EWM30155.1, cds526 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|585112811|gb|EWM30155.1| (cyclin-l1 [Nannochloropsis gaditana]) HSP 1 Score: 793.497 bits (2048), Expect = 0.000e+0 Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query: 1 MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV 388
MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV
Sbjct: 1 MSVAARGGDHAAILPTRNKVRTPSPPGGRKLTDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDRDGENEDGPPGQRGGLKLAIDKDMAPIRETSTGVGGKGQLKKHTFANLSTSTARTVAYSRQGHKSEGRFSQDGKFEPLDFNCHDPGELRVNSRMWNVLGAQGKDVQAWCDSLLHLYEEGPV 388
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|299469721|emb|CBN76575.1| (cyclin [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 9.362e-31 Identity = 87/235 (37.02%), Postives = 114/235 (48.51%), Query Frame = 0
Query: 34 IRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGDR 268
+R + +VL AG RLR PQ T TA L+FHRF + ++ R+R DV+LTTCLFLA KV E PRR+RD IN ++++ S G D L LD+ YW +KE +V+ EQ++LR + F ++ YRLLLNYARSLR AW L ND LF P L+ P A A A + +A R+ GGDR
Sbjct: 33 LRLEWAKVLFRAGYRLRFPQGTTGTAVLLFHRFLIQERVGKHRRSR--DVILTTCLFLAGKVTEAPRRLRDVINVLHMLN------------------STGQDEPPL----------------------------------LDKAYWTMKERIVEFEQVLLRTINFQVDPPDPYRLLLNYARSLRLDRAATRTAWGLANDVLFCPR-ALSAPPPAVACAVIRMAARV---HGGDR 209
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|723754206|ref|XP_010314943.1| (PREDICTED: cyclin-L1-like [Solanum lycopersicum]) HSP 1 Score: 110.153 bits (274), Expect = 1.644e-23 Identity = 75/236 (31.78%), Postives = 124/236 (52.54%), Query Frame = 0
Query: 32 TDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVR---KQLLAQAQGTRFVDTCAPSEGGDAETLSE-RGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
+D+R ++ +AG L LPQ T+ATA ++ HRFF V S+ + N D+ +++ L+L+SK+ E P R+RD IN ++ K +L+ DT + TL E W G G GA + K D+ ++ S D +WD K+ +V +E +L+ LGF+++ + Y ++NY + L P + + W++LND+L +P + P H AVA++ L RL
Sbjct: 30 SDLRTAGCMLVQEAGVMLELPQSTMATAQVLIHRFFYVSSMHSFGVN---DIAISS-LYLSSKLNETPVRLRDLINTFIFLQARIKHILSLP-----ADTPLSTASSSKRTLDEPEPWRIGLGPSGANRKGK-EKDIWTGFTFSVPSFHDDVFWDWKDIIVSSEMQILKRLGFNMQVDLPYSHVINYCKILDLVFEPQVAQTCWSILNDALLTPLYAIH-PPHVLAVASILLTTRL 254
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1102541049|ref|XP_019044655.1| (cyclin-dependent protein kinase regulator [Kwoniella bestiolae CBS 10118] >gi|1045429235|gb|OCF23585.1| cyclin-dependent protein kinase regulator [Kwoniella bestiolae CBS 10118]) HSP 1 Score: 100.138 bits (248), Expect = 4.705e-20 Identity = 87/307 (28.34%), Postives = 142/307 (46.25%), Query Frame = 0
Query: 20 VRTPSPPGGRKL---TDIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVV--RKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLLTAAGGD-----RDGENEDGPPGQRGGLKLAIDKDMAPIRETST---GVGGKGQLKKH 310
+ TPS G D+R ++ +AG L LPQ T+ATA +IFHRF+ V SL + N D+ ++ LFL++K+ E P R+RD IN + R Q L + + + S G W G+ G+ K + + K + S D +W+ K+ + E +L+ LGF+++ + Y ++NY + L + ++ W++LND L +P L P H A A++ L RLL + D +D +++ D + P R T G+GG GQ ++H
Sbjct: 15 LNTPSSEDGVSAEVEADLRVAGCMLIQEAGIMLGLPQSTMATAQVIFHRFYYVSSLYSFGVN---DISISA-LFLSTKLCETPVRLRDLINTYLFLSARVQYLLNKPSDASLISSSTSGG---------SWRIGDSQ-SVKGKEKEQDPIWKEFKFEVPSFHDEVFWEWKDVITANEMQILKRLGFNMQVDLPYSHMINYLKILDLVFEDEVAQMCWSILNDMLLTPMYALH-PPHTLACASILLTTRLLRIPLPEGWYILFDATYDDIWLCCGHVMRVYNDWGIEPPRGALTSGLGIGGHGQNQEH 306
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1183411136|gb|ORY35616.1| (cyclin-dependent protein kinase regulator [Naematelia encephala]) HSP 1 Score: 99.3673 bits (246), Expect = 8.782e-20 Identity = 70/235 (29.79%), Postives = 113/235 (48.09%), Query Frame = 0
Query: 33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVR---KQLLAQAQGTRF--VDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
D+R ++ +AG L+LPQ T+ATA +IFHRF+ V S+ + N + + L+L+SK+ E P R+RD IN + + LL Q F ++ PS G NG G + V G D +WD K+ +V +E +L+ LGF+++ + Y ++NY + L + + W++LND+L +P + P H A A++ L RL
Sbjct: 31 DLRVAGCMMIQEAGIMLKLPQSTMATAQVIFHRFYYVSSMASFGIND----ISVSALYLSSKLNETPIRLRDLINTYIFLTARIRHLLKQPADDLFQIMNVAGPSRFG------------SNGKGKEKERDPVWNGFSFEVPG---FHDEVFWDWKDVIVASEMQILKRLGFNMQVDLPYSHVINYLKILDLVFEEGIAQSCWSILNDALLTPLYAIH-PPHVLACASILLTTRL 245
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1102229929|ref|XP_019030396.1| (cyclin-dependent protein kinase regulator [Tsuchiyaea wingfieldii CBS 7118] >gi|1062146126|gb|ODN92769.1| cyclin-dependent protein kinase regulator [Tsuchiyaea wingfieldii CBS 7118]) HSP 1 Score: 97.4413 bits (241), Expect = 4.399e-19 Identity = 71/231 (30.74%), Postives = 119/231 (51.52%), Query Frame = 0
Query: 33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSL-DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
D+R ++ +AG ++LPQ+T+ATA ++ HRF+ V S+ ++ N D+ + + LFLASK+ E P R+RD IN L A+ +D PS+ TL +G A GN D+ R K I D +W+ K+ + +E +L+ LGF+++ + Y ++NY + L + + ++ W++LND L +P + P H A ++ LA RL
Sbjct: 31 DLRTAGCMLIQEAGVMMKLPQKTMATAQVLLHRFYYVSSMYSFSVN---DISI-SALFLASKLRETPVRLRDLINTY------LFLTARIRHLLDL--PSD--QHLTLDHL------SSGSASRASNGN-DIWRGFKFEIPGFHDEVFWEWKDVITASEMQILKRLGFNMQVDLPYNHMINYLKILDLVFKEEIAQMCWSILNDMLLTPLYAIH-PPHTLACISILLATRL 239
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1183308428|gb|ORX38608.1| (putative cyclin-dependent protein kinase regulator [Kockovaella imperatae]) HSP 1 Score: 94.7449 bits (234), Expect = 4.881e-18 Identity = 72/247 (29.15%), Postives = 123/247 (49.80%), Query Frame = 0
Query: 33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINC-VYVVRK----------QLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSV-KGNILSL----DRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
D+R ++ +AG L LPQ TIATA ++ +RF+ V S+ + N + + L+L+SK+ E P R+RD IN +++V + Q LA + + G + E W G GNG + + K + + KG + D +WD K+ +V +E +L+ LGF+++ + Y ++NY + L P + + W++LND+L +P + P H A A++ L+ RLL
Sbjct: 31 DLRVVGCMMIQEAGIMLELPQSTIATAQVLLNRFYYVSSMLSFGVND----ISISALYLSSKLNETPVRLRDLINTYIFLVARINHLLSLHADQPLASPSTASSSKSASKPWGDEPEP-----WRIGLGNGQSTAKGKDKAEDQDGIWKGFRFEVPGFHDEVFWDWKDVIVGSEMQILKRLGFNMQVDLPYSHVINYCKILDLVFEPDVAQTCWSILNDALLTPLYAIHQP-HTLACASILLSTRLL 267
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1062152203|gb|ODN98820.1| (cyclin-dependent protein kinase regulator [Cryptococcus depauperatus CBS 7855]) HSP 1 Score: 93.5893 bits (231), Expect = 7.163e-18 Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 0
Query: 33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGG---DAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
D+R ++ +AG L LPQ T+ATA ++ HRF+ V SL + N D+ +++ LFLASK+ E R+RD IN VY+V LLA+ Q + + P + G E + W N N P D +WD K+ V +E +L+ LGF+++ + Y ++NY R L + ++ W++LND L +P + P H A ++ L RLL
Sbjct: 31 DLRVVGCMLIQEAGIMLDLPQNTMATAQVLLHRFYYVSSLASFGVN---DISISS-LFLASKLCETTVRLRDLIN-VYLV---LLARIQHILSLSSDYPLQSGILSHEEDAQDPIWRDFNFNIPRPH-------------------DEVFWDWKDVVTASEMQILKRLGFNMQVDLPYSHMINYLRILDLVFEDQVGQMCWSVLNDMLLTPLYAIH-PPHTLACISILLTTRLL 236
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|831274269|ref|XP_012684314.1| (PREDICTED: cyclin-K, partial [Clupea harengus]) HSP 1 Score: 94.7449 bits (234), Expect = 1.005e-17 Identity = 70/230 (30.43%), Postives = 104/230 (45.22%), Query Frame = 0
Query: 35 RQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGGDAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYARSLRARP----VLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRL 260
R++ R + D G RL L +T+AT + FHRF+ S +++ R V CLFLA KVEE P++ +D I + LL Q +F D + G+ E + PG L G T +E V+ E+++L+ + FDL+ Y+ LL YA+ L+ LV++AW +NDSL + L AVA + LA RL
Sbjct: 50 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRY----VTGACCLFLAGKVEETPKKCKDIIKTA----RSLLNDVQFAQFGDDPKVFQPGNTEL-----------HSAYPGWLVGKT--------------------QEEVMVLERILLQTIKFDLQVEHPYQFLLRYAKQLKGDKNKVQKLVQMAWTFVNDSLCT-MLSLQWEPEIIAVAVMYLAGRL 239
BLAST of EWM30155.1 vs. NCBI_GenBank
Match: gi|1062139726|gb|ODN86417.1| (cyclin-dependent protein kinase regulator [Cryptococcus depauperatus CBS 7841]) HSP 1 Score: 92.8189 bits (229), Expect = 1.376e-17 Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 0
Query: 33 DIRQDSVRVLLDAGRRLRLPQETIATAALIFHRFFAVRSLREYARNRRLDVVLTTCLFLASKVEEQPRRIRDAINCVYVVRKQLLAQAQGTRFVDTCAPSEGG---DAETLSERGWVHGNGNGGAPGELKGNTDLARSVKGNILSLDRGYWDLKESVVDTEQLVLRILGFDLETFMSYRLLLNYAR--SLRARPVLVEVAWALLNDSLFSPACCLALPSHAQAVAALDLAQRLL 261
D+R ++ +AG L LPQ T+ATA ++ HRF+ V SL + N D+ +++ LFLASK+ E R+RD IN VY+V LLA+ Q + + P + G E + W N N P D +WD K+ V +E +L+ LGF+++ + Y ++NY R L + ++ W++LND L +P + P H A ++ L RLL
Sbjct: 31 DLRVVGCMLIQEAGIMLDLPQNTMATAQVLLHRFYYVSSLASFGIN---DISISS-LFLASKLCETTVRLRDLIN-VYLV---LLARIQHILSLPSDYPLQSGILSHEEDAQDPIWRDFNFNIPRPH-------------------DEVFWDWKDVVTASEMQILKRLGFNMQVDLPYSHMINYLRILDLVFEDQVGQMCWSVLNDMLLTPLYAIH-PPHTLACISILLTTRLL 236 The following BLAST results are available for this feature:
BLAST of EWM30155.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|