EWM25490.1, cds5189 (CDS) Nannochloropsis gaditana

Overview
NameEWM25490.1
Unique Namecds5189
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:404760..406079 +
Alignment locationCM002465.1:406464..406785 +
Alignment locationCM002465.1:406926..407080 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25490.1
Productmyb-related transcription factor
Orig transcript idgnl|cribi|Naga_100236g8.4066.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:404760..406079 +
CM002465.1supercontigCM002465.1:406464..406785 +
CM002465.1supercontigCM002465.1:406926..407080 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|585107255|gb|EWM25490.1| (myb-related transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 1232.24 bits (3187), Expect = 0.000e+0
Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 0
Query:    1 MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP 598
            MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP
Sbjct:    1 MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP 598          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|553186077|ref|XP_005854356.1| (myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|553190431|ref|XP_005855191.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293873|gb|EKU21173.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294704|gb|EKU22004.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 188.348 bits (477), Expect = 2.799e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query:   66 TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA 153
            TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA
Sbjct:    1 TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA 88          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|669145176|ref|XP_008608150.1| (hypothetical protein SDRG_04263 [Saprolegnia diclina VS20] >gi|530740316|gb|EQC38558.1| hypothetical protein SDRG_04263 [Saprolegnia diclina VS20])

HSP 1 Score: 173.711 bits (439), Expect = 4.959e-44
Identity = 78/139 (56.12%), Postives = 101/139 (72.66%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGP 176
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K AP      P   TG+ P
Sbjct:   17 SAYERRAWTRKEDESIIRLVDEYGTKRWSVISDHLNNENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKTAP-----PPPALTGMHP 150          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|698791896|ref|XP_009828980.1| (hypothetical protein H257_05719 [Aphanomyces astaci] >gi|574115637|gb|ETV81122.1| hypothetical protein H257_05719 [Aphanomyces astaci])

HSP 1 Score: 173.711 bits (439), Expect = 1.209e-43
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 0
Query:   23 QTPTHHQDSFEDDISSK-------LNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAK--ACG 167
             TPT++     DD+ SK         RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K  P +   +CG
Sbjct:    5 MTPTNN-----DDLDSKRGVGGTAYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNNENYGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKTTPTSMNGSCG 153          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|566027907|gb|ETI50818.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 169.859 bits (429), Expect = 1.410e-43
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K    VA++  G   A   GP   P  + E    +   G++G SS+ A
Sbjct:   16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|675188671|ref|XP_008903220.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567965246|gb|ETK90719.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567993963|gb|ETL44129.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568023239|gb|ETL97301.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568053629|gb|ETM50451.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096672|gb|ETN11419.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570331621|gb|ETO79569.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570955421|gb|ETP20580.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 170.244 bits (430), Expect = 2.845e-43
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K    VA++  G   A   GP   P  + E    +   G++G SS+ A
Sbjct:   69 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 236          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|813156276|ref|XP_012201487.1| (hypothetical protein SPRG_07305 [Saprolegnia parasitica CBS 223.65] >gi|641533702|gb|KDO27675.1| hypothetical protein SPRG_07305 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 171.4 bits (433), Expect = 2.977e-43
Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVA 163
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K AP A
Sbjct:   16 SAYERRAWTRKEDESIIRLVDEYGTKRWSVISDHLNNENYGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKAAPPA 141          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|1173946506|gb|OQR95030.1| (myb-like DNA-binding protein [Thraustotheca clavata])

HSP 1 Score: 170.629 bits (431), Expect = 5.121e-43
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 0
Query:   42 RRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVR 181
            RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK       V K  GP   T    P  VR
Sbjct:   21 RRAWTRKEDESIIRLVEEYGTKRWSVISDHLNSENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ------VNKTTGPPQPTLNNNPRLVR 154          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|566027906|gb|ETI50817.1| (hypothetical protein F443_05707 [Phytophthora parasitica P1569])

HSP 1 Score: 169.859 bits (429), Expect = 6.949e-43
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K    VA++  G   A   GP   P  + E    +   G++G SS+ A
Sbjct:   16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183          
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|970629828|gb|KUF76950.1| (Transcriptional activator Myb [Phytophthora nicotianae])

HSP 1 Score: 169.474 bits (428), Expect = 7.494e-43
Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query:   38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
            S   RR W+ +ED  I++LV  +GTK W+VI+  L  +  G  R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK   K    VA++  G   A   GP   P  + E    +   G++G SS+ A
Sbjct:   16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183          
The following BLAST results are available for this feature:
BLAST of EWM25490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107255|gb|EWM25490.1|0.000e+0100.00myb-related transcription factor [Nannochloropsis ... [more]
gi|553186077|ref|XP_005854356.1|2.799e-54100.00myb-like dna-binding protein, partial [Nannochloro... [more]
gi|669145176|ref|XP_008608150.1|4.959e-4456.12hypothetical protein SDRG_04263 [Saprolegnia dicli... [more]
gi|698791896|ref|XP_009828980.1|1.209e-4352.60hypothetical protein H257_05719 [Aphanomyces astac... [more]
gi|566027907|gb|ETI50818.1|1.410e-4351.19hypothetical protein, variant [Phytophthora parasi... [more]
gi|675188671|ref|XP_008903220.1|2.845e-4351.19hypothetical protein, variant [Phytophthora parasi... [more]
gi|813156276|ref|XP_012201487.1|2.977e-4359.52hypothetical protein SPRG_07305 [Saprolegnia paras... [more]
gi|1173946506|gb|OQR95030.1|5.121e-4355.71myb-like DNA-binding protein [Thraustotheca clavat... [more]
gi|566027906|gb|ETI50817.1|6.949e-4351.19hypothetical protein F443_05707 [Phytophthora para... [more]
gi|970629828|gb|KUF76950.1|7.494e-4351.19Transcriptional activator Myb [Phytophthora nicoti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5201rna5201Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications