EWM25354.1, cds5242 (CDS) Nannochloropsis gaditana

Overview
NameEWM25354.1
Unique Namecds5242
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:546923..547123 -
Alignment locationCM002465.1:546482..546649 -
Alignment locationCM002465.1:546258..546377 -
Alignment locationCM002465.1:546113..546175 -
Alignment locationCM002465.1:545931..546023 -
Alignment locationCM002465.1:545812..545864 -
Alignment locationCM002465.1:545626..545695 -
Alignment locationCM002465.1:545073..545100 -
Alignment locationCM002465.1:544415..544849 -
Alignment locationCM002465.1:544128..544273 -
Alignment locationCM002465.1:543731..543943 -
Alignment locationCM002465.1:543536..543640 -
Alignment locationCM002465.1:543091..543450 -
Alignment locationCM002465.1:542868..542948 -
Alignment locationCM002465.1:542656..542760 -
Alignment locationCM002465.1:542216..542476 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25354.1
Productlycopene beta cyclase
Orig transcript idgnl|cribi|Naga_100005g43.6648.mrna
GeneLCYB
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:546923..547123 -
CM002465.1supercontigCM002465.1:546482..546649 -
CM002465.1supercontigCM002465.1:546258..546377 -
CM002465.1supercontigCM002465.1:546113..546175 -
CM002465.1supercontigCM002465.1:545931..546023 -
CM002465.1supercontigCM002465.1:545812..545864 -
CM002465.1supercontigCM002465.1:545626..545695 -
CM002465.1supercontigCM002465.1:545073..545100 -
CM002465.1supercontigCM002465.1:544415..544849 -
CM002465.1supercontigCM002465.1:544128..544273 -
CM002465.1supercontigCM002465.1:543731..543943 -
CM002465.1supercontigCM002465.1:543536..543640 -
CM002465.1supercontigCM002465.1:543091..543450 -
CM002465.1supercontigCM002465.1:542868..542948 -
CM002465.1supercontigCM002465.1:542656..542760 -
CM002465.1supercontigCM002465.1:542216..542476 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0016117carotenoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: INTERPRO
TermDefinition
IPR010108Lycopene_cyclase_b/e
IPR008671Lycopene_cyclase_FAD-bd
IPR008532DUF814
Homology
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|585107115|gb|EWM25354.1| (lycopene beta cyclase [Nannochloropsis gaditana])

HSP 1 Score: 1739.55 bits (4504), Expect = 0.000e+0
Identity = 833/833 (100.00%), Postives = 833/833 (100.00%), Query Frame = 0
Query:    1 MDAQAEGRNSLAGPRASIDQYTYPSTSEWPLLWADHFIFYIYIYIHSNRKAILGFTGPALCFFSRAVKDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGQKLDDISSDLLHECSSLVKANSIEGCKMKEVKVVYTRWRNLKKTKSMEAGQIGFHDPSKVRTIKVQKCNSIVNALNKTKEERYPDLQAEQEARAVEYRAAQKASKRDQEKQEREEKKRREEEAKLRSYESLMNDGGMESNKKWGSTADVSAALLLKTFGLTDNQDMPRVPMWLHIICSFMFCGASMGWVARGLVSKHDKPSCLVNRNPTARKPKQLPLFPAPVVSESSQTHFLRSNAQFSAKETIECSNSAMKPIVCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEKLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGSLLRLDDGTRVRARFLLDCSGYQSRLVTLDGTHDPGVQIAYGIECEVDMCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKGGLPFIRSVTPLADLPSFFELEKTGMSDRSELMKFDSIS 833
            MDAQAEGRNSLAGPRASIDQYTYPSTSEWPLLWADHFIFYIYIYIHSNRKAILGFTGPALCFFSRAVKDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGQKLDDISSDLLHECSSLVKANSIEGCKMKEVKVVYTRWRNLKKTKSMEAGQIGFHDPSKVRTIKVQKCNSIVNALNKTKEERYPDLQAEQEARAVEYRAAQKASKRDQEKQEREEKKRREEEAKLRSYESLMNDGGMESNKKWGSTADVSAALLLKTFGLTDNQDMPRVPMWLHIICSFMFCGASMGWVARGLVSKHDKPSCLVNRNPTARKPKQLPLFPAPVVSESSQTHFLRSNAQFSAKETIECSNSAMKPIVCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEKLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGSLLRLDDGTRVRARFLLDCSGYQSRLVTLDGTHDPGVQIAYGIECEVDMCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKGGLPFIRSVTPLADLPSFFELEKTGMSDRSELMKFDSIS
Sbjct:    1 MDAQAEGRNSLAGPRASIDQYTYPSTSEWPLLWADHFIFYIYIYIHSNRKAILGFTGPALCFFSRAVKDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGQKLDDISSDLLHECSSLVKANSIEGCKMKEVKVVYTRWRNLKKTKSMEAGQIGFHDPSKVRTIKVQKCNSIVNALNKTKEERYPDLQAEQEARAVEYRAAQKASKRDQEKQEREEKKRREEEAKLRSYESLMNDGGMESNKKWGSTADVSAALLLKTFGLTDNQDMPRVPMWLHIICSFMFCGASMGWVARGLVSKHDKPSCLVNRNPTARKPKQLPLFPAPVVSESSQTHFLRSNAQFSAKETIECSNSAMKPIVCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEKLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGSLLRLDDGTRVRARFLLDCSGYQSRLVTLDGTHDPGVQIAYGIECEVDMCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKGGLPFIRSVTPLADLPSFFELEKTGMSDRSELMKFDSIS 833          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|299473610|emb|CBN78004.1| (Lycopene beta cyclase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 483.411 bits (1243), Expect = 5.136e-159
Identity = 243/458 (53.06%), Postives = 309/458 (67.47%), Query Frame = 0
Query:  357 KPIVCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEKLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGSLLRLDDGTRVRARFLLDCSGYQSRLVTLDGTHDPGVQIAYGIECEVD--MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAARE--PTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKK-ASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKG-GLPFIRSVTPLAD 808
            K +V D AIVG GPAG VMA LLA++H LKV ++DP L++RWIPNYGVWVEEWEAL+K L   L  CL +TW  TD F GGSHG P DER RI R Y RV R  ++  L++R    G   +   +DA+++ H  +G+ + LDDG ++  R L+DCSG+ S LV   G H+PGVQIAYG E EV     PY E+AM  MDYRTDY D      +     +  PTF+YAMPMG   +G++ ++FFEETSLVARPP+SFD CK+R+  RLKH G  V  V +EE CYIPMGGA+P  +QRVVAFGGA GLVHAATGY   R +AA+G  ++AIA ELKK      +AAAR  Y ++W    +LQRDF +FGGEFLMAQ A  LRGFF+ FF+LP  +W GFL+G+P LP+NE H+ W  R +FG+  +     +++  LA AG   G     I++VTPLA+
Sbjct:   32 KRVVYDAAIVGYGPAGGVMATLLAEKHGLKVCIIDPNLEKRWIPNYGVWVEEWEALDKDLQIGLGDCLDRTWEVTDSFFGGSHGTPADERCRIDRPYARVSRDKMQANLKSRLSAAGVTKIKGKVDAKTLEHSADGTSVCLDDGQQIDCRLLVDCSGHYSELVERVGEHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYADKAELSPEEVKGLDDTPTFLYAMPMGAAPNGQR-RIFFEETSLVARPPISFDLCKERLYRRLKHHGIEVTKVMDEELCYIPMGGAMPSLTQRVVAFGGASGLVHAATGYMHVRMLAASGAVSRAIAAELKKDGPGTSEAAARRAYQALWPSKAKLQRDFHVFGGEFLMAQPASTLRGFFNGFFKLPLPLWAGFLSGYPNLPHNELHQDWQSRFKFGLQFFFKLAPAVQFQLALAGALSGWQYGLIKAVTPLAE 488          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|873232035|emb|CEM06650.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 483.797 bits (1244), Expect = 2.327e-158
Identity = 236/460 (51.30%), Postives = 307/460 (66.74%), Query Frame = 0
Query:  362 DVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEKLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGSLLRLDDG--TRVRARFLLDCSGYQSRLVTLDGTHDPGVQIAYGIECEVDMCPYGEDAMTLMDYRTDYL-DNQAAEVQMT-----AAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKK---ASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKGGLPFIRSVTPLADLP 810
            DV IVG GPAG+ M A+LA+++ L+VVM+DP++ +RW  NYGVWV EWEA+E+ L   +  CL   W  TDLF       P    LRI R Y RV+R  L+  LR  A   G ++L  A+D  SV HD+ GS +RL DG  T +R + ++DC+G++S+L+  DG HDPG QIAYGI CE +  P+ E AM  MDYRTDY+ + Q  E  M      A REPTF+Y MP G +  G + ++F EETSLVARPPMSFDECK+R + RL +LG     +EEEEFCYIPMGGAIP R+QRV+AFGGA G+VHAATGY ICR M+   PTA+AIA E+++     + PD AAR  Y ++W    R QR+F +FGGEFLM Q+  NLR FF  FF L   MW GFLAGWPGLP+N+QHETW +R+ F +S +     +++ AL  + V  GG+  +R++TP   +P
Sbjct:   89 DVLIVGAGPAGTAMGAVLAKRYGLRVVMIDPRIHERWPNNYGVWVAEWEAVERQLQLGVDECLDHRWEKTDLFLDPGGTTP----LRIHRPYARVNRIKLQQRLRAHAQQAGVVMLDTAIDPSSVRHDDTGSSVRLQDGRSTELRTKLIVDCTGHESKLIERDGRHDPGFQIAYGIMCECERHPFDEGAMLFMDYRTDYITEAQKGEPTMQTDLDKAVREPTFLYVMPFGESASGLR-RIFLEETSLVARPPMSFDECKERFKKRLAYLGVEPQKIEEEEFCYIPMGGAIPKRNQRVIAFGGAAGVVHAATGYMICRMMSGVAPTAEAIAKEIRQPIDGVFAPDRAARTAYAALWPAQFRRQREFTVFGGEFLMQQNVHNLRAFFRGFFNLELPMWAGFLAGWPGLPHNDQHETWTRRIAFSLSFFTKLNNAVRAALVKSAVFGGGVDLLRALTPDGVVP 543          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|223996393|ref|XP_002287870.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976986|gb|EED95313.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 417.157 bits (1071), Expect = 1.649e-132
Identity = 223/492 (45.33%), Postives = 307/492 (62.40%), Query Frame = 0
Query:  352 SNSAMKPI---VCDVAIVGGGPAGSVMAALLAQQHELK---VVMMDPKLDQRWIPNYGVWVEEWEALEKLL-GFSL---RSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGAILLAKALDAESVVHDEEGS--LLRLDDG--TRVRARFLLDCSGYQSRLVTLDG---THDPGVQIAYGIECEVD--------MC-PYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKG---GLPFIRSVTPLADLPSFFE 814
            SN  + P     CDV ++G GPA   +A LL+ +   K   V++ D   D+RW PNYGVW +EW+++ KL   F+       + + W +TD F GGS  I  ++R+R+ R Y R++R  L+  L   +      + + +    S+VHDE G+  L++  DG  ++VRA+ ++DC+G++S++V  D    +  PG QIAYGI  EVD         C PY ++AMTL DYRTD+    + E+   A + PTFMYAMP+   R      +FFEETSLVARP +SF ECK R   RL+HLG TV  VEEEEFCYIPMGG +P + QRV+ FGGA  +VH +TGY +CR+M  AG  AK I +EL++ ++NPD AA   Y+++W+ TT  QR+F +FGGEFLM Q+   LRGFFD FF+LP  +W GFLAGWPGLPNNE HETW  RL FG++     P+S+ + +  +  T     G+P  +SVTPL  LP  +E
Sbjct:   76 SNPTLTPTSQDTCDVLVLGSGPAARSIATLLSSKANDKAYDVLLADSNYDRRWAPNYGVWQDEWQSICKLYESFNQPIGNEVIDRLWMSTDCFFGGSFDIAAEQRMRLDRPYCRIERDVLRRVLSPASECTSVNIYSPS---GSMVHDESGTSVLIQSKDGDISQVRAKLVVDCTGHESKIVLKDDRMKSIPPGFQIAYGILAEVDETSIPNNDFCGPYFKEAMTLFDYRTDHFPEGSNELA-KAEKAPTFMYAMPLNGNR------IFFEETSLVARPALSFQECKDRCMTRLEHLGITVTKVEEEEFCYIPMGGPLPAKDQRVIGFGGAAAMVHPSTGYHLCRAMMGAGEVAKVIREELEEKNWNPDRAAARAYNAIWSPTTIAQRNFAVFGGEFLMKQNVVGLRGFFDGFFKLPLGLWGGFLAGWPGLPNNENHETWWARLVFGLTFVSKLPVSVAVDMLGSIATYSISEGVPLPQSVTPLLGLPDGYE 557          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|397601116|gb|EJK57822.1| (hypothetical protein THAOC_22103 [Thalassiosira oceanica])

HSP 1 Score: 404.445 bits (1038), Expect = 1.984e-127
Identity = 223/502 (44.42%), Postives = 305/502 (60.76%), Query Frame = 0
Query:  361 CDVAIVGGGPAGSVMAALLAQQHE-----LKVVMMDPKLDQRWIPNYGVWVEEWEALEKL---LGFSL-RSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNEL----------------RTRALDGGAILLAKALD----AESVVHDEEGS--LLRLDDG--TRVRARFLLDCSGYQSRLVTLDG---THDPGVQIAYGIECEVDMC---------PYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAP--LSLKLALAAAGVT-KGGLPFIRSVTPLADLPSFFE 814
            CDV ++G GPA   ++ LLA           V++ D   D+RW+PNYGVW +EWE++ ++    G  L  +C+ + W  TD F GGS  IPVD R+R+ R Y RVDR +L+  L                R R +    I  A A++    A S+ HDE GS  +L+  DG   +VRA+ ++DC+G++S++V  D    ++ PG QIAYG+  ++D           PY ++AMTL DYRTD+  + + E+   A   PTF Y MP+   R      VFFEETSLVARP +SF+ECK+R   RL+HLG TV  +EEEEFCYIPMGG +P + QRVV +GG+  +VH +TGY +CR+M  AG  A+ I DEL    +NPD AA   YD++W+ +   QR+F +FGGEFLM Q  + LRGFFD FF+LP  MW GFLAGWPGLPNN++HETW  RL FG++     P  ++L + L+  G +   G+   +SVTPL  LP  +E
Sbjct:   81 CDVLVLGSGPAARAISTLLASSTSNGSGGFDVLVADANFDRRWVPNYGVWQDEWESVREVYASFGQPLGDACIDRLWSVTDCFFGGSFDIPVDYRMRLDRPYCRVDRDSLRRTLSPESEVDVLNEGEGAARYRVVRANHISKATAVNVYSPAGSLSHDESGSTVMLQAKDGETIQVRAKVVVDCTGHESKIVLKDDRVKSNPPGFQIAYGVLAKLDESSIPDTNFAGPYSKEAMTLFDYRTDHFPDGSNEL-YKAETAPTFNYVMPLDSNR------VFFEETSLVARPAVSFEECKERCMTRLEHLGITVSEIEEEEFCYIPMGGPLPAKDQRVVGYGGSSAMVHPSTGYHLCRAMMGAGSVARVIRDELSSPDFNPDRAAARAYDAIWSPSNIGQRNFAVFGGEFLMKQKVEGLRGFFDGFFKLPLEMWAGFLAGWPGLPNNDKHETWSARLLFGLTFVSKLPPAVALDMFLSIIGYSISEGVALPQSVTPLLGLPDGYE 575          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|1072228454|gb|OEU13190.1| (lycopene beta cyclase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 399.053 bits (1024), Expect = 2.195e-125
Identity = 215/489 (43.97%), Postives = 294/489 (60.12%), Query Frame = 0
Query:  361 CDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWE-ALEKLLGFSLR-------SCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRT--RALDGGAILLAKALD----AESVVHDEEGSLLRLD----DGTRV--RARFLLDCSGYQSRLVTLDGTH---DPGVQIAYGIECEVD---------MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLK----LALAAAGVTKGGLPFIRSVTP-LADLPSF 812
            CDV I+GGGPAG  +A+LL    +L VV+ +   D+ W+PNYGVW +EW+  L+K   F +          + + W  TD + GGS  IP ++R+R+ R Y R+DR ALK  L    R ++   +  A  ++    A +++HDE+G+ ++L     D + V  R + ++D +G++++LV  D       PG QIAYG    VD         + PY +DAMTL DYRTD+ D   +E  + A + PTFMYAMP+G  R      VFFEETSLVARP +SF ECK R   RLKH G  V  +EEEEFCYIPMGGA+P R QR++  GGA  +VH +TGY ICR +  A   AK I +EL     N D A  + YD++W+     QR+F  FGGEFLM Q+   LRGFFD FF+LP  +W GFLAGWPGL  NE HE+W+KR+ FG++  +  PL +     L++ +  +T+     I+SVTP L D PS+
Sbjct:   75 CDVLILGGGPAGCAIASLLGSNGKLDVVVANKDFDKDWVPNYGVWKDEWQTVLDKYKSFGIELDGGEFGRSVDREWDVTDCYFGGSFDIPTEKRMRLDRPYCRIDRFALKKSLTKNFRVVEANHMSNAIGINMYRPAGTLIHDEDGTTIQLQPKDADSSPVTMRTKIVIDTTGHETKLVMKDNIEPYTQPGFQIAYGASVVVDETESTNLSKIGPYEKDAMTLFDYRTDHFDGNESET-IKANKAPTFMYAMPLGGNR------VFFEETSLVARPAVSFQECKDRCFKRLKHHGIVVTKIEEEEFCYIPMGGALPARDQRILGLGGAATMVHPSTGYHICRCLMGASSVAKVIQEELALEQPNIDRAVASSYDALWSPGNIRQRNFATFGGEFLMKQNVVGLRGFFDGFFKLPLELWGGFLAGWPGLAYNENHESWEKRIWFGLNFIVKLPLPVAADMFLSIVSYSLTE-NFSLIQSVTPLLGDPPSY 555          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|219109716|ref|XP_002176612.1| (precursor of cyclase lycopene beta cyclase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411147|gb|EEC51075.1| precursor of cyclase lycopene beta cyclase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 399.823 bits (1026), Expect = 5.149e-125
Identity = 220/536 (41.04%), Postives = 321/536 (59.89%), Query Frame = 0
Query:  321 PLFPAPVVSESSQTHFLRSNAQFSAKETIECSNSAMKPIVCDVAIVGGGPAGSVMAALLA--QQHELKVVMMDPKLDQRWIPNYGVWVEEWEALEK--------LLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALD-GGAILLAKALD------AESVVHDEEGSLLRL----DDGTRVRARFLLDCSGYQSRLV---TLDGTHDPGVQIAYGIECEVD---------MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADEL--KKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLK---LALAAAGVTKGGLPFIRSVTPLADLPSFFELEKT 818
            P+ P  +VS S  T F  S++  ++       ++ +   VCDV ++G GPA   +A+LL+  QQ  +KV++ D  +D+ W  NYGVW +EW+++           +G ++ + + + W  TD + GGS  IP++E++R+ R Y RVD+ AL++ L         A  ++KA+       A S++HDE+G+ ++L    D    VR++ ++DC+G++++LV   T   +  PG QIAYG   +VD           PY ++AMTL DYRTD+   +  E ++ A R PTFMYAMP+      K  +VFFEETSLVARP MSF ECK R   RL++LG  V  V EEEFCYIPMGGA+P + QRV+A GG+  +VH +TGY ICR +  A   A AI  E+    A+ N D  A + YD++W+    +QR+F +FGGEFLM Q+   LRGFFD FFRLP+ +W GFLAGWPGLPNN++HE+W  RL +G++  +  P  +    LA  A  +   G+P  +SVTP    P  +E ++ 
Sbjct:   54 PISPRTIVSSSPLTLFATSSSGIASASV----DTTIVDEVCDVLVLGSGPAARAIASLLSAPQQGAMKVILADQNVDKVWPANYGVWQDEWQSVVDRFQAAGVPFVGGNVDNAIDRAWNVTDCYFGGSFDIPMEEQMRVNRPYYRVDKYALRDSLTGNEYKIVKANHISKAIGPNLYSPAGSLMHDEDGTTIQLRTKDDQFLTVRSKLVVDCTGHETKLVLRETRPESQPPGFQIAYGCLVDVDESNSPDLSRFGPYDKEAMTLFDYRTDHFLTE--EEKIKADRAPTFMYAMPI------KDNQVFFEETSLVARPAMSFQECKDRCFRRLEYLGIRVTKVHEEEFCYIPMGGALPAKDQRVLAIGGSAAMVHPSTGYHICRCLMGATDMAAAIQKEMSYSPAAPNLDRVAASAYDALWSPENIMQRNFAVFGGEFLMKQNVVGLRGFFDGFFRLPTELWGGFLAGWPGLPNNDKHESWIARLWYGMNFIVRIPPLVAVDMLASIATYMVTEGVPLPQSVTPFFGKPESYEYKRN 577          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|1072234482|gb|OEU19212.1| (lycopene beta cyclase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 391.349 bits (1004), Expect = 2.334e-122
Identity = 212/487 (43.53%), Postives = 291/487 (59.75%), Query Frame = 0
Query:  363 VAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALE--------KLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRT--RALDGGAILLAKALD----AESVVHDEEGSLLRLD----DGTRV--RARFLLDCSGYQSRLVTLDGTH---DPGVQIAYGIECEVD---------MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADELKKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLK----LALAAAGVTKGGLPFIRSVTP-LADLPSF 812
            V I+GGGPAG  +A+LL    +L VV+ +   D+ W+PNYGVW +EW+ +         +L G      + + W  TD + GGS  IP ++R+R+ R Y RVDR ALK  L    R ++   +  A  ++    A +++HDE+G+ ++L     D + +  R + ++D +G++++LV  D       PG QIAYG    VD         + PY +DAMTL DYRTD+ D   +E  + A + PTFMYAMP+G  R      VFFEETSLVARP +SF ECK R   RLKH G  V  +EEEEFCYIPMGGA+P R QR++  GGA  +VH +TGY ICR +  A   AK I +EL     N D A  + YD++W+     QR+F  FGGEFLM Q+   LRGFFD FF+LP  +W GFLAGWPGL  NE HE+W+KR+ FG++  +  PL +     L++ +  +T+     I+SVTP L D PS+
Sbjct:   79 VLILGGGPAGCAIASLLGSNGKLDVVVANKDFDKDWVPNYGVWKDEWQTVLDEYKSFGIELDGGEFGRSVDREWDVTDCYFGGSFDIPTEKRMRLDRPYCRVDRFALKKSLTKNFRVVEANHMSNAIGINVYSPAGTLIHDEDGTTIQLQPKDADSSPITMRTKIVIDTTGHETKLVMKDNIEPYTQPGFQIAYGASVVVDETESTNLSKIGPYEKDAMTLFDYRTDHFDGNESET-IKANKAPTFMYAMPLGGNR------VFFEETSLVARPAVSFQECKDRCFKRLKHHGIVVTKIEEEEFCYIPMGGALPARDQRILGLGGAATMVHPSTGYHICRCLMGASSVAKVIQEELALEQPNIDRAVASSYDALWSPGNIRQRNFATFGGEFLMKQNVVGLRGFFDGFFKLPLELWGGFLAGWPGLAYNENHESWEKRIWFGLNFIVKLPLPVAADMFLSIVSYSLTE-NFSLIQSVTPLLGDPPSY 557          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|1210519428|dbj|GAX21707.1| (lycopene beta-cyclase [Fistulifera solaris])

HSP 1 Score: 374.785 bits (961), Expect = 4.598e-115
Identity = 206/501 (41.12%), Postives = 295/501 (58.88%), Query Frame = 0
Query:  360 VCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALE--------KLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRTRALDGGA---ILLAKALD----------AESVVHDEEGSLLRLD----DGTRVRARFLLDCSGYQSRLVTLD----GTHDPGVQIAYGIECEVD---------MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADEL-KKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKG---GLPFIRSVTPLADLPSFFELEKT 818
             CD+ ++G GPA   +A+LLA   +L V++ D  +D+ ++PNYGVW +EW+A+          L G  + S + + W  TD + GGS  IPV ERLRI R Y R+DR AL+  L   + +G A   ++ AK +           A +++HD +G+ ++L+    +   VR + ++DC+G++++LV  +        PG QIAYG   +VD         + PY ++AMTL DYRTD+  +   E ++ AA  PTFMYAMP+          +FFEETSLVARP +SF ECK R   RLK+    V  V EEEFCYIPMGGA+P + QR++  GG+  +VH +TGY +CR + AA   A+ I +EL + A  N D AA A Y ++W+     QR+F +FGGEFLM Q    LRGFFD FFRLP  +W GFLAGWPGLPNN++HE+W  RL +G++  +  P  +   +  + +T      L  ++SVTP    P  +E +K 
Sbjct:   41 TCDILVLGSGPAARAIASLLAVSDDLDVLLTDTNIDKEFVPNYGVWQDEWQAVVDRYAAAGVSLDGKEVPSSVNRLWKTTDCYFGGSFDIPVTERLRIDRPYCRIDRMALREALSPDSGNGNAPYRMMAAKHISEAFQINLYQPAGTLIHDADGTTIQLETLEQERLTVRTKLVIDCTGHETKLVLREPRGGNQAPPGFQIAYGALVQVDETESPDLTQIGPYDKEAMTLFDYRTDHYVDPEDEAKVGAA--PTFMYAMPL------YDNLIFFEETSLVARPAVSFQECKDRCIERLKYHRIKVTEVYEEEFCYIPMGGALPAKDQRIIGLGGSAVMVHPSTGYHLCRVLMAAADVAEVIRNELVETAQPNLDRAAAAAYHAMWSPENMRQRNFAVFGGEFLMKQDVVGLRGFFDGFFRLPLPLWAGFLAGWPGLPNNDKHESWWARLWYGLNFIVRIPGPVAADMVYSILTYSIFRNLSLMQSVTPFLGAPESYEYKKN 533          
BLAST of EWM25354.1 vs. NCBI_GenBank
Match: gi|1210531197|dbj|GAX10298.1| (lycopene beta-cyclase [Fistulifera solaris])

HSP 1 Score: 374.015 bits (959), Expect = 1.277e-114
Identity = 210/502 (41.83%), Postives = 295/502 (58.76%), Query Frame = 0
Query:  360 VCDVAIVGGGPAGSVMAALLAQQHELKVVMMDPKLDQRWIPNYGVWVEEWEALE--------KLLGFSLRSCLMKTWPNTDLFCGGSHGIPVDERLRIKRAYGRVDRTALKNELRT-RALDGGAIL-------LAKALD------AESVVHDEEGSLLRLD----DGTRVRARFLLDCSGYQSRLVTLD---GTH-DPGVQIAYGIECEVD---------MCPYGEDAMTLMDYRTDYLDNQAAEVQMTAAREPTFMYAMPMGPTRDGKKTKVFFEETSLVARPPMSFDECKKRMELRLKHLGATVLNVEEEEFCYIPMGGAIPVRSQRVVAFGGAMGLVHAATGYQICRSMAAAGPTAKAIADEL-KKASYNPDAAARAVYDSVWTRTTRLQRDFVIFGGEFLMAQHADNLRGFFDSFFRLPSLMWTGFLAGWPGLPNNEQHETWDKRLEFGISLWLLAPLSLKLALAAAGVTKG---GLPFIRSVTPLADLPSFFELEKT 818
             CD+ ++G GPA   +A+LLA   +L V++ D  +D+ ++PNYGVW +EW+A+          L G  + S + + W  TD + GGS  IPV ERLRI R Y R+DR AL+  L    A +G A         +++A        A ++VHD  G+ ++L+    +   VR + ++DC+G++++LV  +   G H  PG QIAYG   +VD         + PY ++AMTL DYRTD+  +   E ++ AA  PTFMYAMP+          +FFEETSLVARP +SF ECK R   RLK+    V  V EEEFCYIPMGGA+P + QR++  GG+  +VH +TGY +CR M AA   A+ I +EL + A  N D AA A Y ++W+     QR+F +FGGEFLM Q    LRGFFD FFRLP  +W GFLAGWPGLPNN++HE+W  RL +G++  +  P  +   +  + +T      L  ++SVTP    P  +E +K 
Sbjct:   50 TCDILVLGSGPAARAIASLLAVSDDLDVLLTDTNIDKEFVPNYGVWQDEWQAVVDRYAAAGVSLDGNDVPSSINRLWKTTDCYFGGSFEIPVAERLRINRPYCRIDRLALREALTPGLATNGNAPYRWMAARHISEAFQINLYQPAGTLVHDANGTTIQLETLEQERLTVRTKLIIDCTGHETKLVLREPRGGNHAPPGFQIAYGALVQVDETESTDLTQIGPYDKEAMTLFDYRTDHYVDPEDEAKVGAA--PTFMYAMPL------YDNLIFFEETSLVARPAVSFQECKDRCIERLKYHRIKVTEVYEEEFCYIPMGGALPAKDQRIIGLGGSAVMVHPSTGYHLCRVMMAAADVAEVIRNELVETAQPNLDRAAAAAYHAIWSPENIRQRNFAVFGGEFLMKQDVVGLRGFFDGFFRLPLPLWAGFLAGWPGLPNNDKHESWWARLWYGLNFIVRIPGPVAADMVYSILTYSLFRNLSLMQSVTPFLGAPESYEYKKN 543          
The following BLAST results are available for this feature:
BLAST of EWM25354.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107115|gb|EWM25354.1|0.000e+0100.00lycopene beta cyclase [Nannochloropsis gaditana][more]
gi|299473610|emb|CBN78004.1|5.136e-15953.06Lycopene beta cyclase, chloroplast precursor [Ecto... [more]
gi|873232035|emb|CEM06650.1|2.327e-15851.30unnamed protein product [Vitrella brassicaformis C... [more]
gi|223996393|ref|XP_002287870.1|1.649e-13245.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397601116|gb|EJK57822.1|1.984e-12744.42hypothetical protein THAOC_22103 [Thalassiosira oc... [more]
gi|1072228454|gb|OEU13190.1|2.195e-12543.97lycopene beta cyclase [Fragilariopsis cylindrus CC... [more]
gi|219109716|ref|XP_002176612.1|5.149e-12541.04precursor of cyclase lycopene beta cyclase [Phaeod... [more]
gi|1072234482|gb|OEU19212.1|2.334e-12243.53lycopene beta cyclase [Fragilariopsis cylindrus CC... [more]
gi|1210519428|dbj|GAX21707.1|4.598e-11541.12lycopene beta-cyclase [Fistulifera solaris][more]
gi|1210531197|dbj|GAX10298.1|1.277e-11441.83lycopene beta-cyclase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5255rna5255Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications