|596726019|ref|XP_007287196.1| (ccaat-binding factor complex subunit [Colletotrichum gloeosporioides Nara gc5] >gi|429848229|gb|ELA23737.1| ccaat-binding factor complex subunit [Colletotrichum gloeosporioides Nara gc5])

HSP 1 Score: 129.798 bits (325), Expect = 5.253e-30
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 0
Query:  351 VVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQSGNGQREAVREVAKHSDA 511
            ++   W+     IN +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A    +R     A  A  A + V  P       +GQ  A+ + A HS +
Sbjct:   63 ILTTYWQQ---TINHLESDNHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEASSHAKRT----AGQAAPAGQGV--PAQAASQISGQHGAIPQAANHSSS 209          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|330912627|ref|XP_003296016.1| (hypothetical protein PTT_04394 [Pyrenophora teres f. teres 0-1] >gi|311332185|gb|EFQ95893.1| hypothetical protein PTT_04394 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 130.183 bits (326), Expect = 5.774e-30
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 0
Query:  340 ANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQ 493
             NYR       +++  W+ +   +  +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A P  R    N   AA ++  AV  P G+ Q
Sbjct:   72 GNYR------DILNTYWQQQ---VTKLETDEHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSAGQN---AAVQSSAAVVPPGGMAQ 208          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|189190550|ref|XP_001931614.1| (nuclear transcription factor Y subunit C-3 [Pyrenophora tritici-repentis Pt-1C-BFP] >gi|187973220|gb|EDU40719.1| nuclear transcription factor Y subunit C-3 [Pyrenophora tritici-repentis Pt-1C-BFP])

HSP 1 Score: 130.183 bits (326), Expect = 6.018e-30
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 0
Query:  340 ANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQ 493
             NYR       +++  W+ +   +  +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A P  R    N   AA ++  AV  P G+ Q
Sbjct:   72 GNYR------DILNTYWQQQ---VTKLETDEHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSAGQN---AAVQSSAAVVPPGGMAQ 208          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|550809565|gb|ERT01478.1| (transcriptional activator HAP5 [Sporothrix schenckii ATCC 58251])

HSP 1 Score: 129.798 bits (325), Expect = 7.178e-30
Identity = 59/123 (47.97%), Postives = 83/123 (67.48%), Query Frame = 0
Query:  351 VVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKAN 473
            ++   W+     IN +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A    +RG +N
Sbjct:   71 ILTTYWQQ---TINHLESDTHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEATSHPKRGSSN 185          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|748542636|gb|KIH92940.1| (hypothetical protein SPBR_02861 [Sporothrix brasiliensis 5110])

HSP 1 Score: 129.413 bits (324), Expect = 7.999e-30
Identity = 59/123 (47.97%), Postives = 83/123 (67.48%), Query Frame = 0
Query:  351 VVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKAN 473
            ++   W+     IN +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A    +RG +N
Sbjct:   62 ILTTYWQQ---TINHLESDTHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEATSHPKRGSSN 176          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|1029186717|gb|OAL51282.1| (histone-fold-containing protein [Pyrenochaeta sp. DS3sAY3a])

HSP 1 Score: 129.413 bits (324), Expect = 9.276e-30
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 0
Query:  340 ANYRPNHCIEHVVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQ 493
             NYR       +++  W+ +   +  +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A P  R    N   AA ++  AV  P G+ Q
Sbjct:   71 GNYR------DILNTYWQQQ---VTKLETDEHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALSKSDMFDFLIDIVPREEAHPHKRSAGQN---AAVQSSAAVVPPGGMPQ 207          
BLAST of EWM25398.1 vs. NCBI_GenBank
Match: gi|640921902|gb|KDN66225.1| (putative histone-like transcription factor and archaeal histone [Colletotrichum sublineola])

HSP 1 Score: 129.028 bits (323), Expect = 9.376e-30
Identity = 68/165 (41.21%), Postives = 97/165 (58.79%), Query Frame = 0
Query:  351 VVDKVWRSEGVKINDIEPSRTDFKLQELPLARVKKVMKQDDEIEGISRFLVSMEALIIMAKACELFVNELTLRGWHMTEENRRRTLQRMHLAQAMIKCEMFDFLIDIVPRDQAVPAVRRGKANWADAATEAEEAVSGPVGVVQSGN----GQREAVREVAKHSDA 511
            ++   W+     IN +E    D+KL +LPLAR+KKVMK D E++     ++S EA I+ AK C++F+ ELT+R W   EEN+RRTLQR  +A A+ K +MFDFLIDIVPR++A    +R           A +A   P GV    N    GQ  ++++ A HS +
Sbjct:   63 ILTTYWQQ---TINHLESDNHDYKLHQLPLARIKKVMKADPEVK-----MISAEAPILFAKGCDIFITELTMRAWIHAEENKRRTLQRSDIASALAKSDMFDFLIDIVPREEASSHAKR----------TAGQAAPAPQGVPAQTNSQIPGQHGSLQQSANHSSS 209          
The following BLAST results are available for this feature:
BLAST of EWM25398.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107159|gb|EWM25398.1|0.000e+0100.00ccaat-binding factor complex subunit [Nannochlorop... [more]
gi|530480585|gb|EQB59542.1|4.809e-3042.33histone-like transcription factor and archaeal his... [more]
gi|1066283671|ref|XP_018035915.1|5.170e-3035.64histone-fold-containing protein [Paraphaeosphaeria... [more]
gi|596726019|ref|XP_007287196.1|5.253e-3042.24ccaat-binding factor complex subunit [Colletotrich... [more]
gi|330912627|ref|XP_003296016.1|5.774e-3043.51hypothetical protein PTT_04394 [Pyrenophora teres ... [more]
gi|189190550|ref|XP_001931614.1|6.018e-3043.51nuclear transcription factor Y subunit C-3 [Pyreno... [more]
gi|550809565|gb|ERT01478.1|7.178e-3047.97transcriptional activator HAP5 [Sporothrix schenck... [more]
gi|748542636|gb|KIH92940.1|7.999e-3047.97hypothetical protein SPBR_02861 [Sporothrix brasil... [more]
gi|1029186717|gb|OAL51282.1|9.276e-3043.51histone-fold-containing protein [Pyrenochaeta sp. ... [more]
gi|640921902|gb|KDN66225.1|9.376e-3041.21putative histone-like transcription factor and arc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5303rna5303Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications