EWM25490.1, cds5189 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|585107255|gb|EWM25490.1| (myb-related transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 1232.24 bits (3187), Expect = 0.000e+0 Identity = 598/598 (100.00%), Postives = 598/598 (100.00%), Query Frame = 0
Query: 1 MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP 598
MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP
Sbjct: 1 MSPTRTALPAGGISGQGMKTIQQTPTHHQDSFEDDISSKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVRESSTRTGKKGASSSVATAAGAYDTPASLQVQDKCVHENGQSKSTKRVRTGVGEKGKRGAQSTKNKAEVVTDDAAQFFITAGFSPYGQNTGFGSGLPAGAPAGAGMGGYYAVESPAGPPSSSTVGQSLHMHRLAEMLNGDNATGDLALASPMSSNRAGLLGPVDDNSFFAEQLQRQMSSNHQPQQENHLQLYLQQQLDEQWQQHFQQKLDQQLQLQEEQGQRYQQRRQQAEQTEAQYHRDIPPPFSGGADQGFLPFVPVPKKRRSLSPSGFSTAGPSLSSGASHLGLQVDAGVTATASSGRFNTDDLSPYCHYRPSSSLAANSSYLESFLEGSLTPQYHQSTRDPVHNPAPFLAPLPPHPTQDDPSQGLAPDGPRRRDADCLALYILAAVPPLGGTSLLSLWTMLQAPPYCVLSSCIP 598
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|553186077|ref|XP_005854356.1| (myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|553190431|ref|XP_005855191.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293873|gb|EKU21173.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294704|gb|EKU22004.1| myb-like dna-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 188.348 bits (477), Expect = 2.799e-54 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 66 TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA 153
TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA
Sbjct: 1 TVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLA 88
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|669145176|ref|XP_008608150.1| (hypothetical protein SDRG_04263 [Saprolegnia diclina VS20] >gi|530740316|gb|EQC38558.1| hypothetical protein SDRG_04263 [Saprolegnia diclina VS20]) HSP 1 Score: 173.711 bits (439), Expect = 4.959e-44 Identity = 78/139 (56.12%), Postives = 101/139 (72.66%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGP 176
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K AP P TG+ P
Sbjct: 17 SAYERRAWTRKEDESIIRLVDEYGTKRWSVISDHLNNENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKTAP-----PPPALTGMHP 150
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|698791896|ref|XP_009828980.1| (hypothetical protein H257_05719 [Aphanomyces astaci] >gi|574115637|gb|ETV81122.1| hypothetical protein H257_05719 [Aphanomyces astaci]) HSP 1 Score: 173.711 bits (439), Expect = 1.209e-43 Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 23 QTPTHHQDSFEDDISSK-------LNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAK--ACG 167
TPT++ DD+ SK RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K P + +CG
Sbjct: 5 MTPTNN-----DDLDSKRGVGGTAYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNNENYGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKTTPTSMNGSCG 153
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|566027907|gb|ETI50818.1| (hypothetical protein, variant [Phytophthora parasitica P1569]) HSP 1 Score: 169.859 bits (429), Expect = 1.410e-43 Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K VA++ G A GP P + E + G++G SS+ A
Sbjct: 16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|675188671|ref|XP_008903220.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567965246|gb|ETK90719.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567993963|gb|ETL44129.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568023239|gb|ETL97301.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568053629|gb|ETM50451.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096672|gb|ETN11419.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570331621|gb|ETO79569.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570955421|gb|ETP20580.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 170.244 bits (430), Expect = 2.845e-43 Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K VA++ G A GP P + E + G++G SS+ A
Sbjct: 69 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 236
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|813156276|ref|XP_012201487.1| (hypothetical protein SPRG_07305 [Saprolegnia parasitica CBS 223.65] >gi|641533702|gb|KDO27675.1| hypothetical protein SPRG_07305 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 171.4 bits (433), Expect = 2.977e-43 Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVA 163
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K AP A
Sbjct: 16 SAYERRAWTRKEDESIIRLVDEYGTKRWSVISDHLNNENYGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQVNKAAPPA 141
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|1173946506|gb|OQR95030.1| (myb-like DNA-binding protein [Thraustotheca clavata]) HSP 1 Score: 170.629 bits (431), Expect = 5.121e-43 Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 0
Query: 42 RRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKDAPVAKACGPAGATGLGPPAGVR 181
RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWT +EE+I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK V K GP T P VR
Sbjct: 21 RRAWTRKEDESIIRLVEEYGTKRWSVISDHLNSENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDAQNRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRIAKQ------VNKTTGPPQPTLNNNPRLVR 154
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|566027906|gb|ETI50817.1| (hypothetical protein F443_05707 [Phytophthora parasitica P1569]) HSP 1 Score: 169.859 bits (429), Expect = 6.949e-43 Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K VA++ G A GP P + E + G++G SS+ A
Sbjct: 16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183
BLAST of EWM25490.1 vs. NCBI_GenBank
Match: gi|970629828|gb|KUF76950.1| (Transcriptional activator Myb [Phytophthora nicotianae]) HSP 1 Score: 169.474 bits (428), Expect = 7.494e-43 Identity = 86/168 (51.19%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 38 SKLNRRGWSTEEDACILKLVRAHGTKNWTVIAQGLAEKLGGPGRSGKQCRTRWLNHLNPDIKKAPWTAQEEAIVQDAQQRLGNRWAIIAKLLPGRTDNSIKNYYYSTMRKNMRRLAKSHGKD-APVAKA-CGPAGATGLGP---PAGVRE---SSTRTGKKGASSSVA 197
S RR W+ +ED I++LV +GTK W+VI+ L + G R+GKQCRTRWLNHL+P IKK PWTA+EE I++DAQ RLGN+WA I+KLLPGRTDN+IKN++YS+MR+ MRR+AK K VA++ G A GP P + E + G++G SS+ A
Sbjct: 16 STYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQVARSGVGSNKAAKFGPNSSPGSMVELARDAMNAGRQGMSSTQA 183 The following BLAST results are available for this feature:
BLAST of EWM25490.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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