EWM30155.1, cds526 (CDS) Nannochloropsis gaditana

Overview
NameEWM30155.1
Unique Namecds526
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1321628..1321786 -
Alignment locationCM002455.1:1320469..1321476 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30155.1
Productcyclin-l1
Orig transcript idgnl|cribi|Naga_100115g14.6580.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1321628..1321786 -
CM002455.1supercontigCM002455.1:1320469..1321476 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006355regulation of transcription, DNA-templated
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR015429Cyclin_C/H/T/L
IPR006671Cyclin_N
IPR013763Cyclin-like
Homology
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|585112811|gb|EWM30155.1| (cyclin-l1 [Nannochloropsis gaditana])

HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query:    1 MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV 388
            MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV
Sbjct:    1 MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV 388          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|299469721|emb|CBN76575.1| (cyclin [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 9.362e-31
Identity = 87/235 (37.02%), Postives = 114/235 (48.51%), Query Frame = 0
Query:   34 IRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDR 268
            +R +  +VL  AG RLR PQ T  TA L+FHRF     + ++ R+R  DV+LTTCLFLA KV E PRR+RD IN ++++                   S G D   L                                  LD+ YW +KE +V+ EQ++LR + F ++    YRLLLNYARSLR        AW L ND LF P   L+ P  A A A + +A R+    GGDR
Sbjct:   33 LRLEWAKVLFRAGYRLRFPQGTTGTAVLLFHRFLIQERVGKHRRSR--DVILTTCLFLAGKVTEAPRRLRDVINVLHMLN------------------STGQDEPPL----------------------------------LDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLDRAATRTAWGLANDVLFCPR-ALSAPPPAVACAVIRMAARV---HGGDR 209          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|723754206|ref|XP_010314943.1| (PREDICTED: cyclin-L1-like [Solanum lycopersicum])

HSP 1 Score: 110.153 bits (274), Expect = 1.644e-23
Identity = 75/236 (31.78%), Postives = 124/236 (52.54%), Query Frame = 0
Query:   32 TDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVR---KQLLAQAQGTRFVDTCAPSEGGDAETLSE-RGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
            +D+R     ++ +AG  L LPQ T+ATA ++ HRFF V S+  +  N   D+ +++ L+L+SK+ E P R+RD IN    ++   K +L+        DT   +      TL E   W  G G  GA  + K   D+      ++ S  D  +WD K+ +V +E  +L+ LGF+++  + Y  ++NY +   L   P + +  W++LND+L +P   +  P H  AVA++ L  RL
Sbjct:   30 SDLRTAGCMLVQEAGVMLELPQSTMATAQVLIHRFFYVSSMHSFGVN---DIAISS-LYLSSKLNETPVRLRDLINTFIFLQARIKHILSLP-----ADTPLSTASSSKRTLDEPEPWRIGLGPSGANRKGK-EKDIWTGFTFSVPSFHDDVFWDWKDIIVSSEMQILKRLGFNMQVDLPYSHVINYCKILDLVFEPQVAQTCWSILNDALLTPLYAIH-PPHVLAVASILLTTRL 254          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1102541049|ref|XP_019044655.1| (cyclin-dependent protein kinase regulator [Kwoniella bestiolae CBS 10118] >gi|1045429235|gb|OCF23585.1| cyclin-dependent protein kinase regulator [Kwoniella bestiolae CBS 10118])

HSP 1 Score: 100.138 bits (248), Expect = 4.705e-20
Identity = 87/307 (28.34%), Postives = 142/307 (46.25%), Query Frame = 0
Query:   20 VRTPSPPGGRKL---TDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVV--RKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGD-----RDGENEDGPPGQRGGLKLAIDKDMAPIRETST---GVGGKGQLKKH 310
            + TPS   G       D+R     ++ +AG  L LPQ T+ATA +IFHRF+ V SL  +  N   D+ ++  LFL++K+ E P R+RD IN    +  R Q L        + + + S G          W  G+      G+ K    + +  K  + S  D  +W+ K+ +   E  +L+ LGF+++  + Y  ++NY +   L     + ++ W++LND L +P   L  P H  A A++ L  RLL     +      D   +D        +++  D  + P R   T   G+GG GQ ++H
Sbjct:   15 LNTPSSEDGVSAEVEADLRVAGCMLIQEAGIMLGLPQSTMATAQVIFHRFYYVSSLYSFGVN---DISISA-LFLSTKLCETPVRLRDLINTYLFLSARVQYLLNKPSDASLISSSTSGG---------SWRIGDSQ-SVKGKEKEQDPIWKEFKFEVPSFHDEVFWEWKDVITANEMQILKRLGFNMQVDLPYSHMINYLKILDLVFEDEVAQMCWSILNDMLLTPMYALH-PPHTLACASILLTTRLLRIPLPEGWYILFDATYDDIWLCCGHVMRVYNDWGIEPPRGALTSGLGIGGHGQNQEH 306          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1183411136|gb|ORY35616.1| (cyclin-dependent protein kinase regulator [Naematelia encephala])

HSP 1 Score: 99.3673 bits (246), Expect = 8.782e-20
Identity = 70/235 (29.79%), Postives = 113/235 (48.09%), Query Frame = 0
Query:   33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVR---KQLLAQAQGTRF--VDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
            D+R     ++ +AG  L+LPQ T+ATA +IFHRF+ V S+  +  N     +  + L+L+SK+ E P R+RD IN    +    + LL Q     F  ++   PS  G             NG G            +  V G     D  +WD K+ +V +E  +L+ LGF+++  + Y  ++NY +   L     + +  W++LND+L +P   +  P H  A A++ L  RL
Sbjct:   31 DLRVAGCMMIQEAGIMLKLPQSTMATAQVIFHRFYYVSSMASFGIND----ISVSALYLSSKLNETPIRLRDLINTYIFLTARIRHLLKQPADDLFQIMNVAGPSRFG------------SNGKGKEKERDPVWNGFSFEVPG---FHDEVFWDWKDVIVASEMQILKRLGFNMQVDLPYSHVINYLKILDLVFEEGIAQSCWSILNDALLTPLYAIH-PPHVLACASILLTTRL 245          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1102229929|ref|XP_019030396.1| (cyclin-dependent protein kinase regulator [Tsuchiyaea wingfieldii CBS 7118] >gi|1062146126|gb|ODN92769.1| cyclin-dependent protein kinase regulator [Tsuchiyaea wingfieldii CBS 7118])

HSP 1 Score: 97.4413 bits (241), Expect = 4.399e-19
Identity = 71/231 (30.74%), Postives = 119/231 (51.52%), Query Frame = 0
Query:   33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
            D+R     ++ +AG  ++LPQ+T+ATA ++ HRF+ V S+  ++ N   D+ + + LFLASK+ E P R+RD IN        L   A+    +D   PS+     TL          +G A     GN D+ R  K  I    D  +W+ K+ +  +E  +L+ LGF+++  + Y  ++NY +   L  +  + ++ W++LND L +P   +  P H  A  ++ LA RL
Sbjct:   31 DLRTAGCMLIQEAGVMMKLPQKTMATAQVLLHRFYYVSSMYSFSVN---DISI-SALFLASKLRETPVRLRDLINTY------LFLTARIRHLLDL--PSD--QHLTLDHL------SSGSASRASNGN-DIWRGFKFEIPGFHDEVFWEWKDVITASEMQILKRLGFNMQVDLPYNHMINYLKILDLVFKEEIAQMCWSILNDMLLTPLYAIH-PPHTLACISILLATRL 239          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1183308428|gb|ORX38608.1| (putative cyclin-dependent protein kinase regulator [Kockovaella imperatae])

HSP 1 Score: 94.7449 bits (234), Expect = 4.881e-18
Identity = 72/247 (29.15%), Postives = 123/247 (49.80%), Query Frame = 0
Query:   33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINC-VYVVRK----------QLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSV-KGNILSL----DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
            D+R     ++ +AG  L LPQ TIATA ++ +RF+ V S+  +  N     +  + L+L+SK+ E P R+RD IN  +++V +          Q LA         + +   G + E      W  G GNG +  + K   +    + KG    +    D  +WD K+ +V +E  +L+ LGF+++  + Y  ++NY +   L   P + +  W++LND+L +P   +  P H  A A++ L+ RLL
Sbjct:   31 DLRVVGCMMIQEAGIMLELPQSTIATAQVLLNRFYYVSSMLSFGVND----ISISALYLSSKLNETPVRLRDLINTYIFLVARINHLLSLHADQPLASPSTASSSKSASKPWGDEPEP-----WRIGLGNGQSTAKGKDKAEDQDGIWKGFRFEVPGFHDEVFWDWKDVIVGSEMQILKRLGFNMQVDLPYSHVINYCKILDLVFEPDVAQTCWSILNDALLTPLYAIHQP-HTLACASILLSTRLL 267          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1062152203|gb|ODN98820.1| (cyclin-dependent protein kinase regulator [Cryptococcus depauperatus CBS 7855])

HSP 1 Score: 93.5893 bits (231), Expect = 7.163e-18
Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 0
Query:   33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGG---DAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
            D+R     ++ +AG  L LPQ T+ATA ++ HRF+ V SL  +  N   D+ +++ LFLASK+ E   R+RD IN VY+V   LLA+ Q    + +  P + G     E   +  W   N N   P                    D  +WD K+ V  +E  +L+ LGF+++  + Y  ++NY R   L     + ++ W++LND L +P   +  P H  A  ++ L  RLL
Sbjct:   31 DLRVVGCMLIQEAGIMLDLPQNTMATAQVLLHRFYYVSSLASFGVN---DISISS-LFLASKLCETTVRLRDLIN-VYLV---LLARIQHILSLSSDYPLQSGILSHEEDAQDPIWRDFNFNIPRPH-------------------DEVFWDWKDVVTASEMQILKRLGFNMQVDLPYSHMINYLRILDLVFEDQVGQMCWSVLNDMLLTPLYAIH-PPHTLACISILLTTRLL 236          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|831274269|ref|XP_012684314.1| (PREDICTED: cyclin-K, partial [Clupea harengus])

HSP 1 Score: 94.7449 bits (234), Expect = 1.005e-17
Identity = 70/230 (30.43%), Postives = 104/230 (45.22%), Query Frame = 0
Query:   35 RQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARP----VLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
            R++  R + D G RL L  +T+AT  + FHRF+   S +++ R     V    CLFLA KVEE P++ +D I       + LL   Q  +F D     + G+ E            +   PG L G T                    +E V+  E+++L+ + FDL+    Y+ LL YA+ L+        LV++AW  +NDSL +    L       AVA + LA RL
Sbjct:   50 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY----VTGACCLFLAGKVEETPKKCKDIIKTA----RSLLNDVQFAQFGDDPKVFQPGNTEL-----------HSAYPGWLVGKT--------------------QEEVMVLERILLQTIKFDLQVEHPYQFLLRYAKQLKGDKNKVQKLVQMAWTFVNDSLCT-MLSLQWEPEIIAVAVMYLAGRL 239          
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1062139726|gb|ODN86417.1| (cyclin-dependent protein kinase regulator [Cryptococcus depauperatus CBS 7841])

HSP 1 Score: 92.8189 bits (229), Expect = 1.376e-17
Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 0
Query:   33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGG---DAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
            D+R     ++ +AG  L LPQ T+ATA ++ HRF+ V SL  +  N   D+ +++ LFLASK+ E   R+RD IN VY+V   LLA+ Q    + +  P + G     E   +  W   N N   P                    D  +WD K+ V  +E  +L+ LGF+++  + Y  ++NY R   L     + ++ W++LND L +P   +  P H  A  ++ L  RLL
Sbjct:   31 DLRVVGCMLIQEAGIMLDLPQNTMATAQVLLHRFYYVSSLASFGIN---DISISS-LFLASKLCETTVRLRDLIN-VYLV---LLARIQHILSLPSDYPLQSGILSHEEDAQDPIWRDFNFNIPRPH-------------------DEVFWDWKDVVTASEMQILKRLGFNMQVDLPYSHMINYLRILDLVFEDQVGQMCWSVLNDMLLTPLYAIH-PPHTLACISILLTTRLL 236          
The following BLAST results are available for this feature:
BLAST of EWM30155.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112811|gb|EWM30155.1|0.000e+0100.00cyclin-l1 [Nannochloropsis gaditana][more]
gi|299469721|emb|CBN76575.1|9.362e-3137.02cyclin [Ectocarpus siliculosus][more]
gi|723754206|ref|XP_010314943.1|1.644e-2331.78PREDICTED: cyclin-L1-like [Solanum lycopersicum][more]
gi|1102541049|ref|XP_019044655.1|4.705e-2028.34cyclin-dependent protein kinase regulator [Kwoniel... [more]
gi|1183411136|gb|ORY35616.1|8.782e-2029.79cyclin-dependent protein kinase regulator [Naemate... [more]
gi|1102229929|ref|XP_019030396.1|4.399e-1930.74cyclin-dependent protein kinase regulator [Tsuchiy... [more]
gi|1183308428|gb|ORX38608.1|4.881e-1829.15putative cyclin-dependent protein kinase regulator... [more]
gi|1062152203|gb|ODN98820.1|7.163e-1831.62cyclin-dependent protein kinase regulator [Cryptoc... [more]
gi|831274269|ref|XP_012684314.1|1.005e-1730.43PREDICTED: cyclin-K, partial [Clupea harengus][more]
gi|1062139726|gb|ODN86417.1|1.376e-1731.62cyclin-dependent protein kinase regulator [Cryptoc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna526rna526Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications