EWM25548.1, cds5125 (CDS) Nannochloropsis gaditana

Overview
NameEWM25548.1
Unique Namecds5125
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:223138..223219 +
Alignment locationCM002465.1:223272..223363 +
Alignment locationCM002465.1:223862..223973 +
Alignment locationCM002465.1:224149..225587 +
Alignment locationCM002465.1:226329..226613 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25548.1
Productfha domain-containing protein
Orig transcript idgnl|cribi|Naga_100130g5.10551.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:223138..223219 +
CM002465.1supercontigCM002465.1:223272..223363 +
CM002465.1supercontigCM002465.1:223862..223973 +
CM002465.1supercontigCM002465.1:224149..225587 +
CM002465.1supercontigCM002465.1:226329..226613 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR017907Znf_RING_CS
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR000253FHA_dom
IPR001841Znf_RING
Homology
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|585107319|gb|EWM25548.1| (fha domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1379 bits (3568), Expect = 0.000e+0
Identity = 669/669 (100.00%), Postives = 669/669 (100.00%), Query Frame = 0
Query:    1 MPSMSFGTASGSSVMSGGRADQEVSMAMTEENLARERTTHKTAFLKCAPWFGGVMVLETMAPAASINLQGHGGNETGHKAEEFARGAVVDDGIERTLCLVEPKPSARQPQDKIPTLIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEILQVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLKAGPDKDPEETLRDLEVHGQCQRGLQQGVGAKGGPPDVEKGGEAFTNRAHPRACPDVGVLHFKVVHVFISTMKSSVPLYHLSGLYRTVHFTCGRQLISVCLRQKINVHCLGHMSDLTLHKKACPREILPVHVFVSLGLWHVSRIHTFEH 669
            MPSMSFGTASGSSVMSGGRADQEVSMAMTEENLARERTTHKTAFLKCAPWFGGVMVLETMAPAASINLQGHGGNETGHKAEEFARGAVVDDGIERTLCLVEPKPSARQPQDKIPTLIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEILQVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLKAGPDKDPEETLRDLEVHGQCQRGLQQGVGAKGGPPDVEKGGEAFTNRAHPRACPDVGVLHFKVVHVFISTMKSSVPLYHLSGLYRTVHFTCGRQLISVCLRQKINVHCLGHMSDLTLHKKACPREILPVHVFVSLGLWHVSRIHTFEH
Sbjct:    1 MPSMSFGTASGSSVMSGGRADQEVSMAMTEENLARERTTHKTAFLKCAPWFGGVMVLETMAPAASINLQGHGGNETGHKAEEFARGAVVDDGIERTLCLVEPKPSARQPQDKIPTLIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEILQVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLKAGPDKDPEETLRDLEVHGQCQRGLQQGVGAKGGPPDVEKGGEAFTNRAHPRACPDVGVLHFKVVHVFISTMKSSVPLYHLSGLYRTVHFTCGRQLISVCLRQKINVHCLGHMSDLTLHKKACPREILPVHVFVSLGLWHVSRIHTFEH 669          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|524901070|ref|XP_005106949.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like [Aplysia californica])

HSP 1 Score: 87.8113 bits (216), Expect = 2.415e-14
Identity = 108/424 (25.47%), Postives = 197/424 (46.46%), Query Frame = 0
Query:  116 LIHISRTNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVA-----RDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIATLQKALASAQQCQKKVFTAVGF---SPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQAR--QALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAK-TAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
            L  ++R   ++GRS +    +++ +  N ISR HA +    + S  I D  SLNG++IN  ++   +   LH GDM+QFG          + P      +Y++      + +++A ++         RA + A     RD+ER K     L     ++  +  K+         A+KE R   QQ+   Q  ++++  E  +A++A +++ L   ++ Q++V   +        +  +E     +    +  E E + ++LE     E   K QA     LRE++AAL+   A     L  L E K V E      ++A EE  K L+ +   Q + L++ L+     +  L+ QL++ +    + + Q  K     +EE+L     ++E EL C++C+E+ + A  L CSH+FC  C++++LK
Sbjct:   20 LFKLNREQVTIGRSGE----VTYAILSNMISRCHAMVKQQEDSSWTITDNKSLNGIYINGRRLAPMQPHLLHDGDMVQFG--------IPVSPDAPAEFIYKFYSSLKVRTEKKAKKQKCDPDVDSQRATLSASESFERDEEREKKRKSAL-----LKPPDEAKQ-------DSANKELR---QQMEVSQQEQAAKEAE-YQAKLAEMERLLMEKEKKQEEVQQQLEQERKEKENQAKEVEELRMKEAAILMEMEDKQKQLEK-EKEELRLKMQAELESNLREREAALLGQLAVQKEVL--LNEKKQVEESLQKEVEKAIEEKNKELEEQLMEQKQKLEKVLEKKEMEQKLLESQLNETKEESETAKLQALKA----REEVLCNFVDLMEMELQCSICNELYIKATSLNCSHSFCKLCINQWLK 408          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|298715106|emb|CBJ27794.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1149 bits (209), Expect = 8.120e-14
Identity = 55/143 (38.46%), Postives = 80/143 (55.94%), Query Frame = 0
Query:  112 KIPTLIHISRTNTSVGRSVKA-DVVLSHGMTQNTISRRHAEILVSPEK---STY-IQDVGSLNGVFINRVKIRKARLHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAF--EGHVGDRARIVARD 247
             +P +I +SR +T +GRS K  DV L    T+ TISR+HAEI     K    TY ++D+GS NGVF+N  K+++ RL  GD++QFGGAA +  G   G   S+ I YR+  +  G     + +R     +    +R +IV  D
Sbjct:   18 NVPEIIQLSRESTVLGRSSKTCDVTLDAAPTK-TISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSR-IRYRFEHKLAGSPNTNSKRRRGSNPDAPATNRPKIVRAD 158          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|655841113|ref|XP_008261082.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 isoform X1 [Oryctolagus cuniculus])

HSP 1 Score: 79.337 bits (194), Expect = 6.187e-12
Identity = 105/427 (24.59%), Postives = 179/427 (41.92%), Query Frame = 0
Query:  124 TSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEAR--IATLQKALASAQQCQK--------------KVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQ-----EGKHVAE-DQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
             S+GR       L   +    ISR+H  +  +PE    I D  SLNGV++NRV++   +   +H GD IQ G     +E AE     S+    + V R   K K+  ++  +         R  + D+     EG   EG  N+++   +      Q V         S    + D  L S  ++E +      +T  K +A     QK              K+  +      ++ QE   A+LN  +  ++   +     TIV  E     +  QAL+   + L   +A+  A + +L+     E +H+ + ++   ++   ++ V+ LQ   A  E L R  K+      A  R+L++ +  K   ++Q+        EE+L     VLE EL C +CSE  ++A  L C+H+FC  C+  ++K
Sbjct:   36 VSLGRGFSVTYQLVSKVCPLMISRKHCVLKQNPEGQWTIMDNKSLNGVWLNRVRLEPLKFYAIHQGDHIQLGVPLDNKENAEYEYEVSEEDWEQVVPRLALKCKQMMEKNKSLRT-----KRKFSLDE----LEGSGAEGPSNLKSKMNEMSCEPGQPVQSHENGKVASLPSKYLDPKLTSPEAQEKVSGADVYSTPPKIIAPHHNKQKGSNPSTSQSSLELFKMTMSRILKLKTELQEKQIAVLNVKRQTQKGNSK-----TIVKME-----EELQALQ---SQLCAEQAQQQARMEELEKTFQEEEQHLQDLEKEQGEEDLKQQLVQALQEHRALMEELNRSKKDFEAIIQAKNRELEQTKEEKEKVQAQK--------EEVLSQMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCIKEWMK 432          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|1187575072|ref|XP_020741427.1| (E3 ubiquitin-protein ligase RNF8 isoform X1 [Odocoileus virginianus texanus])

HSP 1 Score: 77.411 bits (189), Expect = 3.240e-11
Identity = 109/429 (25.41%), Postives = 177/429 (41.26%), Query Frame = 0
Query:  124 TSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGK----GKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESME--------ARIATLQK-----ALASAQQCQKKVFTAVG---FSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQA----EALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
             +VGR       L   +    ISR H  +  + E    I D  SLNGV++NR ++   +   +H GD IQ G     +E AE          Y   E D  +       ++DQ    E + G R +   R     + EG   EG  N+++   K     +Q V    K +  S    + D  L S                A++  L +     +  SA Q   ++F           +  QE   A+LN  +  ++   +      IV  E        Q LR+  + L   +A+  A + QL+  K + E+Q  ++    EE  + L+ + AQA     AL  EL  ++++  A+ +  DK    +T    ++ +  K   EE+L     VLE EL C +CSE  ++A  L C+H+FC  C++ ++K
Sbjct:   38 VTVGRGFGVTYQLVSKICPLMISRNHCVLKQNAEGQWTIMDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEYE--------YEVTEEDWERIYPCLSPKSDQ--MMEKNKGLRTK---RKYSLDELEGSGAEGPSNLKSKISKLSCELSQPVKSHGKGEVASPPSEYLDTKLTSFEPSGKTTGAHVNPGPAKVIELHRKKKKASNPSASQSNLELFKITMSRILMLKTQMQEKQVAVLNVKKQTKKGSSK-----KIVKME--------QELRDLQSQLCAEQAQQQARVEQLE--KTIQEEQQHLQGLEKEEGEEDLKQQLAQALQEYRALMEELNRSKKNFEAIIQAKDK-ELEQTKEEKEKVQAQK---EEVLSHMNDVLENELQCIICSEYFVEAVTLNCAHSFCSYCINEWMK 434          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|1121892580|ref|XP_019522113.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 isoform X2 [Hipposideros armiger])

HSP 1 Score: 75.485 bits (184), Expect = 1.036e-10
Identity = 109/432 (25.23%), Postives = 178/432 (41.20%), Query Frame = 0
Query:  124 TSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHS---GDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNG-----NMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIAT----------LQKA---LASAQQCQK-KVFTAVGFSPSSDYQEAITALLNAVQVGREA--------EGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
             ++GR       L   +    ISR+H  +  + +    I D  SLNGV++NRV++   +++S   GD IQ G     +E AE          Y  +E D         +RN +     D+     +D    +   + LEG G     ++++   K      Q V    K +  S    H D  L S  S+++  A + +           QKA   LAS    +  KV  +      +  QE   A+L   +  R+         E  +Q+L++++ AE+A      QA  E+   +   E +    L + QE     ED   +KQ+ A+     LQ      E L    KN   +  A  R+L++ +  K   ++Q+        EEI      VLE EL C +CSE  ++   L C+H+FC  C++ ++K
Sbjct:   38 VTIGRGFGVTYQLISKLCPLMISRKHCVLKQNTDGQWTIMDNKSLNGVWLNRVRLEPLKVYSLQKGDHIQLGMPLENKENAEYE--------YEVIEED--------QERNPYLAPKSDQMMEKNKDLRTKRKFMDELEGPGAEGPSDLKSIISKVSCEPGQPVKSHGKGEVASQPSEHLDPKLTSEPSEKTTGAHVYSGPAKAVELHKKQKASYPLASQNILELFKVIMSRILKLKAQMQEKQVAVLKVKKQSRKGNSNKIVKMEQELQDLQSLLYAEQAQ----LQARVEQLVKIFNKEQQCLQGLEKEQE-----ED---LKQQLAQ----ALQEHQDLVEELNHSKKNFEAAIQAKNRELEQIKEEKEKVQAQK--------EEISSHLNDVLENELQCIICSEYFIETVTLNCAHSFCSYCINEWMK 429          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|1121892574|ref|XP_019522112.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 isoform X1 [Hipposideros armiger])

HSP 1 Score: 75.485 bits (184), Expect = 1.111e-10
Identity = 109/432 (25.23%), Postives = 178/432 (41.20%), Query Frame = 0
Query:  124 TSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKARLHS---GDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNG-----NMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEARIAT----------LQKA---LASAQQCQK-KVFTAVGFSPSSDYQEAITALLNAVQVGREA--------EGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQAEALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
             ++GR       L   +    ISR+H  +  + +    I D  SLNGV++NRV++   +++S   GD IQ G     +E AE          Y  +E D         +RN +     D+     +D    +   + LEG G     ++++   K      Q V    K +  S    H D  L S  S+++  A + +           QKA   LAS    +  KV  +      +  QE   A+L   +  R+         E  +Q+L++++ AE+A      QA  E+   +   E +    L + QE     ED   +KQ+ A+     LQ      E L    KN   +  A  R+L++ +  K   ++Q+        EEI      VLE EL C +CSE  ++   L C+H+FC  C++ ++K
Sbjct:   38 VTIGRGFGVTYQLISKLCPLMISRKHCVLKQNTDGQWTIMDNKSLNGVWLNRVRLEPLKVYSLQKGDHIQLGMPLENKENAEYE--------YEVIEED--------QERNPYLAPKSDQMMEKNKDLRTKRKFMDELEGPGAEGPSDLKSIISKVSCEPGQPVKSHGKGEVASQPSEHLDPKLTSEPSEKTTGAHVYSGPAKAVELHKKQKASYPLASQNILELFKVIMSRILKLKAQMQEKQVAVLKVKKQSRKGNSNKIVKMEQELQDLQSLLYAEQAQ----LQARVEQLVKIFNKEQQCLQGLEKEQE-----ED---LKQQLAQ----ALQEHQDLVEELNHSKKNFEAAIQAKNRELEQIKEEKEKVQAQK--------EEISSHLNDVLENELQCIICSEYFIETVTLNCAHSFCSYCINEWMK 429          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|521030607|gb|EPQ12393.1| (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Myotis brandtii])

HSP 1 Score: 75.8702 bits (185), Expect = 1.805e-10
Identity = 99/418 (23.68%), Postives = 176/418 (42.11%), Query Frame = 0
Query:  124 TSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGKGKERADQRN--AFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEAR--IATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLN-AVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQA----EALKRELKNTRRSKTAL----QRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
             ++GR       L   +    ISR H  +  + E    I D  SLNGV++NRV++       LH+GD +Q G     +E AE          Y   E D  K       +N      + G R +   R     + EG   EG  +++    K      Q +    K +  S    H++  + S    E++      +   K LA     +K    +V  S    ++  ++ +L    Q+  +    + E +     +     Q  Q L++  + L   +A+ +A + QL+  K   E+Q  ++    E+  + L+ + AQA    +AL  EL  +++   A+     ++L++ +  K   ++Q+        EE+L     VLE EL C +CSE  ++A  L C+H+FC  C++ ++K
Sbjct:   29 VTLGRGFGVTYQLVSKLCPLMISRNHCVLKQNTEGQWTIMDNKSLNGVWLNRVRLEPLEVYSLHTGDRVQLGVPLENKESAEYE--------YEVTEEDWEKMCPYLAPKNDQILGKNKGLRTK---RKCSLDELEGPEAEGPSHLKFKMNKVSSEPGQPLRSRGKGELASGPSEHWEPQVTSLEPSENVSGAHVFSGPTKVLALHHHKRKASNLSVSQSRLELFKVTMSRILKLKTQMQEKQVAVLNEKKQTQKGDSTNIVQMEQELQDLQSQLCAEQAQQEARVEQLE--KTFEEEQQYLQGLEKEQGEEDLKQQLAQALQEHQALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQK--------EEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK 425          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|1187575076|ref|XP_020741429.1| (E3 ubiquitin-protein ligase RNF8 isoform X3 [Odocoileus virginianus texanus])

HSP 1 Score: 74.3294 bits (181), Expect = 1.890e-10
Identity = 105/408 (25.74%), Postives = 171/408 (41.91%), Query Frame = 0
Query:  145 ISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGK----GKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESME--------ARIATLQK-----ALASAQQCQKKVFTAVG---FSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKEQARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQA----EALKRELKNTRRSKTALQRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
            ISR H  +  + E    I D  SLNGV++NR ++   +   +H GD IQ G     +E AE          Y   E D  +       ++DQ    E + G R +   R     + EG   EG  N+++   K     +Q V    K +  S    + D  L S                A++  L +     +  SA Q   ++F           +  QE   A+LN  +  ++   +      IV  E        Q LR+  + L   +A+  A + QL+  K + E+Q  ++    EE  + L+ + AQA     AL  EL  ++++  A+ +  DK    +T    ++ +  K   EE+L     VLE EL C +CSE  ++A  L C+H+FC  C++ ++K
Sbjct:    2 ISRNHCVLKQNAEGQWTIMDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEYE--------YEVTEEDWERIYPCLSPKSDQ--MMEKNKGLRTK---RKYSLDELEGSGAEGPSNLKSKISKLSCELSQPVKSHGKGEVASPPSEYLDTKLTSFEPSGKTTGAHVNPGPAKVIELHRKKKKASNPSASQSNLELFKITMSRILMLKTQMQEKQVAVLNVKKQTKKGSSK-----KIVKME--------QELRDLQSQLCAEQAQQQARVEQLE--KTIQEEQQHLQGLEKEEGEEDLKQQLAQALQEYRALMEELNRSKKNFEAIIQAKDK-ELEQTKEEKEKVQAQK---EEVLSHMNDVLENELQCIICSEYFVEAVTLNCAHSFCSYCINEWMK 377          
BLAST of EWM25548.1 vs. NCBI_GenBank
Match: gi|987970010|ref|XP_015427370.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 [Myotis davidii])

HSP 1 Score: 74.7146 bits (182), Expect = 2.308e-10
Identity = 101/426 (23.71%), Postives = 179/426 (42.02%), Query Frame = 0
Query:  122 TNTSVGRSVKADVVLSHGMTQNTISRRHAEILVSPEKSTYIQDVGSLNGVFINRVKIRKAR---LHSGDMIQFGGAAGLQEGAELGPVCSKAIMYRYVERDVGK-GKERADQRNAFEGHVGDRARIVARDQERGKHEGEMLEGNGNMRAHNGKKRRRTAQGVHVASKEDRESSQQLHFDQNLESSRSKESMEAR--IATLQKALASAQQCQKKVFTAVGFSPSSDYQEAITALLNAVQVGREAEGRVQELETIVGAERAAKE--------QARQALREKDAALMVAEARVDAALAQLQEGKHVAEDQSTVKQRAAEEAVKMLQAKTAQA----EALKRELKNTRRSKTAL----QRQLDKCRAVKTSGRSQQAKGDKGGQEEIL----QVLEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK 521
            T  ++GR       L   +    ISR H  +  + E    I D  SLNGV++NRV++       LH+GD +Q G     +E AE          Y   E D  K     A   +   G   ++     R     + EG   EG  +++    K      Q +    K +       H +  L S    E++      +   K LA     +K    +V  S    ++  ++ +L       + + ++QE +  V  E+   +        Q  Q L++  + L   +A+ +A + QL+  K   E+Q +++    E+  + L+ + AQA    +AL  EL  +++   A+     ++L++ +  K   ++Q+        EE+L     VLE EL C +CSE  ++A  L C+H+FC  C++ ++K
Sbjct:   28 TQVTLGRGFGVTYQLVSKLCPLMISRNHCVLKQNTEGQWTIMDNKSLNGVWLNRVRLEPLEVYTLHAGDRVQLGVPLENKESAEYE--------YEVTEEDWEKMCPYLAPMNDQILGK--NKGLRTKRKCSLDELEGPEAEGPSHLKFKMNKVSSEPGQPLRSCGKGELARGPSEHLEPQLTSPEPSENVSGAHAFSGPTKVLALHHHKRKASNPSVSQSRLELFKVTMSRIL-------KLKTQMQEKQVAVLNEKKQTQKGDSKNIVQMEQELQDLQSRLCAEQAQQEARVEQLE--KTFEEEQQSLQGLEKEQGEEDLKQQLAQALQEHQALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQK--------EEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK 426          
The following BLAST results are available for this feature:
BLAST of EWM25548.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107319|gb|EWM25548.1|0.000e+0100.00fha domain-containing protein [Nannochloropsis gad... [more]
gi|524901070|ref|XP_005106949.1|2.415e-1425.47PREDICTED: E3 ubiquitin-protein ligase RNF8-like [... [more]
gi|298715106|emb|CBJ27794.1|8.120e-1438.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|655841113|ref|XP_008261082.1|6.187e-1224.59PREDICTED: E3 ubiquitin-protein ligase RNF8 isofor... [more]
gi|1187575072|ref|XP_020741427.1|3.240e-1125.41E3 ubiquitin-protein ligase RNF8 isoform X1 [Odoco... [more]
gi|1121892580|ref|XP_019522113.1|1.036e-1025.23PREDICTED: E3 ubiquitin-protein ligase RNF8 isofor... [more]
gi|1121892574|ref|XP_019522112.1|1.111e-1025.23PREDICTED: E3 ubiquitin-protein ligase RNF8 isofor... [more]
gi|521030607|gb|EPQ12393.1|1.805e-1023.68Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
gi|1187575076|ref|XP_020741429.1|1.890e-1025.74E3 ubiquitin-protein ligase RNF8 isoform X3 [Odoco... [more]
gi|987970010|ref|XP_015427370.1|2.308e-1023.71PREDICTED: E3 ubiquitin-protein ligase RNF8 [Myoti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5137rna5137Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications