EWM25571.1, cds5104 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|585107348|gb|EWM25571.1| (wsc domain containing 1 [Nannochloropsis gaditana]) HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0 Identity = 564/564 (100.00%), Postives = 564/564 (100.00%), Query Frame = 0
Query: 1 MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL 564
MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL
Sbjct: 1 MGLPDHKDKPRFRFAKKTGRILIGTTIICVGLAFLYKQRVQPSFKRTSLVTAGNVVVEPRNELKSSSDQRAESALPSSTLIPGNHLTTTPSPTQGEKTATDLPLEDVIDAQKNATQPPPVNPRGTDVEEQRGGKKESPKEEDTKGRGGDGEHPPKILETSGEGLEEEWEGEFEQDDDEEEDFLDEEYADDEGVEEEEEKEEGAVAEKKEEVAEKAIEPEKERKDDEGKAREKDKKETSGEQHAAEASKLASGGEGTNATLPTTPAKGIGKKEEHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFTVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQL 564
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|585106012|gb|EWM24512.1| (isoform b [Nannochloropsis gaditana]) HSP 1 Score: 177.948 bits (450), Expect = 1.293e-45 Identity = 112/286 (39.16%), Postives = 155/286 (54.20%), Query Frame = 0
Query: 284 EECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLL-AKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLFT--VTGRCNDWGGIK-AFRRFILLMRNPFDAIWSEY-RRTATEAHFFLSD--DFDLEAFATVAISKMSRLYKDMIRSFKTVRKTLPEKNIYSMYYEDMLDQDM--RMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIF---GADVKEFGYTLPNGIT 557
EEC Y RRFLD N P +LYS+PGSGNT+TRLLID +TGV++G +L P GQ HC V +KAHP F P +L + C GG++ F RFILL R+P+ AIWSEY RR +H +D FD E F VA+ ++ Y + +F+ ++ LP +I S+ YED+ D+ R +L +I F+G + R CAF LA D RR + K +++ V ++ YTPE+AC MW++ GA GY+ P G+T
Sbjct: 143 EECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILGVNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPDNCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAMV-FAQEYVTTLENFEFLKTKLPRHDILSVKYEDLTTTDVLTREAVLHDIVTFLG---ATKEAKDSRRCSCAFTLA-DRPDTRRTREEDK--EVRKAVTREEAYTPELACDMWELLEEGGAG--RLGYSPPPGVT 419
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|167516342|ref|XP_001742512.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779136|gb|EDQ92750.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 90.8929 bits (224), Expect = 1.213e-15 Identity = 72/264 (27.27%), Postives = 125/264 (47.35%), Query Frame = 0
Query: 304 PPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPNHFPPERLF--TVTGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEA------------HFFLSDDFDLEA-FATVAISKMSRLYKDMIRSFKTVRKT--LPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLNDGPSPKEKHRHLQCAFILAEDIGGGRRGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGY 550
PP+LYS PGSGNT+ R L+D +TG +SG+L + G+GHC+ VSV+KAHPN + L T T R N F F +++R+ + A+++E++R E H D +A F + + R K+ + ++ + LP + YE +++ R L + F+ G S ++ R L+CAF E G+ +++K + ++ + ++TP + C++W + + GY
Sbjct: 280 PPVLYSAPGSGNTFVRTLLDAATGYYSGSLYLD-ATLIDSLPGEGHCNH-VSVVKAHPNMHSVDDLLGQTPTLRRN----CGPFDAFAIVIRDFYHAVFAEFQRRYVEVVQASNPRLALNHHVSTLQWKDWDADFRFIWQDYVMRKAKESVATWAQYERLRQLPNSTTLLVSYERLVNSAERASELRRLVSFVV---GESAVDESR-LECAF---ESSASGQ-----VRRVKQESDLNLQGVFTPRLVCRVWQLIQPWAEPLGY 525
BLAST of EWM25571.1 vs. NCBI_GenBank
Match: gi|514691974|ref|XP_004993560.1| (hypothetical protein PTSG_05694 [Salpingoeca rosetta] >gi|326428427|gb|EGD73997.1| hypothetical protein PTSG_05694 [Salpingoeca rosetta]) HSP 1 Score: 80.4925 bits (197), Expect = 1.216e-12 Identity = 72/287 (25.09%), Postives = 124/287 (43.21%), Query Frame = 0
Query: 304 PPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGKVSKFEGQGHCSKRVSVLKAHPN--HFPPE---RLFTVT-------GRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMSR-------LYKDMIRSFKTVRKT--LPEKNIYSMYYEDMLDQDMRMKILSNITDFIGLND-----GPSPKEKHRHLQCAFILAEDIGGGR-RGSDLAKKIKIKHIVDTKDIYTPEIACQMWDIFGADVKEFGYTLPNGITEEDCAQ 563
PP+L + PGSGNTW R+L++ TG S ++ K G+ C V+K+H + + PE +LF + C + ++ F I ++R+PF A +E R T H + F + S ++R ++ ++ ++ + + + +N + +EDM ++ L + F+ D GP K L C F LA+D+ R G D +V +++ TPEI C+MW + F Y P GIT ++ +
Sbjct: 129 PPLLLTLPGSGNTWFRMLLEYGTGFFSSSVYNDFKLK-EVMPGELRCDNTTIVVKSHMHLGSYDPEVYNKLFKMQPGELAHGYPCRE---LRPFDSVIGIIRDPFHAALAEATRQLTGGH---ASGISRSRFHNMPQSDIARRLVTQCEMWAHYMKEYQRLLRDGFVVARNFILIRFEDMTSPLLKHDTLGRLLRFVLGPDMESPLGPLTKPT---LDCIFSLADDVHVHRTHGPD---------VVSAEEVLTPEIVCKMWAVVRQFAAAFDYRPPFGITCDNAGE 396 The following BLAST results are available for this feature:
BLAST of EWM25571.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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