EWM25402.1, cds5253 (CDS) Nannochloropsis gaditana

Overview
NameEWM25402.1
Unique Namecds5253
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:566758..566777 +
Alignment locationCM002465.1:566969..567156 +
Alignment locationCM002465.1:567247..567365 +
Alignment locationCM002465.1:567475..567584 +
Alignment locationCM002465.1:567696..567798 +
Alignment locationCM002465.1:567920..568729 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25402.1
Productproteasome component domain protein
Orig transcript idgnl|cribi|Naga_100005g55.6696.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:566758..566777 +
CM002465.1supercontigCM002465.1:566969..567156 +
CM002465.1supercontigCM002465.1:567247..567365 +
CM002465.1supercontigCM002465.1:567475..567584 +
CM002465.1supercontigCM002465.1:567696..567798 +
CM002465.1supercontigCM002465.1:567920..568729 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR027528eIF3m
IPR011991WHTH_DNA-bd_dom
IPR000717PCI_dom
Homology
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|585107163|gb|EWM25402.1| (proteasome component domain protein [Nannochloropsis gaditana])

HSP 1 Score: 908.672 bits (2347), Expect = 0.000e+0
Identity = 449/449 (100.00%), Postives = 449/449 (100.00%), Query Frame = 0
Query:    1 MGRSLEGLPRLRRKATVGSRLPSVEMPADSASVSSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQESQQYVRSSHSN 449
            MGRSLEGLPRLRRKATVGSRLPSVEMPADSASVSSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQESQQYVRSSHSN
Sbjct:    1 MGRSLEGLPRLRRKATVGSRLPSVEMPADSASVSSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQESQQYVRSSHSN 449          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|298714519|emb|CBJ27541.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 279.641 bits (714), Expect = 1.334e-86
Identity = 153/377 (40.58%), Postives = 228/377 (60.48%), Query Frame = 0
Query:   51 RLIKSIADALPESTRSQFRDEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPED-LPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAAEYEEIPYEAVSATLQVPHED-VESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLRE 425
            +L++++A A+P S ++QF          A A  LI  +L Q  VI+      D+EG + +L SLL +  +P+  +P +  +I + +   V+D+  LRLKL+ N YN+L   T+ + +VLL++I YA++ K + +LS FFA +++W K W  LS  D+R+LYLL+S+TL   GK  E+Q FL+KYLAT+          V  A AV+G IGAV+ P+ +     +LL + AV +L +DP + AVHELL IF   KL +   + ++N   L  N +  +     MRLLSL  LA E+EEIPY+ V+ TLQV  +D VE WV++AI   L+EAKMDQ Q VV++ R ++R F    W  LQ KL  W  NV +LL ++++
Sbjct:   19 KLVEAVAKAMP-SGQAQFSKACTALITNANAPDLIRKVLEQRNVILEMSKTDDVEGCFGILFSLLFKTDNPKAAVPALSMEIATKVLEKVDDRAPLRLKLVTNLYNMLPVRTAGQLEVLLLVIRYAKEAKLVAMLSSFFAGVDDWIKGW-ELSVADQRRLYLLISDTLGSEGKAVESQKFLMKYLATYDGATTAELAEVKAA-AVRGCIGAVKSPIVSFTEQHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQK 392          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|22330807|ref|NP_186869.2| (Proteasome component (PCI) domain protein [Arabidopsis thaliana] >gi|17065292|gb|AAL32800.1| Unknown protein [Arabidopsis thaliana] >gi|20259990|gb|AAM13342.1| unknown protein [Arabidopsis thaliana] >gi|332640257|gb|AEE73778.1| Proteasome component (PCI) domain protein [Arabidopsis thaliana] >gi|1032291037|gb|OAP05364.1| hypothetical protein AXX17_AT3G01390 [Arabidopsis thaliana])

HSP 1 Score: 214.927 bits (546), Expect = 1.525e-61
Identity = 135/381 (35.43%), Postives = 215/381 (56.43%), Query Frame = 0
Query:   57 ADALPESTRSQFRDEAKECTDYARARKLIEL---ILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLA-GSGKVAEAQLFLIKYLATFRETDPG-LDTPVTVALAVKGVIGAVREPLNALRSAS----DLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKK 427
            ADA PE+   +     +E  +   A K +EL   ++  + ++ ++ +EKD+E +Y ++ S++     PE +  MV  I S +     DK SLRLK+L N YNL+    + RFQV +  +  A D K  + +   F  ++N+ K W ++  +D+R+L+L ++  L      V E+  FL KYLATF   D   LD         +    AVR  +  ++++S    DLL LPAV +L  D  +  V++LL+IF   +L   TE+++ N G L++ G+  E     MRLLSL  LA+ E  +IPY ++  TLQV  +DVE W+V+AITA+L+E KMDQ  +V++V+R+S R F  + W  L+ KL  W+ N+SS++ ++   K
Sbjct:   26 ADAGPEAAEPEITRLCREAEESMVAEKWLELSSLMVTSAELVSSKISEKDLECTYTIICSIVKNAKSPEQVLEMVKAIASKVAQQPSDKASLRLKILFNLYNLVDHPYA-RFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEW-NIDIKDQRELFLAIANVLKENKSLVNESLKFLTKYLATFSNEDAQVLD---------EAKEEAVRAVIEFVKASSIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKMRLLSLVDLASDESGKIPYTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQSLRTKLATWKDNISSIITTIESNK 395          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|1124040729|ref|XP_019578437.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like, partial [Rhinolophus sinicus])

HSP 1 Score: 212.616 bits (540), Expect = 2.636e-61
Identity = 130/361 (36.01%), Postives = 213/361 (59.00%), Query Frame = 0
Query:   84 LIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQL-FLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGAR--TQASRVQESQ 440
            L  L++  + ++ ++ ++KD+E +Y ++ SL+  ++ PE++  MV  I S +     DK SLRLK+L N YNLL    + RFQV +  +E A + K  D +   F  ++++ K W ++  +D+R+L+L ++  L  +  +A+  L F+ KYLATF   D  + +      AV+ VI  V+ P        DLL +PAV +L  DP +  V++LL+IF   +L    E+++ N G+L+   +  E     MRLLSL  LA+ E  +IPY ++ +TLQV  E+VE WVV+AITA+L++ KMDQ  +VV+V+R + R F  + W  L+ KL  WR N+++++ +++  K     TQAS   E+Q
Sbjct:    1 LATLMVTSADLVSSKISDKDLECTYTIICSLVKNVNSPEEVLEMVKAITSKVVQHPSDKASLRLKILYNLYNLLDHPNA-RFQVYMKALELAVNGKVTDYIVPSFKKIDSFLKEW-NIDMKDQRELFLAIANVLRENKSLAKESLQFVTKYLATFSNEDTQVLSEAKEE-AVRAVIEFVKAPS---IFQCDLLEMPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGLLQTYELVEEDCVAKMRLLSLVDLASDESGKIPYASIKSTLQVNDEEVELWVVKAITAKLVDCKMDQMNQVVIVSRCAEREFGQKQWQSLRTKLAAWRDNIANVISTIQANKATEEGTQASSSSETQ 355          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|297828662|ref|XP_002882213.1| (eukaryotic translation initiation factor 3 subunit M [Arabidopsis lyrata subsp. lyrata] >gi|297328053|gb|EFH58472.1| proteasome family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 213.386 bits (542), Expect = 7.015e-61
Identity = 132/376 (35.11%), Postives = 213/376 (56.65%), Query Frame = 0
Query:   57 ADALPESTRSQFRDEAKECTDYARARKLIEL---ILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLA-GSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKK 427
            ADA PE+   +     +E  +     K +EL   ++  + ++ ++ +EKD+E +Y ++ S++ ++  PED+  +V  I S +     DK SLRLK+L N YNL+    + RFQV +  +  A D K  + +   F  ++N+ K W ++  +D+R+L+L ++  L      V E+  FL KYLATF   D  +        AV+ VI  V+    +     DLL LPAV +L  D  +  V++LL+IF   +L   TE+++ NP  L++ G+  E     MRLLSL  LA+ E  +IPY ++   LQV  EDVE W+V+AITA+L++ KMDQ  +VV+V+R+S R F  + W  L+ KL  W+ N+S+++ ++   K
Sbjct:   26 ADAGPEAAEPEITRLCREAEESIVKEKWLELSTLMVTSAELVSSKISEKDLECTYTIICSIVKKVESPEDVLAIVKAIASEVAQQPSDKASLRLKILFNLYNLVDHPYA-RFQVYMKALTLAVDGKVTEYIVSSFKKIDNFLKEW-NIDIKDQRELFLAIANVLKENKSLVNESLKFLTKYLATFSNEDTQVLDEAKEE-AVRAVIEFVKA---STIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANPEFLQSYGLADEDCVSKMRLLSLVDLASDESGKIPYASIKDALQVNEEDVELWIVKAITAKLIDCKMDQMNQVVIVSRSSEREFGTKQWQSLRTKLATWKDNISNIITTIESNK 395          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|567174274|ref|XP_006400084.1| (hypothetical protein EUTSA_v10013660mg [Eutrema salsugineum] >gi|557101174|gb|ESQ41537.1| hypothetical protein EUTSA_v10013660mg [Eutrema salsugineum])

HSP 1 Score: 212.616 bits (540), Expect = 1.365e-60
Identity = 135/376 (35.90%), Postives = 216/376 (57.45%), Query Frame = 0
Query:   57 ADALPESTRSQFR---DEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQL-FLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKK 427
            ADA PE+   Q      EA+E     R   L  L++  + ++ ++ +EKD+E +Y ++ SL+     PE++  MV  I S +     DK SL LK+L N YNLL    + RFQV +  +E A + K  + +   F  ++++ K W ++   D+R+L+L ++  L  +  +A+  L F+ KYLATF + D  + +      AV+ VI  VR P N  +   DLL +PAV +L  DP +  V++LL+IF   +L    E+++ N G L+  G+  E     MRLLSL  LA+ E  +IPY ++  TLQV  E++E WVV+AITA+L++ KMDQ  +VV+V+R++ R F  + W  L+ KL  WR N+ +++ +++  K
Sbjct:   26 ADAGPEAAEPQVTRLCSEAEESIVAGRWLDLATLMVTSADLVSSKISEKDLECTYTIICSLVKNAKSPEEVLEMVKAIASKVVQQPNDKASLLLKILFNLYNLLDHPNA-RFQVYMKALELAVNGKVTEYIVPSFKKIDSFLKEW-NIDINDQRKLFLAIANVLRENKSLAKDSLEFVTKYLATFSDEDTQVLSEAKEE-AVRAVIEFVRAP-NKFQC--DLLEMPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTYGLIEEDCLAKMRLLSLVDLASNESGKIPYASIKNTLQVNDEEIELWVVKAITAKLVDCKMDQMNQVVIVSRSAEREFGQKQWQSLRIKLAAWRDNIENVISTIQANK 395          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|645249795|ref|XP_008230907.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Prunus mume])

HSP 1 Score: 211.075 bits (536), Expect = 4.161e-60
Identity = 146/409 (35.70%), Postives = 225/409 (55.01%), Query Frame = 0
Query:   34 SSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFR---DEAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVA-EAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQ 437
            +SE    LS+V  T+      S ADA PE    Q      EA+EC   AR   L+ L+L  + VI+++ +EKD+E  + V+ +++ +   P++   M   I + +     DKP+LRLK+L N YNLL++  S RF V L  +  A + K  + +   F  +E++ K W ++   DERQL+L +S  L     +A E+  FL KYLATF   D  + +      AV+ ++  V+ P +  +   DLL +PAV +L  D  H   ++LL+IF   +L    E++  N  +L+  G+  E     MRL+SL  L + E   IPY  +  TLQ+  E VE WVV+AITA+L++ KMDQ  +VV+V+R + R F  Q WL L+ KL  WR NV++++ ++R  + A   +  VQ
Sbjct:    7 TSEEDPALSVVRFTSE----LSWADAGPEVAEPQVSRLCTEAQECMVMARWFDLVSLMLTSADVILSKVSEKDLECIFTVICNVVTKSESPDEALEMAKLISAKITQQPSDKPALRLKILFNLYNLLENPYS-RFFVYLSALNLAINGKVTEHVIPSFKKIESFLKEW-NIGVSDERQLFLTISNVLREHKSLAKESFKFLSKYLATFSGEDAYILSEAKEE-AVRTIVEFVKAP-DLFQC--DLLDMPAVGQLEKDAKHALAYQLLKIFLTQRLDAYLEFQAANSTLLKGYGLVHEDCITKMRLISLVDLGSDESGRIPYNLIRDTLQINDEGVELWVVKAITAKLMDCKMDQMNQVVIVSRCTERVFGQQQWLTLRSKLATWRGNVANVISTIRANRIAEDGSQAVQ 405          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|674244913|gb|KFK37678.1| (hypothetical protein AALP_AA3G014500 [Arabis alpina])

HSP 1 Score: 210.305 bits (534), Expect = 9.002e-60
Identity = 134/376 (35.64%), Postives = 212/376 (56.38%), Query Frame = 0
Query:   57 ADALPESTRSQFRDEAKECTDYARARKLIEL---ILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETL-AGSGKVAEAQLFLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKK 427
            ADA PE+   +     +E  +   A K +EL   ++  + ++ ++ +EKD+E +Y ++ SL+  ++ PED+  MV  I S +     DK SLRLK+L N YNLL    + RFQV +  +  A D K  + +   F  ++++ K W ++  +D+R L+L ++  +      V E+  FL KYLATF   D  +      A AV+ VI  V+    +     DLL LPAV +L  D  +  V++LL+IF   +L   TE+++ N G LE  G+  E     MRLLSL  LA+ E  +IPY ++  TLQV  E+VE W+V AI+A+L++ KMDQ  +VV+V+R S R F  + W  L+ KL  W+ N+++++ ++   K
Sbjct:   26 ADAGPEAAEPEITRLCREAEESIVAGKWLELATLMVTSAELVSSKISEKDLECTYTIICSLVKNVNSPEDVLEMVKAISSKVVQQPSDKASLRLKILFNLYNLLAHPYA-RFQVYMKALALAVDGKVTEFIIPSFKKIDSFLKEW-NVEIKDQRDLFLAIANVVRENKSLVKESLTFLTKYLATFSNEDAQVLDEAKEA-AVRAVIEFVKA---STIFQCDLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLETYGLVDEDCVTKMRLLSLVDLASDESGKIPYTSIKDTLQVNAEEVELWIVRAISAKLIDCKMDQMNQVVIVSRCSEREFGSKQWQSLRSKLATWKDNITNIISTIESNK 395          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|567204095|ref|XP_006408436.1| (hypothetical protein EUTSA_v10020815mg [Eutrema salsugineum] >gi|557109582|gb|ESQ49889.1| hypothetical protein EUTSA_v10020815mg [Eutrema salsugineum])

HSP 1 Score: 209.92 bits (533), Expect = 1.250e-59
Identity = 143/401 (35.66%), Postives = 224/401 (55.86%), Query Frame = 0
Query:   34 SSEPSSLLSIVDRTAYDRLIKSIADALPESTRSQFRDEAKECTDYARARKLIEL---ILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETL-AGSGKVAEAQLFLIKYLATFRETDPG-LDTPVTVALAVKGVIGAVREPLNALR-SASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKK 427
            +SE    L++V  T+      + ADA PE+   +     +E  +   A K +EL   ++  + ++ ++  EKD+E +Y ++ SL+   ++ ED+  MV  I S +     DK SLRLK+L N YNLL    + RFQV +  +  A D K ++ +   F  ++N+ K W ++ ++D+R+L+L ++  L      V E+  FL KYLATF   D   LD    VA      + AV E + A      DLL LPAV +L  D  ++ V++LL+IF   +L    E+++ N G LE+ G+  E     MRLLSL  LA+ E  +IPY  +  TLQV  E+VE W+V+AITA+L++ KMDQ  +VV+V+R S R F  + W  L+ KL  WR N+++++ ++   K
Sbjct:    7 TSEEDPFLAVVRSTSQ----LAWADAGPEAAEPEITRLCREAEESIVAGKWLELASLMVTSAELVSSKIPEKDLECTYTIICSLVKNANNLEDVLEMVKVISSKVVQQPNDKASLRLKILFNLYNLLDHPYA-RFQVYMKALTLAVDGKVIEYIVPSFKKIDNFLKEW-NIDSKDQRELFLAIANVLRENKSLVKESLKFLTKYLATFSNDDAQVLDEAKEVA------VRAVTEFVKASSIFQCDLLDLPAVAQLEKDTKYEPVYQLLKIFLTQRLNAFMEFKNANSGFLESYGLVDEDCVTKMRLLSLVDLASDESGKIPYTLIKDTLQVNEEEVELWIVKAITAKLIDCKMDQMNQVVIVSRCSEREFGSKQWQSLRTKLATWRDNIANIISTIEANK 395          
BLAST of EWM25402.1 vs. NCBI_GenBank
Match: gi|727562828|ref|XP_010453700.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit M [Camelina sativa])

HSP 1 Score: 209.534 bits (532), Expect = 1.719e-59
Identity = 135/386 (34.97%), Postives = 215/386 (55.70%), Query Frame = 0
Query:   57 ADALPESTRSQFRD---EAKECTDYARARKLIELILAQSAVIMARPTEKDIEGSYQVLISLLDRLSDPEDLPIMVDKILSNLRASVEDKPSLRLKLLCNFYNLLKSGTSERFQVLLVIIEYARDTKQLDILSDFFADLENWKKNWRHLSAEDERQLYLLVSETLAGSGKVAEAQL-FLIKYLATFRETDPGLDTPVTVALAVKGVIGAVREPLNALRSASDLLSLPAVKRLASDPAHKAVHELLEIFCFGKLADLTEYEDRNPGVLEANGVGREKAFRDMRLLSLSLLAA-EYEEIPYEAVSATLQVPHEDVESWVVEAITARLLEAKMDQEQEVVMVTRASHRHFSHQNWLRLQEKLHVWRQNVSSLLVSLREKKGARTQASRVQ 437
            ADA PE    Q      EA+E     R   L  L++  + ++  + +EKD+E +Y ++ SL+  +  PE++  MV  I S +    +DK SLRLK+L N YNLL    + RFQV +  +E A + K  + +   F  ++++ K W  +  +D+R+++L +++ L  +  +AE  L F+ KYLATF   D  + +      AV+ VI   + P        DLL +PAV +L  DP    V++LL+IF   +L    E+++ N G L+  G+  E     MRLLSL  LA+ E  +I Y ++  TLQV  E+VE WVV+AITA+L++ KMDQ  +VV+V+R + R F  + W  L+ KL  WR N+++++ +++  K     +S  Q
Sbjct:   26 ADAGPEVAEPQVSRLCREAEESIRDCRWLDLATLMVTSADLVSTKISEKDLECTYTIICSLVKNVKTPEEVLEMVKAIASKVVQQPDDKASLRLKILFNLYNLLDHPNA-RFQVYMKSLELAVNGKITEYIVPSFKKIDSFLKEW-SIDIKDQREVFLAIAKVLRENKSLAEESLQFVTKYLATFSNDDAQVLSEAKEE-AVRAVIEFFKAPSIC---QCDLLDMPAVAQLEKDPNTAPVYQLLKIFLTQRLDAFMEFQNANSGFLQTYGLVEENCVSKMRLLSLVDLASDESGKISYASIKNTLQVNEEEVELWVVKAITAKLVDCKMDQMNQVVIVSRCAERDFGQKQWQSLRTKLAAWRDNITNVINTIQANKVTEEASSGTQ 405          
The following BLAST results are available for this feature:
BLAST of EWM25402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107163|gb|EWM25402.1|0.000e+0100.00proteasome component domain protein [Nannochlorops... [more]
gi|298714519|emb|CBJ27541.1|1.334e-8640.58conserved unknown protein [Ectocarpus siliculosus][more]
gi|22330807|ref|NP_186869.2|1.525e-6135.43Proteasome component (PCI) domain protein [Arabido... [more]
gi|1124040729|ref|XP_019578437.1|2.636e-6136.01PREDICTED: eukaryotic translation initiation facto... [more]
gi|297828662|ref|XP_002882213.1|7.015e-6135.11eukaryotic translation initiation factor 3 subunit... [more]
gi|567174274|ref|XP_006400084.1|1.365e-6035.90hypothetical protein EUTSA_v10013660mg [Eutrema sa... [more]
gi|645249795|ref|XP_008230907.1|4.161e-6035.70PREDICTED: eukaryotic translation initiation facto... [more]
gi|674244913|gb|KFK37678.1|9.002e-6035.64hypothetical protein AALP_AA3G014500 [Arabis alpin... [more]
gi|567204095|ref|XP_006408436.1|1.250e-5935.66hypothetical protein EUTSA_v10020815mg [Eutrema sa... [more]
gi|727562828|ref|XP_010453700.1|1.719e-5934.97PREDICTED: eukaryotic translation initiation facto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5266rna5266Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications