EWM25509.1, cds5148 (CDS) Nannochloropsis gaditana

Overview
NameEWM25509.1
Unique Namecds5148
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:294892..295229 +
Alignment locationCM002465.1:295338..295506 +

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Properties
Property NameValue
Protein idEWM25509.1
ProductUbiquitin
Orig transcript idgnl|cribi|Naga_100032g11.252.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:294892..295229 +
CM002465.1supercontigCM002465.1:295338..295506 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
[Close]
BLAST of EWM25509.1 vs. NCBI_GenBank
Match: gi|585107275|gb|EWM25509.1| (Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 340.887 bits (873), Expect = 1.247e-118
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MQLFVVLPAVAFTGKSRTVSLEAGPPESTTIGDLKKAIQVRSAQAYKSDIRDSSTFRPSLRLGTRNCNASSSNGSAVDNKERLGGIPAALQRLTLGGRHLRDDQTLADCVISGSVSSSLGGRHESSGACPFMDLQEQRCAFVLVYRCVVRNPTRCLSRKGREGSPQAP 168
            MQLFVVLPAVAFTGKSRTVSLEAGPPESTTIGDLKKAIQVRSAQAYKSDIRDSSTFRPSLRLGTRNCNASSSNGSAVDNKERLGGIPAALQRLTLGGRHLRDDQTLADCVISGSVSSSLGGRHESSGACPFMDLQEQRCAFVLVYRCVVRNPTRCLSRKGREGSPQAP
Sbjct:    1 MQLFVVLPAVAFTGKSRTVSLEAGPPESTTIGDLKKAIQVRSAQAYKSDIRDSSTFRPSLRLGTRNCNASSSNGSAVDNKERLGGIPAALQRLTLGGRHLRDDQTLADCVISGSVSSSLGGRHESSGACPFMDLQEQRCAFVLVYRCVVRNPTRCLSRKGREGSPQAP 168
The following BLAST results are available for this feature:
BLAST of EWM25509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107275|gb|EWM25509.1|1.247e-118100.00Ubiquitin [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5160rna5160Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications