EWM25619.1, cds5052 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|585107443|gb|EWM25619.1| (putative membrane permease [Nannochloropsis gaditana]) HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0 Query: 1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP Sbjct: 1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|553186815|ref|XP_005854496.1| (putative membrane permease [Nannochloropsis gaditana CCMP526] >gi|422294568|gb|EKU21868.1| putative membrane permease [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0 Identity = 307/312 (98.40%), Postives = 311/312 (99.68%), Query Frame = 0 Query: 1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312 MVSSEPDTSPLGSRLLPWANLGAY+LNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVL+QLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLR+ALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAK+LSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRG GEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP Sbjct: 1 MVSSEPDTSPLGSRLLPWANLGAYVLNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLVQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRQALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKELSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGGGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1133893673|ref|WP_076267817.1| (hypothetical protein [Paenibacillus sp. FSL A5-0031] >gi|1133193923|gb|OME83911.1| hypothetical protein BK120_12370 [Paenibacillus sp. FSL A5-0031]) HSP 1 Score: 116.701 bits (291), Expect = 2.009e-27 Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = 0 Query: 41 GKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLG---GFRLVDPIFCLVLVWAGTAIA-KQLSAPVASIS 238 GKT E+SA YP L TPA YAFSIW +I+ + F +YQ P + +Q +GPW+I+ L + W L + E + S+F M + +SL+ + ++R+ + P+ + + LPFS+ GWI A + NA +V + L+ A + ++L A+LL GFR DP F LV VW+ AIA KQ P S+S Sbjct: 30 GKTTGEISAKYPVLITPAPYAFSIWSIIYLLLIGFVIYQFKPRAGKSKTVQ-NIGPWFIISCLFNVAWILLWHYEKLTSSVFIMFALLISLIVIYTAIRKN-NQPPAPMEQWLVRLPFSIYLGWICVASIVNAAVVLYAAEWNGFG--LSDAAWTIILLIAASLLAVVIGFRFGDPAFVLVFVWSFIAIAVKQDQQPEVSLS 227
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|224011122|ref|XP_002294518.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970013|gb|EED88352.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 113.235 bits (282), Expect = 1.111e-25 Identity = 80/233 (34.33%), Postives = 115/233 (49.36%), Query Frame = 0 Query: 20 NLGAYILNIVATSVIGTSGKVGK-TNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDS-EDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCL--VLVWAGTAIAKQLSAPVASISASFPPPVTQG 248 NL A+I NIV IG +G +G TN E+S Y T+ TP AFSIW +I+ + FA+ QLLP R+ +QKGVG W L+V +Q+GW+ +FA E I S+++ SL + L PF+++ GWITAA N N+ V + D+ LA + S VL ++ F + P + + VL WA I +L P+ I +F G Sbjct: 26 NLIAFIANIVLVYGIGNAGWIGTPTNGELSDKYQTIVTPNSSAFSIWAVIYVFQALFAIGQLLPKFRAVDMVQKGVGYWHCLVVTMQIGWTFTFAYEVIEASLYYT------------------ESDGSLWEFWLLRFPFAIHGGWITAASALNVNVQVVSMEQPSDV--QLAVGIISLAVLHAISVWVLFNIPRPNWTIACVLSWALGWIYNELQDPLDMIKDTFSADTISG 238
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|738757525|ref|WP_036651042.1| (tryptophan-rich sensory protein [Paenibacillus pini] >gi|585395929|dbj|GAF09486.1| hypothetical protein JCM16418_3629 [Paenibacillus pini JCM 16418]) HSP 1 Score: 111.309 bits (277), Expect = 2.444e-25 Identity = 79/215 (36.74%), Postives = 116/215 (53.95%), Query Frame = 0 Query: 17 PWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSED--LASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQ 229 W N+ A+I +V + T+ G+ E+S YPTL TPAGYAF IWGLI+ + F +YQ S + ++ +GPW+I+ LL +GW L + I LS+ M + +SL+ L L RR P+L + + LPFSL GWI+ A + N VA+ +++ D S A+ +V + A+L F D I+ LV VWA AIA + Sbjct: 8 KWWNVLAFIAVLVINGLASTTILGGRQTGEISDMYPTLLTPAGYAFMIWGLIYLLLLGFIIYQSKRSSETRDSVLS-IGPWFIISCLLNVGWLLLWQYLYIELSVVVMALLLISLIVLYLKTRRI--HYPTLGEMWLVKLPFSLYLGWISVATIVNVG-VALEKNNWDGFGLSDATWAIIMLIVGTVLAVLVSFPYRDSIYPLVFVWAYIAIAVK 218
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1100995021|ref|WP_071500764.1| (tryptophan-rich sensory protein [Exiguobacterium sp. KRL4] >gi|1100707215|gb|OIN65856.1| tryptophan-rich sensory protein [Exiguobacterium sp. KRL4]) HSP 1 Score: 110.153 bits (274), Expect = 4.489e-25 Identity = 76/217 (35.02%), Postives = 119/217 (54.84%), Query Frame = 0 Query: 18 WANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVS--SCVVLG---LAALLGGFRLVDPIFCLVLVWAGTAIAKQ 229 W N ++ I ++ G GK G+ + +S TLF PAGYAFSIWGLI+A+ + + Q +P + I K +GPW+++ L GW +SF+ + PLS+ +VG+ LSL+ + + R +++ LPFSL GW++ A +AN + + D+E++ S L + + ++LG + ALL F DPI+ LV VWA AI Q Sbjct: 7 WLNWLGFVFTIAVNALDG--GKTGRISDTIS----TLFKPAGYAFSIWGLIYAVLLVWLIMQTIPKFKEHE-IAKKIGPWFLISCLFNAGWIVSFSFKLFPLSVVVIVGLLLSLIVIYSKIDRE-------TKALRFKLPFSLYLGWVSVATIAN---IFLTLDTENINSLLGIGDAGWTMIMLGVGVIVALLFMFANRDPIYPLVFVWAYIAINFQ 206
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1210520821|dbj|GAX20384.1| (hypothetical protein FisN_9Hh097 [Fistulifera solaris]) HSP 1 Score: 110.923 bits (276), Expect = 5.641e-25 Identity = 88/270 (32.59%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 16 LPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQ-AVFVLVGFAALAALHAAGRRVLLRRGEGEDTQG 284 LP+ NL AYI N+ T IG TN+E+S Y TL TP G+AF+IW LIF ++G + + +++ +G ++ +V+ Q GW+LSF+ E I SM FM + S L T++ LP + + LPF+L+ GWITAA L NAN+V VY + + A+ S + L A+ R D + L WA I ++LS+P +I +F L Q A + + AL + R RR + ++ Sbjct: 11 LPYWNLAAYIFNVAVTFGIGILR--SPTNAELSEKYQTLVTPVGWAFAIWSLIFTLQGVWVAWPFFSEKKTSI-----IGYRYVWIVIAQAGWTLSFSHERIVASMLFMTAL-ASFLWETVA---TLPPPATWKEYAVTHLPFTLHAGWITAATLVNANVVLVYLGVAA-PTQYSAALMSLLSLFALAVSEVLRDHDWVIPATLAWAAYGIHRELSSPKFAIRITFSERQIGHLQQGAAWATMTIVALLVVRIGIRLTTRRRPLHQSSEA 268
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1154124724|ref|WP_078500326.1| (hypothetical protein [Paenibacillus selenitireducens] >gi|1153080924|gb|OPA76148.1| hypothetical protein BVG16_18215 [Paenibacillus selenitireducens]) HSP 1 Score: 110.153 bits (274), Expect = 6.127e-25 Identity = 80/228 (35.09%), Postives = 116/228 (50.88%), Query Frame = 0 Query: 13 SRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLL--LPFSLNFGWITAALLANANIVAVYRDSEDLA-SHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAI-AKQLSAPVAS 236 SRLL W N A L ++ + G+T E+SA YPT TPA YAF IWGLI+ + F +YQLLP+VRS P + + +G W+I+ + + W L + I ++F M + LSL A+ R A RP + + L +PFS+ GWIT A + N ++V + S +A + L A G + DP + L +VW AI Q S+PV + Sbjct: 4 SRLLAWGNALALALVLLVNGLAERLPINGRTTGEISAMYPTRITPASYAFMIWGLIYGLLILFVIYQLLPAVRSKPEV-RDIGGWFIVSCAMNIAWLLLWHYLYIDATVFIMFALLLSLFAVYTRTRSA---RPPIRDAAFWLVSVPFSIYLGWITVASIVNVSVVLINHQWNRWGLSEVAWTGIILLAFILLAWWIGHKFEDPFYLLTIVWTLIAIGVNQQSSPVLT 227
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1072224390|gb|OEU09141.1| (hypothetical protein FRACYDRAFT_264399 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 109.383 bits (272), Expect = 2.726e-24 Identity = 81/259 (31.27%), Postives = 131/259 (50.58%), Query Frame = 0 Query: 18 WANLGAYILNIVATSVIGTSGKVGK-TNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWI--LMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAV---FVLVGFAALAALHAAGR 270 W NL AYI+N+ T IG G G+ N E+SA Y T+ TP G++FSIWG+IF + + ++Q LPS R++ + K W+ +M + Q GW++SF+ E + +++ M GI ++L+ T SL+ + + + PFS+ GWI AA + N+ V ++ + +++S V+LG A VD LV+VWA + +L P I+ F G+ V +LV F + + R Sbjct: 33 WLNLLAYIVNVFVTFGIGIFGLTGQPDNGELSAKYQTIVTPFGFSFSIWGVIFIWQAIWVVWQFLPSQRNSEGVLKA---WYYYPIMTVFQAGWTISFSYEIMWVALLCMYGIVITLVMATRSLQS---YKKTWKGYLLWQGPFSIQTGWIMAAAVVMTNVFTVSYNANVTTQLIVSSLSLVVLLGTAFTYLSSYPVDFAIPLVIVWALGGVYAELQEPSTKITDQFTVEQISGVQYGVLGGLLLVSFGIIVKVFVQVR 285
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|934100271|gb|KPL73142.1| (hypothetical protein AC812_15215 [Bellilinea caldifistulae]) HSP 1 Score: 108.227 bits (269), Expect = 4.070e-24 Identity = 79/227 (34.80%), Postives = 116/227 (51.10%), Query Frame = 0 Query: 11 LGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSL----RRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPI-------FCLVLVWAGTAI 226 L R + W NL + IV ++ +T E+S +YP LFTPAGY F+IWGLI+ F +YQLLPS + I + +G W+I L W ++ IPLSM M+G+ +SLLA+ L L + A P SL PFSL GWI+ A +ANA+++ +Y + D ++ V G+ ++GG + I + LV+VWA + I Sbjct: 2 LSMRTIRWLNLITLVFTIVVNTLANALPINNRTTGEISDSYPVLFTPAGYVFAIWGLIYLSLLGFGIYQLLPSQQKNSHIDR-IGGWFIAANLFNGAWIFAWHYGLIPLSMLVMLGLLISLLAIYLRLGIGVQEASPADRSLIH-----FPFSLYLGWISVATIANASVL-LYTLNWD-----GFGIAPEVWTGVVIVIGGLLAIAMIHYRNAITYPLVIVWAFSGI 216 The following BLAST results are available for this feature:
BLAST of EWM25619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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