EWM25539.1, cds5136 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|585107309|gb|EWM25539.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 1217.99 bits (3150), Expect = 0.000e+0 Identity = 615/615 (100.00%), Postives = 615/615 (100.00%), Query Frame = 0 Query: 1 MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL 615 MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL Sbjct: 1 MDGGLSPSSILHGLGSIRTGQWTSALTATWHITQIVAAVLVLIAERGRSCDQKLNLWLIVSTCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGGRDLEAGGREVAAEDGGTGGWQEEEEEEEEGEEEEGEGEGEGGEEEEGAEEAKEEEVEGEEEEREREEEGEERRSAVASPEGLPRALWAGQGRGMTLLLESAQAVAREGALIPRPRFTLTPLAAAMQGWQGRGGAHAPRGEEGPREGPLLGRCVHRGGEAEGLAPLPKAVCIMNVFHVFGGHLKVKAWWAVVKGKVKRVQVVARPHGAHRSYL 615
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|553187320|ref|XP_005854584.1| (ring u-box domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294477|gb|EKU21777.1| ring u-box domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 612.838 bits (1579), Expect = 0.000e+0 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0 Query: 61 STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV 362 STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV Sbjct: 25 STCRVVLRLALSSVALKMSNAAWAHMRPLLLFMPPMTQAQATDRSPAGPRPPTPARPPTPPRDALVVRIHPEGPPTVRDAGLSAERGSARGERRQRRGGEERGEEGAAPEEGRGRRRRASQDRRAGRATANVDAEAGPRTRGGTSAGRPHPDEGGQGPSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPGIFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHV 326
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|813116412|ref|XP_012195473.1| (hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65] >gi|641540042|gb|KDO33837.1| hypothetical protein SPRG_01716 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 130.183 bits (326), Expect = 6.254e-30 Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 0 Query: 222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGG 403 ++ A+ +++ L WF +GN WV +C G Y ++L +I++ Y+ + P L+ + +P CFC+PC +R+ ++Q R +GAS I AL V + +F +A +C ICL EY+E + +R+L C HHFH CVD+WL +NA CP CR + P+ P +G D G Sbjct: 133 LQSAKYGMELMGLFWFLVGNMWVISDEDHCSTQGDGHMYNMALAMIIICYIKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIAALSSVPYTPHLFPDEDA-SCCICLNEYDESQHVRILHC--NHHFHKECVDEWLVVNATCPTCRTSIDPNHAEP-----AASSGRDPG 307
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|669170441|ref|XP_008620569.1| (hypothetical protein SDRG_16148 [Saprolegnia diclina VS20] >gi|530727759|gb|EQC26001.1| hypothetical protein SDRG_16148 [Saprolegnia diclina VS20]) HSP 1 Score: 129.413 bits (324), Expect = 1.321e-29 Identity = 65/184 (35.33%), Postives = 101/184 (54.89%), Query Frame = 0 Query: 222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGREGEGGGNGEDGG 403 ++ A+ +++ L WF +GN WV +C G Y ++L +I++ YV + P L+ + +P CFC+PC +R+ ++Q R +GAS I AL V + +F +A +C ICL EY+E + +R+L C HHFH CVD+WL +NA CP CR + P+ P +G D G Sbjct: 135 LQSAKYGMELMGLFWFLVGNMWVISDEDHCSTQGDGHMYNMALAMIIICYVKIFLPCLILMALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIAALSSVPYTPHLFPDEDA-SCCICLNEYDESQHVRILHC--NHHFHKECVDEWLLVNATCPTCRTSIDPNHVEP-----AASSGRDPG 309
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|698802042|ref|XP_009834050.1| (hypothetical protein H257_09515 [Aphanomyces astaci] >gi|574111008|gb|ETV76505.1| hypothetical protein H257_09515 [Aphanomyces astaci]) HSP 1 Score: 129.798 bits (325), Expect = 1.440e-29 Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = 0 Query: 222 VEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG--IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAPGRE 392 + + L++ L WF +GN W+ T G ++ ++ ++ + Y + P L+ + +P CFC+PC +RL ++Q R +GA++ I LP V + MF +A +C ICL EY + LR+L C KHHFH CVD+WL +NA CP CR + P+ GA R Sbjct: 159 LNSIKYSLELLGLFWFLVGNMWIISDEEHSSTKAGGHLYNMAFAMVTICYAKIFLPCLILVALLPIVCFCLPCLIRLLNRMQDPMRG-KGATAEIIAKLPSVPYASSMFPDEDA-SCCICLNEYIHDQTLRVLPC--KHHFHQACVDEWLVVNATCPTCRTSIDPNEGAVPRH 327
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|676383185|ref|XP_009034871.1| (hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens] >gi|323454158|gb|EGB10028.1| hypothetical protein AURANDRAFT_36689 [Aureococcus anophagefferens]) HSP 1 Score: 129.798 bits (325), Expect = 2.218e-29 Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 0 Query: 206 AGRPHPDEGGQG---PSVLVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG---IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGM-FDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEV 382 A RP PD V+V AR LD ALIWF +GN W+ G G I+ + ++V+ Y + P + A+ VP CFC+PC +RL L A RGA+ ++ LP V + M E C++C+++YE+G+ LR+L C KH FHV CVDQWL +NA CP CR+ + Sbjct: 136 APRPPPDADRASRRRYLVMVTNARNSLDALALIWFVVGNMWLLGGADDSCAEAGKSPIYVTDVVMLVVQYGQICLPCIFAIAMVPVFCFCLPCVIRLLASLH-DPVAGRGATKRDLARLPTVPYSENMELLKGEDPCCSVCISDYEKGDKLRVLPC--KHLFHVDCVDQWLSVNATCPLCRKSI 316
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|1173952099|gb|OQR99843.1| (transmembrane protein [Achlya hypogyna]) HSP 1 Score: 126.716 bits (317), Expect = 6.329e-29 Identity = 62/175 (35.43%), Postives = 99/175 (56.57%), Query Frame = 0 Query: 222 VEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPGIFY-VSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPS--SGAPGRE 392 ++ A+ +++ L WF +GN WV +C G Y ++L +I++ Y+ + P L+ + +P CFC+PC +R+ ++Q R +GAS I+AL V + +F +A +C ICL EY E + +R+L C HHFH CVD+WL +NA CP CR + P+ P R+ Sbjct: 119 LQSAKYCMELMGLFWFLVGNMWVISDEDHCSTQGGGHMYNMALAMIIICYIKIFLPCLILVALLPVVCFCLPCLIRILNRMQDPMRG-KGASKEMIDALSSVPYTPNLFPDEDA-SCCICLNEYSEAQHVRILHC--NHHFHKECVDEWLVVNATCPTCRTSIDPNRVEATPDRD 289
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|585106085|gb|EWM24570.1| (e3 ubiquitin-protein ligase [Nannochloropsis gaditana]) HSP 1 Score: 127.487 bits (319), Expect = 8.693e-29 Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 0 Query: 221 LVEKAREILDIFALIWFTLGNAWVFGSRYCRFTSPG---IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKF-----------GVGMFDG----------------------AEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSS 386 + AR LD F LIWF +GN W+FG P ++ + + + + Y + P ++ ++ +P CFC+PC +R+ ++Q R +GA+ + IN LP++K+ G +G + + +CA+C++EY E +RLL C H+FH CVD+WL++NA CP CR ++P S Sbjct: 27 FLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRG-KGATPSMINKLPMMKYRQIQAEKAATASAGSLEGQAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPC--AHYFHASCVDEWLKVNASCPTCRASILPES 225
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|673022498|ref|XP_008865210.1| (hypothetical protein H310_03198 [Aphanomyces invadans] >gi|574478438|gb|ETW05433.1| hypothetical protein H310_03198 [Aphanomyces invadans]) HSP 1 Score: 124.79 bits (312), Expect = 6.494e-28 Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 0 Query: 229 LDIFALIWFTLGNAWVFGSRYCRFTSPG--IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPSSGAP 389 L++ L WF +GN W+ T G ++ ++ +I + Y+ + P L+ + +P CFC+PC +RL ++Q R +GA++ I LP + MF +A +C ICL EY + +R+L C KHHFH CVD+WL +NA CP CR+ + P+ P Sbjct: 161 LELLGLFWFLVGNMWIISDEEHSSTKAGGHLYNMAFAMITICYIKIFLPCLILVALLPIVCFCLPCLIRLLNRMQDPMRG-KGAAAEIIAKLPSAPYVPSMFPDEDA-SCCICLNEYVRDQTVRVLHC--KHHFHQACVDEWLVVNATCPTCRKSIDPNEAPP 319
BLAST of EWM25539.1 vs. NCBI_GenBank
Match: gi|1173934696|gb|OQR85950.1| (transmembrane protein [Thraustotheca clavata]) HSP 1 Score: 124.02 bits (310), Expect = 1.000e-27 Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 0 Query: 218 PSV--LVEKAREILDIFALIWFTLGNAWVFGSR-YCRFTSPG-IFYVSLGIIVMTYVTMLFPVLLALLFVPFACFCMPCFLRLAIQLQAQDRASRGASSAEINALPVVKFGVGMFDGAEAGTCAICLAEYEEGEALRLLQCPGKHHFHVGCVDQWLRINAVCPCCREEVVPS 385 PSV +++ A+ L++ L WF +GN WV +C G I+ +++ ++++ Y+ + P L+ L +P CFC+PC +R+ ++Q R +GA+ I AL VK+ +F E +C ICL EY + + LR+L C HHFH CVD+WL +NA CP CR + P+ Sbjct: 124 PSVKSVLQSAKYCLELMGLFWFLVGNMWVISDEDHCSANGGGHIYNMAMAMVIICYIKIFLPCLILLALLPVVCFCLPCLIRILNRMQDPMRG-KGATKEMIEALSSVKYTPDLFPPDEDASCCICLNEYTDNQELRILHC--NHHFHKDCVDEWLVVNATCPTCRTSIDPN 292 The following BLAST results are available for this feature:
BLAST of EWM25539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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