EWM25521.1, cds5171 (CDS) Nannochloropsis gaditana

Overview
NameEWM25521.1
Unique Namecds5171
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:358429..358494 +
Alignment locationCM002465.1:358934..359791 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25521.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100032g38.264.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:358429..358494 +
CM002465.1supercontigCM002465.1:358934..359791 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0051726regulation of cell cycle
Vocabulary: INTERPRO
TermDefinition
IPR026907CCNDBP1
Homology
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|585107287|gb|EWM25521.1| (hypothetical protein Naga_100032g38 [Nannochloropsis gaditana])

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0
Query:    1 MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAMEGGGRERRREGNTQEKVVGWGS 307
            MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAMEGGGRERRREGNTQEKVVGWGS
Sbjct:    1 MATASFPLVTLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAMEGGGRERRREGNTQEKVVGWGS 307          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|672162177|ref|XP_008800922.1| (PREDICTED: uncharacterized protein LOC103715161 [Phoenix dactylifera])

HSP 1 Score: 80.1073 bits (196), Expect = 1.973e-13
Identity = 65/224 (29.02%), Postives = 102/224 (45.54%), Query Frame = 0
Query:   10 TLEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRH-IASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDD---AGTESEEEDDEEEEGEEGGL 229
             LE+  R + ++       PP+ L  + W+           +T  GD +   AT   ++ +  T  P +K++ + M   C+ L   + L  G  +GAG  L    C   + ++     LLR  ++S DS+  S+ + L  P+         +G+VW+ C+ LKK P +N  A  RA      +VKD LRE  E+   A DD    GT  E  D  ++  EEGGL
Sbjct:   13 VLESHVRSIQEIFQMLEEPPPSSLDKVAWSQ----------VTKLGDEISKQATVAGMLWSGET--PDVKALEENMGAYCNLLHGFILLCHGSTVGAGPTLHASICASAKQVIDCSISLLREAVSSCDSR--SSNKSLSIPK--------LSGLVWEACDALKKTPTTNCTAIGRAMAQVAVSVKDVLRELGELKPAASDDDSADGTSGEAADKPQDSDEEGGL 214          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|298706549|emb|CBJ29519.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.1073 bits (196), Expect = 2.770e-13
Identity = 62/225 (27.56%), Postives = 105/225 (46.67%), Query Frame = 0
Query:   11 LEALGRHLSKLRAATTSLPPAPLTSLQWTASPALQD-ALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMA 234
            LE LG+ +  L   +        +   W+ +    D AL+++  +   + D  T+ +LV     S    +S+  EM   C  ++A+L LL   ++GA   ++  +   VR++L ++++L+         LL   R  R        L   TG VWQ C+EL++ P++N++A RR  +    AVKDT+ EF E    A      +S      E  G++GGL  + A
Sbjct:   11 LEGLGKEIDTLIGHSKHGKGDTFSPTCWSKNSEDVDVALRVIGAASQSIHDGVTRLNLVYKANPSEVASESMSREMGGFCQQMVASLTLL--SSVGASKSMVAYFSAGVRAVLHSLKDLI-------GALLDPSRHAR--------LNGLTGTVWQSCKELQQAPKTNKLACRRQMMQWSVAVKDTIDEFVEAAKAAAMANAGKS------ESAGDKGGLDEQFA 212          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|698784943|ref|XP_009825515.1| (hypothetical protein H257_03220 [Aphanomyces astaci] >gi|574120018|gb|ETV85497.1| hypothetical protein H257_03220 [Aphanomyces astaci])

HSP 1 Score: 74.7146 bits (182), Expect = 1.833e-11
Identity = 70/270 (25.93%), Postives = 109/270 (40.37%), Query Frame = 0
Query:   38 WTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVAMEGGGRERRREGNTQEKVVGWGS 307
            W  +        +L  +G  +  T TKFSLVL   T      S+C  M Q C+ LLAAL + V    GAG  L +  C  V  I   + +L        S  L      R PE         TG +W  C  L+ L +SN ++ +R  L   + + DT++E +  +A A+D      ++ D  E+            ++ELE+    + G   +   E   L  C+  L     + K  + ++  V+          E + Q+  V WGS
Sbjct:   64 WQQNSDFNLGRDVLIAAGGSISSTVTKFSLVLGKETVASDAYSVCHTMFQPCEQLLAALKVAVFA--GAGYALTKELCASVHRIFANVLDL--------STRLHVKDLGRVPE--------LTGRIWDACAALETLSKSNLISTKRVMLQTVAVLNDTVQELQGDVAAAKDALDNTIDDHDHLEQR-----------NVELEDDLDFDMGSQTLTANELRQLQACVDVLQMAQAIAKKGVLSLNAVS----------ETDGQDGCVQWGS 294          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|922407830|ref|XP_013470107.1| (Grap2/cyclin-D-interacting protein [Medicago truncatula] >gi|657405689|gb|KEH44145.1| Grap2/cyclin-D-interacting protein [Medicago truncatula])

HSP 1 Score: 73.1738 bits (178), Expect = 6.023e-11
Identity = 63/217 (29.03%), Postives = 94/217 (43.32%), Query Frame = 0
Query:   13 ALGRHLSKLRAATTSLPPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDD-AGTESEEEDDEEEEGEEGG 228
             LG HL+ +      L   P +S  +      +D +K+     ++V   AT   ++ T     P  K+I + M    ++L   L +  G  +GAG  L     + V+ ++ +   L++   S       + R     EG K  +    G VW+ C  LKK P SN  A  R       +VKD LRE +E+   + DD A TESE  DD   EGE G 
Sbjct:   40 VLGSHLATIHETLQVLDQTPSSSSSFVNKVTWEDVIKM----AEQVSKQATTVGMIWTG--DKPESKAIEETMTSYFNNLQGFLLVSHGSKVGAGPTLSSSIHESVKQVVDSSFRLMKETVS----FYGSHR-----EGQKQLVPQLVGTVWEACSALKKTPTSNITAIGRGMTKVAVSVKDVLREMKELKPVSSDDPADTESEPCDDNSSEGELGN 241          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|743794413|ref|XP_010924164.1| (PREDICTED: uncharacterized protein LOC105047070 [Elaeis guineensis])

HSP 1 Score: 72.4034 bits (176), Expect = 9.618e-11
Identity = 59/203 (29.06%), Postives = 93/203 (45.81%), Query Frame = 0
Query:   29 PPAPLTSLQWTASPALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRH-IASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREM--LAEAEDDAGTESEEEDDEEEEGEEGG 228
            P + L  ++W+           +T  GD +   AT   ++ +  T  P +K++ + M   C+ L   L L  G  +GAG  L    C   + ++     LLR  ++S DS   S+ + L  P+         +G+VW+ C+ LKK P +N  A  RA      +VKD  RE  E+   A A+D AG  S E  D+  + +E G
Sbjct:   32 PASSLDKVEWSQ----------VTKLGDEISKQATIAGMLWSGET--PAVKALEENMGAYCNLLHGFLLLCHGSTVGAGPTLHASICASAKQVIDCSLSLLREAVSSCDS--CSSNKKLSIPK--------LSGLVWEACDALKKTPTTNCTAIGRAMTQVAVSVKDVFRELGELKPAASADDSAGGTSGEAADKTHDSDEEG 212          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|673044439|ref|XP_008876180.1| (hypothetical protein H310_11332 [Aphanomyces invadans] >gi|574467987|gb|ETV95007.1| hypothetical protein H310_11332 [Aphanomyces invadans])

HSP 1 Score: 70.0922 bits (170), Expect = 5.285e-10
Identity = 66/235 (28.09%), Postives = 96/235 (40.85%), Query Frame = 0
Query:   50 LLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEAVEEVA 284
            +L  +G  +    TKFSLVL      P   S+C  + Q C+ LL+AL + V    GAG  L +  C  V  I   + +L        SK L A    R PE         TG +W  C  L+ L +SN +A +R  L   S + DT++E    L  A +    E   ++D               D+ELE+     +  G + E E      C+  L     + K  + A+  VA
Sbjct:   44 VLIAAGGSISHAVTKFSLVLGKEKVTPDSYSVCPTLFQPCEQLLSALKVAVFA--GAGYALTKELCSGVHGIFANVLDL--------SKRLEAKDLTRVPE--------LTGRIWDGCAALETLSKSNLIATKRVMLQSVSVLNDTVQELSGDLQAATEALINEQTTDNDHGAR-----------DVELEDDL-DFDMDGVLSEHEVHQFKLCVEMLQMAAAIAKKGVLALNSVA 248          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|1173952690|gb|OQS00307.1| (hypothetical protein THRCLA_06037 [Thraustotheca clavata])

HSP 1 Score: 67.3958 bits (163), Expect = 3.885e-9
Identity = 57/205 (27.80%), Postives = 91/205 (44.39%), Query Frame = 0
Query:   38 WTASPALQDALKLLTDSGDRVRDTATKFSLVLTT--TTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEE 240
            W  +     A  +L  +   +    TKFSLV+    T S     SIC  + + C  LLAAL + +    GAG  L +   Q    I+  + EL+R +   + K        R PE         TG +W  C  ++ L +SN +A +R  L   + + DT+ E   +LAE  + +  +  E + EEE+     +   M+ LEL++
Sbjct:   33 WQQNCDFTLARDVLLAAAGSINHQITKFSLVMAKEKTPSEAETLSICQAIYEPCQQLLAALKVAIFA--GAGFALTKEMIQGGLRIVTNMHELIRLVGVKEFK--------RVPEF--------TGRIWDSCNLMQNLSKSNLIATKRIMLQTVAVLNDTIIELDGVLAEQSNKSEEDVHERNVEEEDDLSFDMDETMSPLELQQ 219          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|397621718|gb|EJK66433.1| (hypothetical protein THAOC_12649 [Thalassiosira oceanica])

HSP 1 Score: 63.929 bits (154), Expect = 9.461e-8
Identity = 75/279 (26.88%), Postives = 119/279 (42.65%), Query Frame = 0
Query:   30 PAPLTSLQWTASP-ALQDALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKK-LPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAEDDAGTESEEEDDEEEEGEEGGLAGEMADLELEEAFWGENGGGAMREWEKENLSRCLVPLGHCGEMVKGFLEA------VEEVAMEGGGRER--RREGNT 298
            P P  S  W   P  +Q A +LL+D  D +  T+TK++LV        G  ++  E+R+  + + A   LL  P  G+   L     Q  R+++ +   L++     D     AP      +G  +  A +TG VW  C+ L+K LPR NR A RR  +       +++ EF  +L     D     EEE    +E        +  + E++ A    N    + +  K  L+  L      G++V+ F+E        E VA EG   E   +R+G T
Sbjct:  106 PGPALS-HWRTLPLQVQSAYQLLSDGADYIHATSTKYTLVAKVDAKEGG--NLALELRKGAELVGAGTLLLFSPDCGSSRSLKRYTKQFARAVISSTVALVKSFV--DGLAFGAPH-----DG-NNIGAQRTGAVWAACDNLRKVLPRGNRAAMRRELMVWVRDCSESIEEFGGILELGPRDDTCGGEEEGCMTDE-------DQFTESEMDVARAAVN----LMKCSKNVLALVLKACESAGDVVESFVEKSKDGVEAEAVAPEGSSSESGFQRKGET 362          
BLAST of EWM25521.1 vs. NCBI_GenBank
Match: gi|1021569049|ref|XP_016175748.1| (uncharacterized protein LOC107618251 [Arachis ipaensis])

HSP 1 Score: 62.3882 bits (150), Expect = 2.060e-7
Identity = 66/232 (28.45%), Postives = 96/232 (41.38%), Query Frame = 0
Query:   13 ALGRHLSKLRAATTSLPPAPLTSLQWTASPALQ-----DALKLLTDSGDRVRDTATKFSLVLTTTTSGPGIKSICDEMRQSCDSLLAALALLVGPAIGAGGPLMELYCQQVRSILRAIEELLRHIASPDSKLLSAPRPLRSPEGVKDELAPKTGVVWQQCEELKKLPRSNRVAYRRAFLTHQSAVKDTLREFREMLAEAE---DDA--------GTESEEEDDEEEEGEEGG 228
             LG HL+ +           L  L  TAS AL      D +K+    GD V+  AT   ++ T     PG K+I + M    ++L   L L     +GAG  L       V+ ++ +   L++   S      S  + L  P+ V        G VW+ C+ LKK P +N  A  RA      +VKD LRE +E+  ++    D+          TE E  DD   EG+ G 
Sbjct:   13 VLGSHLANIHET--------LQVLDQTASSALDKVSWDDVIKM----GDEVQKQATTVGMLWTG--EKPGAKAIEENMTTYFNTLQGFLLLSHASTVGAGPTLSSSVHASVKHVVDSSFRLMKDTVSSYGSH-SKDQKLSVPQLV--------GAVWEACDALKKTPATNITAIGRAMTQVAVSVKDVLREMKELKPDSSAVPDNTAVGESCAEATEDEPHDDNLSEGDLGN 221          
The following BLAST results are available for this feature:
BLAST of EWM25521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107287|gb|EWM25521.1|0.000e+0100.00hypothetical protein Naga_100032g38 [Nannochlorops... [more]
gi|672162177|ref|XP_008800922.1|1.973e-1329.02PREDICTED: uncharacterized protein LOC103715161 [P... [more]
gi|298706549|emb|CBJ29519.1|2.770e-1327.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|698784943|ref|XP_009825515.1|1.833e-1125.93hypothetical protein H257_03220 [Aphanomyces astac... [more]
gi|922407830|ref|XP_013470107.1|6.023e-1129.03Grap2/cyclin-D-interacting protein [Medicago trunc... [more]
gi|743794413|ref|XP_010924164.1|9.618e-1129.06PREDICTED: uncharacterized protein LOC105047070 [E... [more]
gi|673044439|ref|XP_008876180.1|5.285e-1028.09hypothetical protein H310_11332 [Aphanomyces invad... [more]
gi|1173952690|gb|OQS00307.1|3.885e-927.80hypothetical protein THRCLA_06037 [Thraustotheca c... [more]
gi|397621718|gb|EJK66433.1|9.461e-826.88hypothetical protein THAOC_12649 [Thalassiosira oc... [more]
gi|1021569049|ref|XP_016175748.1|2.060e-728.45uncharacterized protein LOC107618251 [Arachis ipae... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5183rna5183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications