EWM25612.1, cds5062 (CDS) Nannochloropsis gaditana

Overview
NameEWM25612.1
Unique Namecds5062
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:42602..42691 -
Alignment locationCM002465.1:42298..42384 -
Alignment locationCM002465.1:41945..42115 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25612.1
ProductMajor facilitator superfamily domain, general substrate transporter
Orig transcript idgnl|cribi|Naga_100811g1.10700.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:42602..42691 -
CM002465.1supercontigCM002465.1:42298..42384 -
CM002465.1supercontigCM002465.1:41945..42115 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Homology
[Close]
BLAST of EWM25612.1 vs. NCBI_GenBank
Match: gi|585107431|gb|EWM25612.1| (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana])

HSP 1 Score: 226.483 bits (576), Expect = 5.629e-75
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MAGTAMGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED 115
            MAGTAMGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED
Sbjct:    1 MAGTAMGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED 115
[Close]
BLAST of EWM25612.1 vs. NCBI_GenBank
Match: gi|553191457|ref|XP_005855382.1| (hypothetical protein NGA_0077100 [Nannochloropsis gaditana CCMP526] >gi|422293681|gb|EKU20981.1| hypothetical protein NGA_0077100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 216.853 bits (551), Expect = 3.084e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    6 MGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED 115
            MGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED
Sbjct:    1 MGVQGLIGQVGASWAGAPVGFVAQHWGWGAIRHLWAASLLASAGLLSAPGLIVKARRAAERHRGKEGPLIKLFNYYIPPEEERMEALRAAQAARVEQVKGSGRRREKKED 110
The following BLAST results are available for this feature:
BLAST of EWM25612.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107431|gb|EWM25612.1|5.629e-75100.00Major facilitator superfamily domain, general subs... [more]
gi|553191457|ref|XP_005855382.1|3.084e-71100.00hypothetical protein NGA_0077100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5074rna5074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications