EWM25542.1, cds5134 (CDS) Nannochloropsis gaditana

Overview
NameEWM25542.1
Unique Namecds5134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:250887..250996 -
Alignment locationCM002465.1:249518..250646 -
Alignment locationCM002465.1:249152..249338 -
Alignment locationCM002465.1:248558..248811 -

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Properties
Property NameValue
Protein idEWM25542.1
ProductRan binding domain protein
Orig transcript idgnl|cribi|Naga_100232g6.7110.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:250887..250996 -
CM002465.1supercontigCM002465.1:249518..250646 -
CM002465.1supercontigCM002465.1:249152..249338 -
CM002465.1supercontigCM002465.1:248558..248811 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0046907intracellular transport
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005635nuclear envelope
GO:0005643nuclear pore
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR015007NUP2/50/61
IPR000156Ran_bind_dom
Homology
[Close]
BLAST of EWM25542.1 vs. NCBI_GenBank
Match: gi|585107312|gb|EWM25542.1| (Ran binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1124.38 bits (2907), Expect = 0.000e+0
Identity = 559/559 (100.00%), Postives = 559/559 (100.00%), Query Frame = 0 
Query:    1 MKRSNERGQLSKEEYERDEEEYGEGGGADTFRKADESVLKTRKIVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGRLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYPPSAGAGGGEGGGEEEDAMPLLAPDKAVKQKKDPHEVFEKDPVRVYRLDKESKTWVDMGKGSLGLYRDPAAKKQWLAVRNITGKVVLSCALTPPMSFSTMEKASSVAFACKPVLDTTAAQEMMTLRIKVKDGLGELVKKMNELKDGK 559
            MKRSNERGQLSKEEYERDEEEYGEGGGADTFRKADESVLKTRKIVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGRLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYPPSAGAGGGEGGGEEEDAMPLLAPDKAVKQKKDPHEVFEKDPVRVYRLDKESKTWVDMGKGSLGLYRDPAAKKQWLAVRNITGKVVLSCALTPPMSFSTMEKASSVAFACKPVLDTTAAQEMMTLRIKVKDGLGELVKKMNELKDGK
Sbjct:    1 MKRSNERGQLSKEEYERDEEEYGEGGGADTFRKADESVLKTRKIVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGRLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYPPSAGAGGGEGGGEEEDAMPLLAPDKAVKQKKDPHEVFEKDPVRVYRLDKESKTWVDMGKGSLGLYRDPAAKKQWLAVRNITGKVVLSCALTPPMSFSTMEKASSVAFACKPVLDTTAAQEMMTLRIKVKDGLGELVKKMNELKDGK 559
[Close]
BLAST of EWM25542.1 vs. NCBI_GenBank
Match: gi|553179956|ref|XP_005852794.1| (zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526] >gi|422295740|gb|EKU23039.1| zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0
Identity = 369/371 (99.46%), Postives = 370/371 (99.73%), Query Frame = 0 
Query:   43 KIVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGRLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYP 413
            +IVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGG LKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYP
Sbjct:  236 QIVKASRRFSGGEGSLSSAGSSAPARGSQLPASNPFAGFSFAKTASSSSGSSSGGGNTNTMTSQVGLGGPSSSLSMGARPSENAFSADAPSFPSSLGLQNGQGSTKASLSSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGMLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEGPTWVAPHAAQEQPQQAGRLAPPPTSFRSAPVLPTSFDATSNAEAEGRKGAGGGEEGEDAARAQSYP 606
The following BLAST results are available for this feature:
BLAST of EWM25542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107312|gb|EWM25542.1|0.000e+0100.00Ran binding domain protein [Nannochloropsis gadita... [more]
gi|553179956|ref|XP_005852794.1|0.000e+099.46zinc finger ran-binding domain-containing protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5146rna5146Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications