EWM25515.1, cds5170 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|585107281|gb|EWM25515.1| (e3 ubiquitin ligase [Nannochloropsis gaditana]) HSP 1 Score: 1070.07 bits (2766), Expect = 0.000e+0 Identity = 527/527 (100.00%), Postives = 527/527 (100.00%), Query Frame = 0
Query: 1 MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA 527
MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA
Sbjct: 1 MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA 527
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|1149701616|ref|XP_020163540.1| (E3 ubiquitin ligase BIG BROTHER-related-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 80.1073 bits (196), Expect = 5.915e-13 Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
RG+S N+LA L AED +N C IC F+EGE+L+ LPC +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct: 208 RGVSANTLASLPLVTYQAEDNQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVSTP 283
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|357148802|ref|XP_003574899.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Brachypodium distachyon] >gi|944063705|gb|KQJ99295.1| hypothetical protein BRADI_3g42410 [Brachypodium distachyon]) HSP 1 Score: 78.1814 bits (191), Expect = 2.898e-12 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
RGLS ++LA L A+D +N C IC F+EGE+L+ LPC +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct: 222 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 297
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|721663376|ref|XP_010235389.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Brachypodium distachyon] >gi|944063704|gb|KQJ99294.1| hypothetical protein BRADI_3g42410 [Brachypodium distachyon]) HSP 1 Score: 78.1814 bits (191), Expect = 3.055e-12 Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
RGLS ++LA L A+D +N C IC F+EGE+L+ LPC +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct: 221 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 296
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|474382286|gb|EMS64698.1| (E3 ubiquitin ligase BIG BROTHER-related protein [Triticum urartu]) HSP 1 Score: 77.0258 bits (188), Expect = 3.255e-12 Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
RG+S ++LA L AED +N C IC F+E E+L+ LPC +H YH+ CI++WL+ N+ CP+C A++++P
Sbjct: 161 RGVSADTLASLPSVTYQAEDNQDSNMEQCVICRVEFEESESLVALPC--KHSYHSDCIKQWLQLNKVCPMCSAEVSTP 236
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|1102793775|ref|XP_019051736.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Nelumbo nucifera]) HSP 1 Score: 73.9442 bits (180), Expect = 8.749e-12 Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0
Query: 390 GLRRGLSRNSLAK-LRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALV 471
G+ RGL + + K LR + E G + C IC ++EGE+L+ LPC H YH+ CI WL+ + CP+C D++SP LV
Sbjct: 85 GMNRGLPADEVTKFLRPCEYKIECKNGLDRCVICQVDYEEGESLVSLPCE--HPYHSDCISNWLQIKKVCPICSTDVSSPPLV 165
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|326529613|dbj|BAK04753.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 74.7146 bits (182), Expect = 3.750e-11 Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
RG+S ++LA L A+D +N C IC F+EGE+L+ LPC +H YH+ CI +WL+ N+ CP+C A++++
Sbjct: 212 RGVSADTLASLPSVTYQAQDKQESNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVST 286
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|357159651|ref|XP_003578515.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Brachypodium distachyon] >gi|944055579|gb|KQJ91217.1| hypothetical protein BRADI_4g36320 [Brachypodium distachyon]) HSP 1 Score: 74.7146 bits (182), Expect = 6.412e-11 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
RGLS ++LA L +DV N C IC F+EGE+L+ LPC +H YH CI +WL+ N+ CP+C A++++
Sbjct: 257 RGLSADTLASLPSVTYKTKDVQDGNTEQCVICRVEFEEGESLVALPC--KHSYHPDCINQWLQINKVCPMCSAEVST 331
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|573954843|ref|XP_006659662.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Oryza brachyantha]) HSP 1 Score: 73.9442 bits (180), Expect = 7.820e-11 Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADI 465
RGLS ++LA L A+D +N C IC F+EGE+L+ LPC +H YH+ CI +WL+ N+ CP+C A++
Sbjct: 221 RGLSADTLASLPSITYRAQDKQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEV 293
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|514732598|ref|XP_004957470.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Setaria italica]) HSP 1 Score: 72.7886 bits (177), Expect = 2.226e-10 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
RGLS ++LA L A++V N C IC F++GE+L+ LPC +H YH CI +WL+ N+ CP+C A++++
Sbjct: 243 RGLSADTLASLPSVKYKAQNVQDGNTEQCVICRVEFEDGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 317 The following BLAST results are available for this feature:
BLAST of EWM25515.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|