EWM25601.1, cds5072 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|585107410|gb|EWM25601.1| (histone-lysine n- h3 lysine-36 and h4 lysine-20 specific [Nannochloropsis gaditana]) HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query: 1 MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI 246
MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI
Sbjct: 1 MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI 246
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|325188025|emb|CCA22568.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 77.411 bits (189), Expect = 1.053e-12 Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0
Query: 9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
+DGG+++ CD ++K + C KVYHE CL YTV NVRW CPRHLC +CGE R CR+C +SYC +HV
Sbjct: 306 RDGGDVILCDWKGKNK-LPCPKVYHEECLGYTVP--KNVRWVCPRHLCHLCGE-MARFLCRFCVSSYCDKHVT 374
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|1173961254|gb|OQS07302.1| (hypothetical protein THRCLA_12202 [Thraustotheca clavata]) HSP 1 Score: 70.4774 bits (171), Expect = 2.986e-10 Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
+DGG L+ECD+ + K C KVYH+ Y + +W+CPRH C VC K HCCR+C SYC+EH+P
Sbjct: 417 KDGGELIECDYTSKSKGARCPKVYHK---GYPIPDKG--KWHCPRHTCFVC-IKPSTHCCRFCVTSYCEEHIP 483
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|669156020|ref|XP_008613572.1| (hypothetical protein SDRG_09417 [Saprolegnia diclina VS20] >gi|530734644|gb|EQC32886.1| hypothetical protein SDRG_09417 [Saprolegnia diclina VS20]) HSP 1 Score: 69.707 bits (169), Expect = 4.272e-10 Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 0
Query: 9 QDGGNLLECDHDLRDK-SIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVD 131
+DGG L+ECDH + K ++ C KVYH CL + W CPRH C C HCCR+C +YC++HVP A L P I+C C+ + A R L S F S
Sbjct: 405 KDGGVLIECDHVAKHKGAVRCPKVYHPDCLGSAIPDKG--LWRCPRHFCFKCSAPTT-HCCRFCVAAYCEKHVPRTAV----VLGPAPADLPNATYITCRPCIEQLDEAAARGLLPSAFYSATS 521
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|301128022|ref|XP_002909971.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096040|gb|EEY54092.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 69.3218 bits (168), Expect = 5.189e-10 Identity = 41/103 (39.81%), Postives = 50/103 (48.54%), Query Frame = 0
Query: 9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCV 110
+DGGN++ECD L C KVYHE CL Y V W CPRH C CG H CR+C SYCQ+H+P + K S + + CP C
Sbjct: 346 KDGGNVIECDWKGLNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCGII-AHHSCRFCVTSYCQDHLPKEVKRLGRATKDIPTSTY----VMCPRCT 441
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|1173947993|gb|OQR96158.1| (hypothetical protein ACHHYP_16919 [Achlya hypogyna]) HSP 1 Score: 68.5514 bits (166), Expect = 1.076e-9 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0
Query: 9 QDGGNLLECDHDLRDKS-IHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
+DGG L+ECDH + K + C KVYH+ CLN+ + W CPRH C C CCR+C +YC +HVP
Sbjct: 411 KDGGVLIECDHTTKSKGGVRCPKVYHKDCLNHPIPDKGT--WRCPRHFCFKCSAAS-SVCCRFCAMAYCDKHVP 481
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|566008832|gb|ETI31743.1| (hypothetical protein F443_21333 [Phytophthora parasitica P1569] >gi|567946308|gb|ETK72119.1| hypothetical protein L915_20735 [Phytophthora parasitica] >gi|567974975|gb|ETL25549.1| hypothetical protein L916_20618 [Phytophthora parasitica] >gi|568004439|gb|ETL78763.1| hypothetical protein L917_20480 [Phytophthora parasitica] >gi|568034362|gb|ETM32035.1| hypothetical protein L914_20488 [Phytophthora parasitica] >gi|570312507|gb|ETO60455.1| hypothetical protein F444_21356 [Phytophthora parasitica P1976] >gi|570936286|gb|ETP01543.1| hypothetical protein F441_21231 [Phytophthora parasitica CJ01A1] >gi|570966597|gb|ETP29716.1| hypothetical protein F442_21172 [Phytophthora parasitica P10297]) HSP 1 Score: 68.1662 bits (165), Expect = 1.593e-9 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query: 9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
+DGG+++ECD + C KVYHE CL Y V W CPRH C CG I H CRYC SYCQ+H+P + K S + + CP C + A +++++S
Sbjct: 484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|970665693|gb|KUG02283.1| (Histone-lysine N-methyltransferase NSD3 [Phytophthora nicotianae]) HSP 1 Score: 68.1662 bits (165), Expect = 1.638e-9 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query: 9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
+DGG+++ECD + C KVYHE CL Y V W CPRH C CG I H CRYC SYCQ+H+P + K S + + CP C + A +++++S
Sbjct: 484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|675212293|ref|XP_008915031.1| (hypothetical protein PPTG_18890 [Phytophthora parasitica INRA-310] >gi|568084730|gb|ETM99652.1| hypothetical protein PPTG_18890 [Phytophthora parasitica INRA-310]) HSP 1 Score: 68.1662 bits (165), Expect = 1.701e-9 Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query: 9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
+DGG+++ECD + C KVYHE CL Y V W CPRH C CG I H CRYC SYCQ+H+P + K S + + CP C + A +++++S
Sbjct: 484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|698803872|ref|XP_009834965.1| (hypothetical protein H257_10196 [Aphanomyces astaci] >gi|574110334|gb|ETV75834.1| hypothetical protein H257_10196 [Aphanomyces astaci]) HSP 1 Score: 66.6254 bits (161), Expect = 5.430e-9 Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 0
Query: 9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRI-RHCCRYCPNSYCQEHVPP---LAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQEL 122
+DGG+L+ECD + I C KVYH CL + V + V W CPRH CA ++ ++ CR+CP ++C++H+P L FP +H + C C +++A R+ L
Sbjct: 472 KDGGDLIECDFKAK---IKCPKVYHVDCLGFDVPDD--VTWICPRHYCAFPKCTQVSKYSCRFCPAAHCEKHLPASSVLLFPTPPD------THPSTSYVLCESCDVQIVQAVHRRLL 578 The following BLAST results are available for this feature:
BLAST of EWM25601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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