EWM25411.1, cds5252 (CDS) Nannochloropsis gaditana

Overview
NameEWM25411.1
Unique Namecds5252
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:565210..565359 +
Alignment locationCM002465.1:565454..565682 +
Alignment locationCM002465.1:565793..565902 +
Alignment locationCM002465.1:565996..566076 +
Alignment locationCM002465.1:566147..566620 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25411.1
ProductN-acetylglucosaminyl phosphatidylinositol deacetylase
Orig transcript idgnl|cribi|Naga_100005g54.6705.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:565210..565359 +
CM002465.1supercontigCM002465.1:565454..565682 +
CM002465.1supercontigCM002465.1:565793..565902 +
CM002465.1supercontigCM002465.1:565996..566076 +
CM002465.1supercontigCM002465.1:566147..566620 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024078LmbE-like_dom
IPR003737GlcNAc_PI_deacetylase-related
Homology
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|585107172|gb|EWM25411.1| (N-acetylglucosaminyl phosphatidylinositol deacetylase [Nannochloropsis gaditana])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query:    1 MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347
            MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL
Sbjct:    1 MIVCTVCERQINLCCHMCGSPQPIHRAYRLNMHWSKLVLLHADEMATLATVSTRQRALMQRRKARSRGDPTKGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|553196587|ref|XP_005856378.1| (N-acetylglucosaminylphosphatidylinositol deacetylase, partial [Nannochloropsis gaditana CCMP526] >gi|422292679|gb|EKU19981.1| N-acetylglucosaminylphosphatidylinositol deacetylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 333.954 bits (855), Expect = 5.099e-113
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:  191 VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 347
            VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL
Sbjct:    1 VVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTLWEAGEGRHVDSNHAINEEWNL 157          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|1130648255|ref|XP_010940401.2| (PREDICTED: LOW QUALITY PROTEIN: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Elaeis guineensis])

HSP 1 Score: 192.586 bits (488), Expect = 7.247e-56
Identity = 106/252 (42.06%), Postives = 144/252 (57.14%), Query Frame = 0
Query:   76 QPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCL-NDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            +PA L        + VLLVVAHPDDE+MFF+PTI      G +  +LC+STGN  G G VR  EL +AC +L +P +Q+ I+D   +QD   N W    L  II D +K  D+  ++TFD  GVSGHPNH A+   +  L+   SK     R ++ W+L STN+ RKY GP+DI          W+ + C            SLS   R + C+ N  P  +Y+AM  H SQ++W+R+LFV+FS YTY+NTL
Sbjct:   45 KPAFLSSSGSGKKRNVLLVVAHPDDESMFFAPTILFLTSEGHNPHILCMSTGNAEGVGNVRKEELYRACAVLKIPLQQVKILDHPDLQDGFNNQWDHKLLSTIIEDEIKMWDIDSLITFDKFGVSGHPNHRAVHHGICMLLSDNSK-----RNIEAWELISTNILRKYSGPVDI----------WLSILC------------SLSNPGRQMYCIPNSLPRKSYRAMAEHESQWIWFRKLFVLFSNYTYMNTL 269          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|567205161|ref|XP_006408676.1| (hypothetical protein EUTSA_v10002077mg [Eutrema salsugineum] >gi|557109832|gb|ESQ50129.1| hypothetical protein EUTSA_v10002077mg [Eutrema salsugineum])

HSP 1 Score: 189.889 bits (481), Expect = 5.416e-55
Identity = 108/253 (42.69%), Postives = 146/253 (57.71%), Query Frame = 0
Query:   74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            S + A L +G     + VL V+AHPDDE+MFFSPTI++     ++  +LCLSTGN  G G +R  EL QAC +L VP RQL I+D   +QD     W    L  II +AV  +D+  ++TFD+ GVSGH NH  +   V   +   S+     + +K W+L S N+FRKY GP+DI        WL I        LSA   RH    +   L+ +N++P  + +AM  H SQ+VW+R+LFVIFS YTY NTL
Sbjct:   28 SFKAAILDDGITPHKKNVLFVIAHPDDESMFFSPTINYLTTNAYNLHILCLSTGNADGMGSIRKDELHQACAVLRVPLRQLKILDHPNLQDGFGQVWSHDLLTEIIDEAVTNHDIHTIITFDNYGVSGHSNHRDVHHGVLKFLMINSE-----KNIKAWELVSFNIFRKYCGPVDI--------WLSI--------LSAK--RHPSKRHPSKLIIINEQPWKSLEAMAQHLSQWVWFRKLFVIFSSYTYTNTL 257          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923714788|ref|XP_013663523.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X1 [Brassica napus])

HSP 1 Score: 186.808 bits (473), Expect = 7.319e-54
Identity = 107/255 (41.96%), Postives = 145/255 (56.86%), Query Frame = 0
Query:   72 KGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            K + Q   L +G     + VL V++HPDDE+MFFSPTI++     ++  +LCLSTGN  G G +R  ELRQAC +L VP +QLTI+D   +QD     W    L  II + V  +D+  ++TFD+ GVSGH NH    R V   +   S+     R +K W+L S N+ RKY GP+DI        WL I        LSA   RH        +  +N++P+ +Y+AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   26 KSTSQATFLDDGKTHNKKNVLFVISHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKDELRQACAVLRVPLQQLTIVDHPNLQDGFGQVWSHDLLEEIISEEVTSHDIHTIITFDNYGVSGHCNH----RGVVKFLQTNSE-----RNIKAWELVSLNIIRKYCGPIDI--------WLSI--------LSAK--RHGSK-----VSIINEQPLKSYEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 248          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|1072950726|ref|XP_018486053.1| (PREDICTED: LOW QUALITY PROTEIN: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Raphanus sativus])

HSP 1 Score: 185.652 bits (470), Expect = 1.865e-53
Identity = 104/253 (41.11%), Postives = 144/253 (56.92%), Query Frame = 0
Query:   74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            S + A L +G     + VL V+AHPDDE+MFFSPTI++     ++  +LCLSTGN  G G +R  EL QAC +L VP +QL ++D   +QD     W    L  II   V  +D+  ++TFD+ GVSGH NH  + R V   +   S+     R +K W+L S N+FRK  GP+DI        WL I        LSA      L G+   ++  N++P+ +++AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   28 SSEAAVLDDGETHHKKNVLFVIAHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKEELHQACAVLRVPLQQLKMVDHPNLQDGFAQVWSHDLLTEIIGKEVNNHDIHTIITFDNYGVSGHCNHRDVHRGVVTFLQSNSE-----RNIKAWELVSLNIFRKXCGPIDI--------WLSI--------LSA-----KLHGSK--VIVTNEQPLKSFEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 252          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|922512330|ref|XP_013591872.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X2 [Brassica oleracea var. oleracea])

HSP 1 Score: 184.496 bits (467), Expect = 4.893e-53
Identity = 98/253 (38.74%), Postives = 142/253 (56.13%), Query Frame = 0
Query:   74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            S + A L +G     + VL V+AHPDDE+MFFSPTI++    G++  +LC STGN  G G +R  EL QAC +L VP  QL ++D   +QD     W    L  +I + V  +D+  ++TFD+ GVSGH NH  +   V   +   S+     R +K W+L S N+FRKY GP+DI          W+ +  ++++ S               + +N++P  +Y+AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   28 SSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASSGYNLHMLCFSTGNADGMGSIRKDELHQACAVLRVPLEQLKVLDHPNLQDGFGQVWSHDLLAKVIGEEVSNHDIHTIITFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDI----------WLSIFSSKRNPSKA-------------IIINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|685332880|ref|XP_009104118.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica rapa] >gi|685332883|ref|XP_009104120.1| PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica rapa])

HSP 1 Score: 184.496 bits (467), Expect = 5.275e-53
Identity = 99/253 (39.13%), Postives = 143/253 (56.52%), Query Frame = 0
Query:   74 SKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            S + A L +G     + VL V+AHPDDE+MFFSPTI++    G++  +LC STGN  G G +R  EL QAC +L VP +QL ++D   +QD     W    L  +I + V  +D+  +VTFD+ GVSGH NH  +   V   +   S+     R +K W+L S N+FRKY GP+DI          W+ +  ++++ S               + +N++P  +Y+AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   28 SSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASNGYNLHMLCFSTGNADGTGSIRKDELHQACAVLRVPLQQLKVLDHPDLQDGFGQVWSHDLLAKVIGEEVSNHDIHTIVTFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDI----------WLSIFSSKRNPSKA-------------IIINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923714792|ref|XP_013663524.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase isoform X2 [Brassica napus])

HSP 1 Score: 183.341 bits (464), Expect = 1.315e-52
Identity = 107/255 (41.96%), Postives = 145/255 (56.86%), Query Frame = 0
Query:   72 KGSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
            K + Q   L +G     + VL V++HPDDE+MFFSPTI++     ++  +LCLSTGN  G G +R  ELRQAC +L VP +QLTI+D   +QD     W    L  II + V  +D+  ++TFD+ GVSGH NH    R V   +   S+     R +K W+L S N+ RKY GP+DI        WL I        LSA   RH        +  +N++P+ +Y+AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   26 KSTSQATFLDDGNK---KNVLFVISHPDDESMFFSPTINYLTANAYNIHILCLSTGNADGMGSIRKDELRQACAVLRVPLQQLTIVDHPNLQDGFGQVWSHDLLEEIISEEVTSHDIHTIITFDNYGVSGHCNH----RGVVKFLQTNSE-----RNIKAWELVSLNIIRKYCGPIDI--------WLSI--------LSAK--RHGSK-----VSIINEQPLKSYEAMAQHLSQWVWFRKLFVSFSSYTYTNTL 245          
BLAST of EWM25411.1 vs. NCBI_GenBank
Match: gi|923663763|ref|XP_013648364.1| (PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase [Brassica napus])

HSP 1 Score: 182.956 bits (463), Expect = 2.399e-52
Identity = 101/254 (39.76%), Postives = 138/254 (54.33%), Query Frame = 0
Query:   73 GSKQPAKLKEGAHSLGQRVLLVVAHPDDETMFFSPTISHYRRLGWSTSLLCLSTGNFYGQGPVRSGELRQACRLLGVPARQLTIIDREAIQDSPTNAWPEASLCPIILDAVKRNDVQEVVTFDDSGVSGHPNHVALSRAVDFLVGPQSKEFVMPRGVKVWKLESTNMFRKYIGPLDILFCIATSMWLWIYVNCNRKDLSAGGWRHSLSGNNRFLLCLNDRPVLTYQAMMAHASQFVWYRRLFVIFSRYTYVNTL 326
             S + A L +G     + VL V+AHPDDE+MFFSPTI++    G++  +LC STGN  G G +R  EL QAC +L VP +QL ++D    QD     W    L  II + V  +D+  ++TFD+ GVSGH NH  +   V   +   S+     R +K W+L S N+FRKY GP+DI   I +S                   RH           +N++P  +Y+AM  H SQ+VW+R+LFV FS YTY NTL
Sbjct:   27 SSSKAAVLDDGN---KKNVLFVIAHPDDESMFFSPTINYLASNGYNLHVLCFSTGNADGMGSIRKDELHQACAVLRVPLQQLKVLDHPDFQDGFGQVWSHDLLAKIISEEVSNHDIHTIITFDNYGVSGHCNHRDVHHGVLKFLQTNSE-----RNIKAWELASLNIFRKYSGPIDIWLSIFSSK------------------RHPSKAT-----IINEQPWKSYKAMAQHLSQWVWFRKLFVSFSSYTYANTL 249          
The following BLAST results are available for this feature:
BLAST of EWM25411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107172|gb|EWM25411.1|0.000e+0100.00N-acetylglucosaminyl phosphatidylinositol deacetyl... [more]
gi|553196587|ref|XP_005856378.1|5.099e-113100.00N-acetylglucosaminylphosphatidylinositol deacetyla... [more]
gi|1130648255|ref|XP_010940401.2|7.247e-5642.06PREDICTED: LOW QUALITY PROTEIN: N-acetylglucosamin... [more]
gi|567205161|ref|XP_006408676.1|5.416e-5542.69hypothetical protein EUTSA_v10002077mg [Eutrema sa... [more]
gi|923714788|ref|XP_013663523.1|7.319e-5441.96PREDICTED: probable N-acetylglucosaminyl-phosphati... [more]
gi|1072950726|ref|XP_018486053.1|1.865e-5341.11PREDICTED: LOW QUALITY PROTEIN: probable N-acetylg... [more]
gi|922512330|ref|XP_013591872.1|4.893e-5338.74PREDICTED: probable N-acetylglucosaminyl-phosphati... [more]
gi|685332880|ref|XP_009104118.1|5.275e-5339.13PREDICTED: probable N-acetylglucosaminyl-phosphati... [more]
gi|923714792|ref|XP_013663524.1|1.315e-5241.96PREDICTED: probable N-acetylglucosaminyl-phosphati... [more]
gi|923663763|ref|XP_013648364.1|2.399e-5239.76PREDICTED: probable N-acetylglucosaminyl-phosphati... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5265rna5265Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications