EWM25568.1, cds5105 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|585107345|gb|EWM25568.1| (nadh dehydrogenase, partial [Nannochloropsis gaditana]) HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
Query: 1 PPSLPPSPVFHLLSSPGKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
PPSLPPSPVFHLLSSPGKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH
Sbjct: 1 PPSLPPSPVFHLLSSPGKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|676379743|ref|XP_009033150.1| (hypothetical protein AURANDRAFT_20714 [Aureococcus anophagefferens] >gi|323456187|gb|EGB12054.1| hypothetical protein AURANDRAFT_20714 [Aureococcus anophagefferens]) HSP 1 Score: 236.884 bits (603), Expect = 1.172e-72 Identity = 123/258 (47.67%), Postives = 170/258 (65.89%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFG-VIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GKYY+T+++VP + A G SNVN+S EE++++A +A AK+ G + F+HVSA+ AD SP W TK GE A+ FP ATIVRP LFG EDRLLNWFA A G ++PL + G ++LQP YA DV + +I DP Y G+ EL G +T REL +FTFD+T QK +V +P + + AA ++ P+P+ T D+ L + DV++ P + +TF D I PTP+EK+AF+YL+RYR +GGHF A+GYH
Sbjct: 137 GKYYETRNVVPTKRADGAYSNVNYSYEEVNVDAARAIARQAKAAGAAGFVHVSAMAADAKSPSEWARTKAAGEAAVLEEFPEATIVRPCTLFGWEDRLLNWFAGIAGMPGALVPLVDDGASVLQPVYAVDVAKVINQITLDPTKYAGQVVELGGPAEYTRRELAEFTFDVTKQKATLVPVPAQLADFAAGFMNLAPSPMWTRDEVALETVDVVVPPGTPNLTFADFGIAPTPIEKIAFSYLHRYR-EGGHFIIAKGYH 393
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|298710072|emb|CBJ31788.1| (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus]) HSP 1 Score: 221.09 bits (562), Expect = 9.235e-67 Identity = 121/267 (45.32%), Postives = 163/267 (61.05%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPE--DYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMA-----AFG--LSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIK-PTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y+TKHL R G ++ VN S + ++++ LA AK+ GV +F+HVSAL AD DSP RW TK GE A+K FP ATIVRP +LFG DRLL W A A G +PL N G+ L+QP A +V ++ II++PE DY GK ELAG F+WRE+ D D T+ + RV D V EM+ +G L QLPNPL T D+A MS DV+ +P+ A+T +D +I P +E+ A + + R+RT HF + +GYH
Sbjct: 116 GKHYETKHLCFTRKEDGAINRVNSSFKNVNVDVAGMLARAAKAQGVKNFVHVSALAADPDSPSRWAQTKFAGELAVKEAFPEATIVRPAKLFGNNDRLLTWIALMATRMGRVPLVNDGDNLIQPIDARNVAQVLMAIIDNPENLDYRGKLVELAGPGEFSWREVADLVLDTTH-RARVTD----VEEMSMLFARGYGMLLEQLPNPLFTEDEALAMSVDVVQKPNPDALTLEDFNITDPFKMEECAISIVRRFRTV-QHFGFVKGYH 376
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|970632046|gb|KUF78455.1| (NADH dehydrogenase 1 alpha subcomplex subunit 9 [Phytophthora nicotianae]) HSP 1 Score: 202.986 bits (515), Expect = 5.078e-60 Identity = 106/257 (41.25%), Postives = 157/257 (61.09%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK GV +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N S+G IP+ + G+A++QP + +DV A+ I +D E +GKTFE G+ FT++EL D+ FDIT Q R+V+LPL V + + Q P+P T D A +S + I +S ++L ++PT LEK A NY+ ++ GGHF GYH
Sbjct: 101 GKHYQTKHMLPWW--------INYTYDDVHVDVARTIAEVAKEAGVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWMG-NRLSYGGIPVVDNGDAVIQPVFVNDVAKAIYHITQD-ETIQGKTFEFVGDEEFTYKELADYVFDITKQNSRLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLNEI--KTSDLPGLRELDVEPTKLEKEAPNYMIKF-NPGGHFQEVSGYH 344
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|695389175|ref|XP_009519370.1| (hypothetical protein PHYSODRAFT_284843 [Phytophthora sojae] >gi|348684267|gb|EGZ24082.1| hypothetical protein PHYSODRAFT_284843 [Phytophthora sojae]) HSP 1 Score: 202.601 bits (514), Expect = 7.648e-60 Identity = 104/257 (40.47%), Postives = 158/257 (61.48%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK GV +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N ++G +P+ N G+A++QP + +DV A+ I +DP +GKTFEL G+ FT++EL D+ FDIT + P +V+LPL V + + Q P+P T D A +S + + +S ++L ++PT LEK A N+L ++ GGHF GYH
Sbjct: 101 GKHYQTKHILPWW--------INYTYDDVHVDVARTIAEVAKEAGVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWIG-NRLNYGGVPVVNNGDAVIQPVFVNDVAKAIYHITQDPT-IQGKTFELVGDEEFTYKELADYVFDITKRNPSLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLNEV--KTSDLPGLRELDVEPTKLEKEAPNFLLKFNP-GGHFQEVSGYH 344
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|567964585|gb|ETK90070.1| (hypothetical protein L915_06079 [Phytophthora parasitica]) HSP 1 Score: 202.986 bits (515), Expect = 9.108e-60 Identity = 106/257 (41.25%), Postives = 157/257 (61.09%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK GV +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N S+G IP+ + G+A++QP + +DV A+ I +D E +GKTFE G+ FT++EL D+ FDIT Q R+V+LPL V + + Q P+P T D A +S + I +S ++L ++PT LEK A NY+ ++ GGHF GYH
Sbjct: 129 GKHYQTKHMLPWW--------INYTYDDVHVDVARTIAEVAKEAGVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWMG-NRLSYGGIPVVDNGDAVIQPVFVNDVAKAIYHITQD-ETIQGKTFEFVGDEEFTYKELADYVFDITKQNSRLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLNEI--KTSDLPGLRELDVEPTKLEKEAPNYMIKF-NPGGHFQEVSGYH 372
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|566027276|gb|ETI50187.1| (hypothetical protein F443_06198 [Phytophthora parasitica P1569] >gi|570954694|gb|ETP19951.1| hypothetical protein F441_06208 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 202.216 bits (513), Expect = 1.954e-59 Identity = 106/257 (41.25%), Postives = 156/257 (60.70%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK GV +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N S+G IP+ + G+A++QP + +DV A+ I +D E +GKTFE G+ FT++EL D+ FDIT Q R+V+LPL V + + Q P+P T D A +S I +S ++L ++PT LEK A NY+ ++ GGHF GYH
Sbjct: 129 GKHYQTKHMLPWW--------INYTYDDVHVDVARTIAEVAKEAGVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWMG-NRLSYGGIPVVDNGDAVIQPVFVNDVAKAIYHITQD-ETIQGKTFEFVGDEEFTYKELADYVFDITKQNSRLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLSEI--KTSDLPGLRELDVEPTKLEKEAPNYMIKF-NPGGHFQEVSGYH 372
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|567993286|gb|ETL43467.1| (hypothetical protein L916_06017 [Phytophthora parasitica] >gi|568022586|gb|ETL96650.1| hypothetical protein L917_05895 [Phytophthora parasitica] >gi|568052938|gb|ETM49795.1| hypothetical protein L914_06019 [Phytophthora parasitica] >gi|570330962|gb|ETO78910.1| hypothetical protein F444_06264 [Phytophthora parasitica P1976] >gi|570989745|gb|ETP47894.1| hypothetical protein F442_06244 [Phytophthora parasitica P10297]) HSP 1 Score: 202.601 bits (514), Expect = 2.021e-59 Identity = 106/257 (41.25%), Postives = 156/257 (60.70%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK GV +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N S+G IP+ + G+A++QP + +DV A+ I +D E +GKTFE G+ FT++EL D+ FDIT Q R+V+LPL V + + Q P+P T D A +S I +S ++L ++PT LEK A NY+ ++ GGHF GYH
Sbjct: 136 GKHYQTKHMLPWW--------INYTYDDVHVDVARTIAEVAKEAGVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWMG-NRLSYGGIPVVDNGDAVIQPVFVNDVAKAIYHITQD-ETIQGKTFEFVGDEEFTYKELADYVFDITKQNSRLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLSEI--KTSDLPGLRELDVEPTKLEKEAPNYMIKF-NPGGHFQEVSGYH 379
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|397614628|gb|EJK62913.1| (hypothetical protein THAOC_16455 [Thalassiosira oceanica]) HSP 1 Score: 201.83 bits (512), Expect = 5.152e-59 Identity = 114/271 (42.07%), Postives = 158/271 (58.30%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNF----SLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSA----------MTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GKYYDTK L + + K +N+ S+ E ++E PAK+AEL + V + +HVS+ A+ +S W K +GE+ + +P ATIVRP +LFG EDRLLNWFA A F +PL +GG+AL QP + DV A+ +I++ PE +EG+ + G ++++ EL FT DIT Q P +VDLP V + A L NP+LT D LMS D + E S T +DL + TP+EK+AF YL+R+R GGHF GYH
Sbjct: 129 GKYYDTKAL----EDTNKFPYLNYKVSTSIHEANVEVPAKIAELCTDMQVDNLIHVSSAAANPESSSEWARFKYEGEQEVLKAYPWATIVRPTQLFGHEDRLLNWFANFADRFPFVPLVDGGHALTQPVWVDDVARAINRIVDQPEMFEGRRLDCFGPQDYSYAELAKFTNDITGQDPNLVDLPSDVMKYPARILQFEGNPMLTPDLVNLMSEDYLPELSEEGYANQLQKDKIFTMKDLGVTATPIEKIAFKYLHRFRK-GGHFILQSGYH 394
BLAST of EWM25568.1 vs. NCBI_GenBank
Match: gi|675165509|ref|XP_008891639.1| (hypothetical protein PPTG_02328 [Phytophthora parasitica INRA-310] >gi|568107751|gb|ETN22375.1| hypothetical protein PPTG_02328 [Phytophthora parasitica INRA-310]) HSP 1 Score: 201.06 bits (510), Expect = 7.911e-59 Identity = 105/257 (40.86%), Postives = 156/257 (60.70%), Query Frame = 0
Query: 17 GKYYDTKHLVPHRDASGKLSNVNFSLEEIHIEAPAKLAELAKSVGVSHFLHVSALGADKDSPVRWLATKGQGEEALKSVFPRATIVRPGRLFGPEDRLLNWFAQNAASFGVIPLFNGGNALLQPTYASDVVDAMVKIIEDPEDYEGKTFELAGEHNFTWRELMDFTFDITYQKPRVVDLPLAVGEMAAFGLSQLPNPLLTIDDAKLMSTDVILEPSSSAMTFQDLHIKPTPLEKVAFNYLYRYRTDGGHFPYAEGYH 273
GK+Y TKH++P +N++ +++H++ +AE+AK V +HVS+L A +SP W A+K +GE A++ FP A IVRP +FGPEDRLL W N S+G IP+ + G+A++QP + +DV A+ I +D E +GKTFE G+ FT++EL D+ FDIT Q R+V+LPL V + + Q P+P T D A +S + I +S ++L ++PT LEK A NY+ ++ GGHF GYH
Sbjct: 136 GKHYQTKHMLPWW--------INYTYDDVHVDVARTIAEVAKEASVPRMVHVSSLLAQPNSPSEWAASKFRGEVAVRKAFPEANIVRPSNMFGPEDRLLVWMG-NRLSYGGIPVVDNGDAVIQPVFVNDVAKAIYHITQD-ETIQGKTFEFVGDEEFTYKELADYVFDITKQNSRLVNLPLPVAQAIGYFCEQFPDPKFTRDWATRLSLNEI--KTSDLPGLRELDVEPTKLEKEAPNYMIKF-NPGGHFQEVSGYH 379 The following BLAST results are available for this feature:
BLAST of EWM25568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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