EWM25411.1, cds5252 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|585107172|gb|EWM25411.1| (N-acetylglucosaminyl phosphatidylinositol deacetylase [Nannochloropsis gaditana]) HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0 Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query: 1 MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347
MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL
Sbjct: 1 MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|553196587|ref|XP_005856378.1| (N-acetylglucosaminylphosphatidylinositol deacetylase, partial [Nannochloropsis gaditana CCMP526] >gi|422292679|gb|EKU19981.1| N-acetylglucosaminylphosphatidylinositol deacetylase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 333.954 bits (855), Expect = 5.099e-113 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query: 191 VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347
VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL
Sbjct: 1 VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 157
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|1130648255|ref|XP_010940401.2| (PREDICTED: LOW QUALITY PROTEIN: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Elaeis guineensis]) HSP 1 Score: 192.586 bits (488), Expect = 7.247e-56 Identity = 106/252 (42.06%), Postives = 144/252 (57.14%), Query Frame = 0
Query: 76 QPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCL-NDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
+PA L + VLLVVAHPDDE+MFF+PTI G + +LC+STGN G G VR EL +AC +L +P +Q+ I+D +QD N W L II D +K D+ ++TFD GVSGHPNH A+ + L+ SK R ++ W+L STN+ RKY GP+DI W+ + C SLS R + C+ N P +Y+AM H SQ++W+R+LFV+FS YTY+NTL
Sbjct: 45 KPAFLSSSGSGKKRNVLLVVAHPDDESMFFAPTILFLTSEGHNPHILCMSTGNAEGVGNVRKEELYRACAVLKIPLQQVKILDHPDLQDGFNNQWDHKLLSTIIEDEIKMWDIDSLITFDKFGVSGHPNHRAVHHGICMLLSDNSK-----RNIEAWELISTNILRKYSGPVDI----------WLSILC------------SLSNPGRQMYCIPNSLPRKSYRAMAEHESQWIWFRKLFVLFSNYTYMNTL 269
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|567205161|ref|XP_006408676.1| (hypothetical protein EUTSA_v10002077mg [Eutrema salsugineum] >gi|557109832|gb|ESQ50129.1| hypothetical protein EUTSA_v10002077mg [Eutrema salsugineum]) HSP 1 Score: 189.889 bits (481), Expect = 5.416e-55 Identity = 108/253 (42.69%), Postives = 146/253 (57.71%), Query Frame = 0
Query: 74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
S + A L +G + VL V+AHPDDE+MFFSPTI++ ++ +LCLSTGN G G +R EL QAC +L VP RQL I+D +QD W L II +AV +D+ ++TFD+ GVSGH NH + V + S+ + +K W+L S N+FRKY GP+DI WL I LSA RH + L+ +N++P + +AM H SQ+VW+R+LFVIFS YTY NTL
Sbjct: 28 SFKAAILDDGITPHKKNVLFVIAHPDDESMFFSPTINYLTTNAYNLHILCLSTGNADGMGSIRKDELHQACAVLRVPLRQLKILDHPNLQDGFGQVWSHDLLTEIIDEAVTNHDIHTIITFDNYGVSGHSNHRDVHHGVLKFLMINSE-----KNIKAWELVSFNIFRKYCGPVDI--------WLSI--------LSAK--RHPSKRHPSKLIIINEQPWKSLEAMAQHLSQWVWFRKLFVIFSSYTYTNTL 257
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923714788|ref|XP_013663523.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X1 [Brassica napus]) HSP 1 Score: 186.808 bits (473), Expect = 7.319e-54 Identity = 107/255 (41.96%), Postives = 145/255 (56.86%), Query Frame = 0
Query: 72 KGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
K + Q L +G + VL V++HPDDE+MFFSPTI++ ++ +LCLSTGN G G +R ELRQAC +L VP +QLTI+D +QD W L II + V +D+ ++TFD+ GVSGH NH R V + S+ R +K W+L S N+ RKY GP+DI WL I LSA RH + +N++P+ +Y+AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 26 KSTSQATFLDDGKTHNKKNVLFVISHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKDELRQACAVLRVPLQQLTIVDHPNLQDGFGQVWSHDLLEEIISEEVTSHDIHTIITFDNYGVSGHCNH----RGVVKFLQTNSE-----RNIKAWELVSLNIIRKYCGPIDI--------WLSI--------LSAK--RHGSK-----VSIINEQPLKSYEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 248
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|1072950726|ref|XP_018486053.1| (PREDICTED: LOW QUALITY PROTEIN: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Raphanus sativus]) HSP 1 Score: 185.652 bits (470), Expect = 1.865e-53 Identity = 104/253 (41.11%), Postives = 144/253 (56.92%), Query Frame = 0
Query: 74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
S + A L +G + VL V+AHPDDE+MFFSPTI++ ++ +LCLSTGN G G +R EL QAC +L VP +QL ++D +QD W L II V +D+ ++TFD+ GVSGH NH + R V + S+ R +K W+L S N+FRK GP+DI WL I LSA L G+ ++ N++P+ +++AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 28 SSEAAVLDDGETHHKKNVLFVIAHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKEELHQACAVLRVPLQQLKMVDHPNLQDGFAQVWSHDLLTEIIGKEVNNHDIHTIITFDNYGVSGHCNHRDVHRGVVTFLQSNSE-----RNIKAWELVSLNIFRKXCGPIDI--------WLSI--------LSA-----KLHGSK--VIVTNEQPLKSFEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 252
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|922512330|ref|XP_013591872.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X2 [Brassica oleracea var. oleracea]) HSP 1 Score: 184.496 bits (467), Expect = 4.893e-53 Identity = 98/253 (38.74%), Postives = 142/253 (56.13%), Query Frame = 0
Query: 74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
S + A L +G + VL V+AHPDDE+MFFSPTI++ G++ +LC STGN G G +R EL QAC +L VP QL ++D +QD W L +I + V +D+ ++TFD+ GVSGH NH + V + S+ R +K W+L S N+FRKY GP+DI W+ + ++++ S + +N++P +Y+AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 28 SSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASSGYNLHMLCFSTGNADGMGSIRKDELHQACAVLRVPLEQLKVLDHPNLQDGFGQVWSHDLLAKVIGEEVSNHDIHTIITFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDI----------WLSIFSSKRNPSKA-------------IIINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|685332880|ref|XP_009104118.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica rapa] >gi|685332883|ref|XP_009104120.1| PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica rapa]) HSP 1 Score: 184.496 bits (467), Expect = 5.275e-53 Identity = 99/253 (39.13%), Postives = 143/253 (56.52%), Query Frame = 0
Query: 74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
S + A L +G + VL V+AHPDDE+MFFSPTI++ G++ +LC STGN G G +R EL QAC +L VP +QL ++D +QD W L +I + V +D+ +VTFD+ GVSGH NH + V + S+ R +K W+L S N+FRKY GP+DI W+ + ++++ S + +N++P +Y+AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 28 SSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASNGYNLHMLCFSTGNADGTGSIRKDELHQACAVLRVPLQQLKVLDHPDLQDGFGQVWSHDLLAKVIGEEVSNHDIHTIVTFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDI----------WLSIFSSKRNPSKA-------------IIINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923714792|ref|XP_013663524.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X2 [Brassica napus]) HSP 1 Score: 183.341 bits (464), Expect = 1.315e-52 Identity = 107/255 (41.96%), Postives = 145/255 (56.86%), Query Frame = 0
Query: 72 KGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
K + Q L +G + VL V++HPDDE+MFFSPTI++ ++ +LCLSTGN G G +R ELRQAC +L VP +QLTI+D +QD W L II + V +D+ ++TFD+ GVSGH NH R V + S+ R +K W+L S N+ RKY GP+DI WL I LSA RH + +N++P+ +Y+AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 26 KSTSQATFLDDGNK---KNVLFVISHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKDELRQACAVLRVPLQQLTIVDHPNLQDGFGQVWSHDLLEEIISEEVTSHDIHTIITFDNYGVSGHCNH----RGVVKFLQTNSE-----RNIKAWELVSLNIIRKYCGPIDI--------WLSI--------LSAK--RHGSK-----VSIINEQPLKSYEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 245
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923663763|ref|XP_013648364.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica napus]) HSP 1 Score: 182.956 bits (463), Expect = 2.399e-52 Identity = 101/254 (39.76%), Postives = 138/254 (54.33%), Query Frame = 0
Query: 73 GSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
S + A L +G + VL V+AHPDDE+MFFSPTI++ G++ +LC STGN G G +R EL QAC +L VP +QL ++D QD W L II + V +D+ ++TFD+ GVSGH NH + V + S+ R +K W+L S N+FRKY GP+DI I +S RH +N++P +Y+AM H SQ+VW+R+LFV FS YTY NTL
Sbjct: 27 SSSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASNGYNLHVLCFSTGNADGMGSIRKDELHQACAVLRVPLQQLKVLDHPDFQDGFGQVWSHDLLAKIISEEVSNHDIHTIITFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDIWLSIFSSK------------------RHPSKAT-----IINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249 The following BLAST results are available for this feature:
BLAST of EWM25411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|