EWM25571.1, cds5104 (CDS) Nannochloropsis gaditana

Overview
NameEWM25571.1
Unique Namecds5104
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:162840..163773 +
Alignment locationCM002465.1:163849..163973 +
Alignment locationCM002465.1:164098..164158 +
Alignment locationCM002465.1:164294..164470 +
Alignment locationCM002465.1:164652..164792 +
Alignment locationCM002465.1:164936..165192 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25571.1
Productwsc domain containing 1
Orig transcript idgnl|cribi|Naga_100463g4.3052.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:162840..163773 +
CM002465.1supercontigCM002465.1:163849..163973 +
CM002465.1supercontigCM002465.1:164098..164158 +
CM002465.1supercontigCM002465.1:164294..164470 +
CM002465.1supercontigCM002465.1:164652..164792 +
CM002465.1supercontigCM002465.1:164936..165192 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|585107348|gb|EWM25571.1| (wsc domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0
Identity = 564/564 (100.00%), Postives = 564/564 (100.00%), Query Frame = 0
Query:    1 MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL 564
            MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL
Sbjct:    1 MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL 564          
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|585106012|gb|EWM24512.1| (isoform b [Nannochloropsis gaditana])

HSP 1 Score: 177.948 bits (450), Expect = 1.293e-45
Identity = 112/286 (39.16%), Postives = 155/286 (54.20%), Query Frame = 0
Query:  284 EECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLL-AKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFT--VTGRCNDWGGIK-AFRRFILLMRNPFDAIWSEY-RRTATEAHFFLSD--DFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDM--RMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIF---GADVKEFGYTLPNGIT 557
            EEC   Y  RRFLD N    P +LYS+PGSGNT+TRLLID +TGV++G +L    P       GQ HC   V  +KAHP  F P +L    +   C   GG++  F RFILL R+P+ AIWSEY RR    +H   +D   FD E F  VA+   ++ Y   + +F+ ++  LP  +I S+ YED+   D+  R  +L +I  F+G        +  R   CAF LA D    RR  +  K  +++  V  ++ YTPE+AC MW++    GA     GY+ P G+T
Sbjct:  143 EECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMV-FAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLG---ATKEAKDSRRCSCAFTLA-DRPDTRRTREEDK--EVRKAVTREEAYTPELACDMWELLEEGGAG--RLGYSPPPGVT 419          
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|167516342|ref|XP_001742512.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779136|gb|EDQ92750.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 90.8929 bits (224), Expect = 1.213e-15
Identity = 72/264 (27.27%), Postives = 125/264 (47.35%), Query Frame = 0
Query:  304 PPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLF--TVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEA------------HFFLSDDFDLEA-FATVAISKMSRLYKDMIRSFKTVRKT--LPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGY 550
            PP+LYS PGSGNT+ R L+D +TG +SG+L       +    G+GHC+  VSV+KAHPN    + L   T T R N       F  F +++R+ + A+++E++R   E             H       D +A F  +    + R  K+ + ++    +   LP      + YE +++   R   L  +  F+    G S  ++ R L+CAF   E    G+      +++K +  ++ + ++TP + C++W +     +  GY
Sbjct:  280 PPVLYSAPGSGNTFVRTLLDAATGYYSGSLYLD-ATLIDSLPGEGHCNH-VSVVKAHPNMHSVDDLLGQTPTLRRN----CGPFDAFAIVIRDFYHAVFAEFQRRYVEVVQASNPRLALNHHVSTLQWKDWDADFRFIWQDYVMRKAKESVATWAQYERLRQLPNSTTLLVSYERLVNSAERASELRRLVSFVV---GESAVDESR-LECAF---ESSASGQ-----VRRVKQESDLNLQGVFTPRLVCRVWQLIQPWAEPLGY 525          
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|514691974|ref|XP_004993560.1| (hypothetical protein PTSG_05694 [Salpingoeca rosetta] >gi|326428427|gb|EGD73997.1| hypothetical protein PTSG_05694 [Salpingoeca rosetta])

HSP 1 Score: 80.4925 bits (197), Expect = 1.216e-12
Identity = 72/287 (25.09%), Postives = 124/287 (43.21%), Query Frame = 0
Query:  304 PPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPN--HFPPE---RLFTVT-------GRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSR-------LYKDMIRSFKTVRKT--LPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLND-----GPSPKEKHRHLQCAFILAEDIGGGR-RGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQ 563
            PP+L + PGSGNTW R+L++  TG  S ++      K     G+  C     V+K+H +   + PE   +LF +          C +   ++ F   I ++R+PF A  +E  R  T  H   +       F  +  S ++R       ++   ++ ++ + +   +  +N   + +EDM    ++   L  +  F+   D     GP  K     L C F LA+D+   R  G D         +V  +++ TPEI C+MW +       F Y  P GIT ++  +
Sbjct:  129 PPLLLTLPGSGNTWFRMLLEYGTGFFSSSVYNDFKLK-EVMPGELRCDNTTIVVKSHMHLGSYDPEVYNKLFKMQPGELAHGYPCRE---LRPFDSVIGIIRDPFHAALAEATRQLTGGH---ASGISRSRFHNMPQSDIARRLVTQCEMWAHYMKEYQRLLRDGFVVARNFILIRFEDMTSPLLKHDTLGRLLRFVLGPDMESPLGPLTKPT---LDCIFSLADDVHVHRTHGPD---------VVSAEEVLTPEIVCKMWAVVRQFAAAFDYRPPFGITCDNAGE 396          
The following BLAST results are available for this feature:
BLAST of EWM25571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107348|gb|EWM25571.1|0.000e+0100.00wsc domain containing 1 [Nannochloropsis gaditana][more]
gi|585106012|gb|EWM24512.1|1.293e-4539.16isoform b [Nannochloropsis gaditana][more]
gi|167516342|ref|XP_001742512.1|1.213e-1527.27hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|514691974|ref|XP_004993560.1|1.216e-1225.09hypothetical protein PTSG_05694 [Salpingoeca roset... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5116rna5116Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications