EWM25539.1, cds5136 (CDS) Nannochloropsis gaditana

Overview
NameEWM25539.1
Unique Namecds5136
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:252193..253301 +
Alignment locationCM002465.1:253505..253825 +
Alignment locationCM002465.1:254036..254250 +
Alignment locationCM002465.1:254498..254700 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25539.1
Producte3 ubiquitin-protein ligase
Orig transcript idgnl|cribi|Naga_100232g4.7107.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:252193..253301 +
CM002465.1supercontigCM002465.1:253505..253825 +
CM002465.1supercontigCM002465.1:254036..254250 +
CM002465.1supercontigCM002465.1:254498..254700 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|585107309|gb|EWM25539.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 1217.99 bits (3150), Expect = 0.000e+0
Identity = 615/615 (100.00%), Postives = 615/615 (100.00%), Query Frame = 0
Query:    1 MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL 615
            MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL
Sbjct:    1 MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL 615          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|553187320|ref|XP_005854584.1| (ring u-box domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294477|gb|EKU21777.1| ring u-box domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:   61 STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV 362
            STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV
Sbjct:   25 STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV 326          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|813116412|ref|XP_012195473.1| (hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65] >gi|641540042|gb|KDO33837.1| hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 130.183 bits (326), Expect = 6.254e-30
Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 0
Query:  222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGG 403
            ++ A+  +++  L WF +GN WV     +C     G  Y ++L +I++ Y+ +  P L+ +  +P  CFC+PC +R+  ++Q   R  +GAS   I AL  V +   +F   +A +C ICL EY+E + +R+L C   HHFH  CVD+WL +NA CP CR  + P+   P        +G D G
Sbjct:  133 LQSAKYGMELMGLFWFLVGNMWVISDEDHCSTQGDGHMYNMALAMIIICYIKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIAALSSVPYTPHLFPDEDA-SCCICLNEYDESQHVRILHC--NHHFHKECVDEWLVVNATCPTCRTSIDPNHAEP-----AASSGRDPG 307          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|669170441|ref|XP_008620569.1| (hypothetical protein SDRG_16148 [Saprolegnia diclina VS20] >gi|530727759|gb|EQC26001.1| hypothetical protein SDRG_16148 [Saprolegnia diclina VS20])

HSP 1 Score: 129.413 bits (324), Expect = 1.321e-29
Identity = 65/184 (35.33%), Postives = 101/184 (54.89%), Query Frame = 0
Query:  222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGG 403
            ++ A+  +++  L WF +GN WV     +C     G  Y ++L +I++ YV +  P L+ +  +P  CFC+PC +R+  ++Q   R  +GAS   I AL  V +   +F   +A +C ICL EY+E + +R+L C   HHFH  CVD+WL +NA CP CR  + P+   P        +G D G
Sbjct:  135 LQSAKYGMELMGLFWFLVGNMWVISDEDHCSTQGDGHMYNMALAMIIICYVKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIAALSSVPYTPHLFPDEDA-SCCICLNEYDESQHVRILHC--NHHFHKECVDEWLLVNATCPTCRTSIDPNHVEP-----AASSGRDPG 309          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|698802042|ref|XP_009834050.1| (hypothetical protein H257_09515 [Aphanomyces astaci] >gi|574111008|gb|ETV76505.1| hypothetical protein H257_09515 [Aphanomyces astaci])

HSP 1 Score: 129.798 bits (325), Expect = 1.440e-29
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = 0
Query:  222 VEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG--IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGRE 392
            +   +  L++  L WF +GN W+        T  G  ++ ++  ++ + Y  +  P L+ +  +P  CFC+PC +RL  ++Q   R  +GA++  I  LP V +   MF   +A +C ICL EY   + LR+L C  KHHFH  CVD+WL +NA CP CR  + P+ GA  R 
Sbjct:  159 LNSIKYSLELLGLFWFLVGNMWIISDEEHSSTKAGGHLYNMAFAMVTICYAKIFLPCLILVALLPIVCFCLPCLIRLLNRMQDPMRG-KGATAEIIAKLPSVPYASSMFPDEDA-SCCICLNEYIHDQTLRVLPC--KHHFHQACVDEWLVVNATCPTCRTSIDPNEGAVPRH 327          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|676383185|ref|XP_009034871.1| (hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens] >gi|323454158|gb|EGB10028.1| hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens])

HSP 1 Score: 129.798 bits (325), Expect = 2.218e-29
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 0
Query:  206 AGRPHPDEGGQG---PSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG---IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGM-FDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEV 382
            A RP PD          V+V  AR  LD  ALIWF +GN W+ G         G   I+   + ++V+ Y  +  P + A+  VP  CFC+PC +RL   L     A RGA+  ++  LP V +   M     E   C++C+++YE+G+ LR+L C  KH FHV CVDQWL +NA CP CR+ +
Sbjct:  136 APRPPPDADRASRRRYLVMVTNARNSLDALALIWFVVGNMWLLGGADDSCAEAGKSPIYVTDVVMLVVQYGQICLPCIFAIAMVPVFCFCLPCVIRLLASLH-DPVAGRGATKRDLARLPTVPYSENMELLKGEDPCCSVCISDYEKGDKLRVLPC--KHLFHVDCVDQWLSVNATCPLCRKSI 316          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|1173952099|gb|OQR99843.1| (transmembrane protein [Achlya hypogyna])

HSP 1 Score: 126.716 bits (317), Expect = 6.329e-29
Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = 0
Query:  222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPS--SGAPGRE 392
            ++ A+  +++  L WF +GN WV     +C     G  Y ++L +I++ Y+ +  P L+ +  +P  CFC+PC +R+  ++Q   R  +GAS   I+AL  V +   +F   +A +C ICL EY E + +R+L C   HHFH  CVD+WL +NA CP CR  + P+     P R+
Sbjct:  119 LQSAKYCMELMGLFWFLVGNMWVISDEDHCSTQGGGHMYNMALAMIIICYIKIFLPCLILVALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIDALSSVPYTPNLFPDEDA-SCCICLNEYSEAQHVRILHC--NHHFHKECVDEWLVVNATCPTCRTSIDPNRVEATPDRD 289          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|585106085|gb|EWM24570.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 127.487 bits (319), Expect = 8.693e-29
Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 0
Query:  221 LVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG---IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKF-----------GVGMFDG----------------------AEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSS 386
             +  AR  LD F LIWF +GN W+FG        P    ++ + +  + + Y  +  P ++ ++ +P  CFC+PC +R+  ++Q   R  +GA+ + IN LP++K+             G  +G                      + + +CA+C++EY   E +RLL C   H+FH  CVD+WL++NA CP CR  ++P S
Sbjct:   27 FLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPC--AHYFHASCVDEWLKVNASCPTCRASILPES 225          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|673022498|ref|XP_008865210.1| (hypothetical protein H310_03198 [Aphanomyces invadans] >gi|574478438|gb|ETW05433.1| hypothetical protein H310_03198 [Aphanomyces invadans])

HSP 1 Score: 124.79 bits (312), Expect = 6.494e-28
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 0
Query:  229 LDIFALIWFTLGNAWVFGSRYCRFTSPG--IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAP 389
            L++  L WF +GN W+        T  G  ++ ++  +I + Y+ +  P L+ +  +P  CFC+PC +RL  ++Q   R  +GA++  I  LP   +   MF   +A +C ICL EY   + +R+L C  KHHFH  CVD+WL +NA CP CR+ + P+   P
Sbjct:  161 LELLGLFWFLVGNMWIISDEEHSSTKAGGHLYNMAFAMITICYIKIFLPCLILVALLPIVCFCLPCLIRLLNRMQDPMRG-KGAAAEIIAKLPSAPYVPSMFPDEDA-SCCICLNEYVRDQTVRVLHC--KHHFHQACVDEWLVVNATCPTCRKSIDPNEAPP 319          
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|1173934696|gb|OQR85950.1| (transmembrane protein [Thraustotheca clavata])

HSP 1 Score: 124.02 bits (310), Expect = 1.000e-27
Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 0
Query:  218 PSV--LVEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPG-IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPS 385
            PSV  +++ A+  L++  L WF +GN WV     +C     G I+ +++ ++++ Y+ +  P L+ L  +P  CFC+PC +R+  ++Q   R  +GA+   I AL  VK+   +F   E  +C ICL EY + + LR+L C   HHFH  CVD+WL +NA CP CR  + P+
Sbjct:  124 PSVKSVLQSAKYCLELMGLFWFLVGNMWVISDEDHCSANGGGHIYNMAMAMVIICYIKIFLPCLILLALLPVVCFCLPCLIRILNRMQDPMRG-KGATKEMIEALSSVKYTPDLFPPDEDASCCICLNEYTDNQELRILHC--NHHFHKDCVDEWLVVNATCPTCRTSIDPN 292          
The following BLAST results are available for this feature:
BLAST of EWM25539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107309|gb|EWM25539.1|0.000e+0100.00e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
gi|553187320|ref|XP_005854584.1|0.000e+0100.00ring u-box domain-containing protein, partial [Nan... [more]
gi|813116412|ref|XP_012195473.1|6.254e-3034.78hypothetical protein SPRG_01716 [Saprolegnia paras... [more]
gi|669170441|ref|XP_008620569.1|1.321e-2935.33hypothetical protein SDRG_16148 [Saprolegnia dicli... [more]
gi|698802042|ref|XP_009834050.1|1.440e-2935.26hypothetical protein H257_09515 [Aphanomyces astac... [more]
gi|676383185|ref|XP_009034871.1|2.218e-2938.59hypothetical protein AURANDRAFT_36689 [Aureococcus... [more]
gi|1173952099|gb|OQR99843.1|6.329e-2935.43transmembrane protein [Achlya hypogyna][more]
gi|585106085|gb|EWM24570.1|8.693e-2930.20e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
gi|673022498|ref|XP_008865210.1|6.494e-2835.58hypothetical protein H310_03198 [Aphanomyces invad... [more]
gi|1173934696|gb|OQR85950.1|1.000e-2736.63transmembrane protein [Thraustotheca clavata][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5148rna5148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications