EWM25565.1, cds5108 (CDS) Nannochloropsis gaditana

Overview
NameEWM25565.1
Unique Namecds5108
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:170093..170249 +
Alignment locationCM002465.1:170491..171035 +
Alignment locationCM002465.1:171257..171555 +
Alignment locationCM002465.1:171851..172325 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25565.1
ProductRegulator of chromosome condensation/beta-lactamase-inhibitor protein II
Orig transcript idgnl|cribi|Naga_100664g1.4023.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:170093..170249 +
CM002465.1supercontigCM002465.1:170491..171035 +
CM002465.1supercontigCM002465.1:171257..171555 +
CM002465.1supercontigCM002465.1:171851..172325 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009091RCC1/BLIP-II
IPR000408Reg_chr_condens
Homology
[Close]
BLAST of EWM25565.1 vs. NCBI_GenBank
Match: gi|585107341|gb|EWM25565.1| (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 0 
Query:    1 MHPMKLANLLTFPRQTISDPMLSLLRTTRLTPRTVFSITRGSRVYHRRGITRAKSCLSPKCMHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY 491
            MHPMKLANLLTFPRQTISDPMLSLLRTTRLTPRTVFSITRGSRVYHRRGITRAKSCLSPKCMHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY
Sbjct:    1 MHPMKLANLLTFPRQTISDPMLSLLRTTRLTPRTVFSITRGSRVYHRRGITRAKSCLSPKCMHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY 491
[Close]
BLAST of EWM25565.1 vs. NCBI_GenBank
Match: gi|585107342|gb|EWM25566.1| (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II [Nannochloropsis gaditana])

HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0 
Query:   62 MHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY 491
            MHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY
Sbjct:    1 MHIPSTSSYSSPRDGFGALVILLVVAISLPSGTTTSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSPTPLPTTRHRPCVKHKQQYRAYVWGDARWLQPPSSTLSASLTTTPLSLPFPDVRSLAFGPSFAAILRRDGTVHWKSARSPSFLPLAMPVGEHADRIVCTRDTIYALTTNGRVFFWSMPGLLRSLRTASTASSPPSSSTPGLPLEFASLAPRPTTDAPPSPPSLPPSLPPSPLPSFLSSSHVVITGIAAGHDHVLMTTRDGTVLGVGSNAQGQLGFPATNAAFTEPREIPFFLPPSLPPSLRPTRVEAGHAHSFVVCEREGGREGGREGEKESVIYAFGCDRWLQLGLGRCLESDSHRNPLSPKLFSVILPCKLDFPISVHGRCTQSQCLSSLPFPPLPSFPSLPPSLPPSLPPSLSSSY 430
The following BLAST results are available for this feature:
BLAST of EWM25565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107341|gb|EWM25565.1|0.000e+0100.00Regulator of chromosome condensation/beta-lactamas... [more]
gi|585107342|gb|EWM25566.1|0.000e+0100.00Regulator of chromosome condensation/beta-lactamas... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5120rna5120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications