EWM25601.1, cds5072 (CDS) Nannochloropsis gaditana

Overview
NameEWM25601.1
Unique Namecds5072
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:78739..78828 -
Alignment locationCM002465.1:78415..78530 -
Alignment locationCM002465.1:78051..78130 -
Alignment locationCM002465.1:77847..77920 -
Alignment locationCM002465.1:77135..77515 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25601.1
Producthistone-lysine n- h3 lysine-36 and h4 lysine-20 specific
Orig transcript idgnl|cribi|Naga_100936g1.9423.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:78739..78828 -
CM002465.1supercontigCM002465.1:78415..78530 -
CM002465.1supercontigCM002465.1:78051..78130 -
CM002465.1supercontigCM002465.1:77847..77920 -
CM002465.1supercontigCM002465.1:77135..77515 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|585107410|gb|EWM25601.1| (histone-lysine n- h3 lysine-36 and h4 lysine-20 specific [Nannochloropsis gaditana])

HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI 246
            MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI
Sbjct:    1 MVLPPSSLQDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVDDILDHYLHFGQIETEGGPEGKEEVGKKRERARVRPFHPVLQTCFVAEGHEVPWNNDNDKEREEVKELERDEEREERKNGWAWRVRKCRRGEGYTLYEPKAHKCPQIETAQEKLTI 246          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|325188025|emb|CCA22568.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 77.411 bits (189), Expect = 1.053e-12
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0
Query:    9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
            +DGG+++ CD   ++K + C KVYHE CL YTV    NVRW CPRHLC +CGE   R  CR+C +SYC +HV 
Sbjct:  306 RDGGDVILCDWKGKNK-LPCPKVYHEECLGYTVP--KNVRWVCPRHLCHLCGE-MARFLCRFCVSSYCDKHVT 374          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|1173961254|gb|OQS07302.1| (hypothetical protein THRCLA_12202 [Thraustotheca clavata])

HSP 1 Score: 70.4774 bits (171), Expect = 2.986e-10
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
            +DGG L+ECD+  + K   C KVYH+    Y +      +W+CPRH C VC  K   HCCR+C  SYC+EH+P
Sbjct:  417 KDGGELIECDYTSKSKGARCPKVYHK---GYPIPDKG--KWHCPRHTCFVC-IKPSTHCCRFCVTSYCEEHIP 483          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|669156020|ref|XP_008613572.1| (hypothetical protein SDRG_09417 [Saprolegnia diclina VS20] >gi|530734644|gb|EQC32886.1| hypothetical protein SDRG_09417 [Saprolegnia diclina VS20])

HSP 1 Score: 69.707 bits (169), Expect = 4.272e-10
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 0
Query:    9 QDGGNLLECDHDLRDK-SIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGFCSVVD 131
            +DGG L+ECDH  + K ++ C KVYH  CL   +       W CPRH C  C      HCCR+C  +YC++HVP  A      L P          I+C  C+  +  A  R  L S F S   
Sbjct:  405 KDGGVLIECDHVAKHKGAVRCPKVYHPDCLGSAIPDKG--LWRCPRHFCFKCSAPTT-HCCRFCVAAYCEKHVPRTAV----VLGPAPADLPNATYITCRPCIEQLDEAAARGLLPSAFYSATS 521          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|301128022|ref|XP_002909971.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096040|gb|EEY54092.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.3218 bits (168), Expect = 5.189e-10
Identity = 41/103 (39.81%), Postives = 50/103 (48.54%), Query Frame = 0
Query:    9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCV 110
            +DGGN++ECD   L      C KVYHE CL Y V       W CPRH C  CG     H CR+C  SYCQ+H+P     +    K    S +    + CP C 
Sbjct:  346 KDGGNVIECDWKGLNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCGII-AHHSCRFCVTSYCQDHLPKEVKRLGRATKDIPTSTY----VMCPRCT 441          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|1173947993|gb|OQR96158.1| (hypothetical protein ACHHYP_16919 [Achlya hypogyna])

HSP 1 Score: 68.5514 bits (166), Expect = 1.076e-9
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0
Query:    9 QDGGNLLECDHDLRDKS-IHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRHCCRYCPNSYCQEHVP 81
            +DGG L+ECDH  + K  + C KVYH+ CLN+ +       W CPRH C  C       CCR+C  +YC +HVP
Sbjct:  411 KDGGVLIECDHTTKSKGGVRCPKVYHKDCLNHPIPDKGT--WRCPRHFCFKCSAAS-SVCCRFCAMAYCDKHVP 481          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|566008832|gb|ETI31743.1| (hypothetical protein F443_21333 [Phytophthora parasitica P1569] >gi|567946308|gb|ETK72119.1| hypothetical protein L915_20735 [Phytophthora parasitica] >gi|567974975|gb|ETL25549.1| hypothetical protein L916_20618 [Phytophthora parasitica] >gi|568004439|gb|ETL78763.1| hypothetical protein L917_20480 [Phytophthora parasitica] >gi|568034362|gb|ETM32035.1| hypothetical protein L914_20488 [Phytophthora parasitica] >gi|570312507|gb|ETO60455.1| hypothetical protein F444_21356 [Phytophthora parasitica P1976] >gi|570936286|gb|ETP01543.1| hypothetical protein F441_21231 [Phytophthora parasitica CJ01A1] >gi|570966597|gb|ETP29716.1| hypothetical protein F442_21172 [Phytophthora parasitica P10297])

HSP 1 Score: 68.1662 bits (165), Expect = 1.593e-9
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query:    9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
            +DGG+++ECD   +      C KVYHE CL Y V       W CPRH C  CG   I H  CRYC  SYCQ+H+P     +    K    S +    + CP C  +   A  +++++S  
Sbjct:  484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|970665693|gb|KUG02283.1| (Histone-lysine N-methyltransferase NSD3 [Phytophthora nicotianae])

HSP 1 Score: 68.1662 bits (165), Expect = 1.638e-9
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query:    9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
            +DGG+++ECD   +      C KVYHE CL Y V       W CPRH C  CG   I H  CRYC  SYCQ+H+P     +    K    S +    + CP C  +   A  +++++S  
Sbjct:  484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|675212293|ref|XP_008915031.1| (hypothetical protein PPTG_18890 [Phytophthora parasitica INRA-310] >gi|568084730|gb|ETM99652.1| hypothetical protein PPTG_18890 [Phytophthora parasitica INRA-310])

HSP 1 Score: 68.1662 bits (165), Expect = 1.701e-9
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 0
Query:    9 QDGGNLLECD-HDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRIRH-CCRYCPNSYCQEHVPPLAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQELKSGF 126
            +DGG+++ECD   +      C KVYHE CL Y V       W CPRH C  CG   I H  CRYC  SYCQ+H+P     +    K    S +    + CP C  +   A  +++++S  
Sbjct:  484 KDGGDVIECDWKGMNGAFARCPKVYHEDCLGYEVPEGKT--WVCPRHRCQDCG--IIAHYSCRYCVTSYCQDHLPKEVKRLGHATKDIPTSTY----VMCPRCTQMAKDALKQKKIESDL 595          
BLAST of EWM25601.1 vs. NCBI_GenBank
Match: gi|698803872|ref|XP_009834965.1| (hypothetical protein H257_10196 [Aphanomyces astaci] >gi|574110334|gb|ETV75834.1| hypothetical protein H257_10196 [Aphanomyces astaci])

HSP 1 Score: 66.6254 bits (161), Expect = 5.430e-9
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 0
Query:    9 QDGGNLLECDHDLRDKSIHCKKVYHEYCLNYTVSTNPNVRWYCPRHLCAVCGEKRI-RHCCRYCPNSYCQEHVPP---LAFPIAEQLKPRELSHHQLQEISCPDCVCLVIRARFRQEL 122
            +DGG+L+ECD   +   I C KVYH  CL + V  +  V W CPRH CA     ++ ++ CR+CP ++C++H+P    L FP          +H     + C  C   +++A  R+ L
Sbjct:  472 KDGGDLIECDFKAK---IKCPKVYHVDCLGFDVPDD--VTWICPRHYCAFPKCTQVSKYSCRFCPAAHCEKHLPASSVLLFPTPPD------THPSTSYVLCESCDVQIVQAVHRRLL 578          
The following BLAST results are available for this feature:
BLAST of EWM25601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107410|gb|EWM25601.1|0.000e+0100.00histone-lysine n- h3 lysine-36 and h4 lysine-20 sp... [more]
gi|325188025|emb|CCA22568.1|1.053e-1253.42conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173961254|gb|OQS07302.1|2.986e-1046.58hypothetical protein THRCLA_12202 [Thraustotheca c... [more]
gi|669156020|ref|XP_008613572.1|4.272e-1036.29hypothetical protein SDRG_09417 [Saprolegnia dicli... [more]
gi|301128022|ref|XP_002909971.1|5.189e-1039.81conserved hypothetical protein [Phytophthora infes... [more]
gi|1173947993|gb|OQR96158.1|1.076e-944.59hypothetical protein ACHHYP_16919 [Achlya hypogyna... [more]
gi|566008832|gb|ETI31743.1|1.593e-935.83hypothetical protein F443_21333 [Phytophthora para... [more]
gi|970665693|gb|KUG02283.1|1.638e-935.83Histone-lysine N-methyltransferase NSD3 [Phytophth... [more]
gi|675212293|ref|XP_008915031.1|1.701e-935.83hypothetical protein PPTG_18890 [Phytophthora para... [more]
gi|698803872|ref|XP_009834965.1|5.430e-933.90hypothetical protein H257_10196 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5084rna5084Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications