EWM25619.1, cds5052 (CDS) Nannochloropsis gaditana

Overview
NameEWM25619.1
Unique Namecds5052
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:12818..12956 +
Alignment locationCM002465.1:13427..14226 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25619.1
Productputative membrane permease
Orig transcript idgnl|cribi|Naga_100251g7.7588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:12818..12956 +
CM002465.1supercontigCM002465.1:13427..14226 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|585107443|gb|EWM25619.1| (putative membrane permease [Nannochloropsis gaditana])

HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312
            MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP
Sbjct:    1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|553186815|ref|XP_005854496.1| (putative membrane permease [Nannochloropsis gaditana CCMP526] >gi|422294568|gb|EKU21868.1| putative membrane permease [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 307/312 (98.40%), Postives = 311/312 (99.68%), Query Frame = 0
Query:    1 MVSSEPDTSPLGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGEGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312
            MVSSEPDTSPLGSRLLPWANLGAY+LNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVL+QLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLR+ALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAK+LSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRG GEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP
Sbjct:    1 MVSSEPDTSPLGSRLLPWANLGAYVLNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLVQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRQALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKELSAPVASISASFPPPVTQGLSQAVFVLVGFAALAALHAAGRRVLLRRGGGEDTQGEEKEGESRQGDTGSPAGVRAAAQALLKP 312          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1133893673|ref|WP_076267817.1| (hypothetical protein [Paenibacillus sp. FSL A5-0031] >gi|1133193923|gb|OME83911.1| hypothetical protein BK120_12370 [Paenibacillus sp. FSL A5-0031])

HSP 1 Score: 116.701 bits (291), Expect = 2.009e-27
Identity = 74/202 (36.63%), Postives = 110/202 (54.46%), Query Frame = 0
Query:   41 GKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLG---GFRLVDPIFCLVLVWAGTAIA-KQLSAPVASIS 238
            GKT  E+SA YP L TPA YAFSIW +I+ +   F +YQ  P    +  +Q  +GPW+I+  L  + W L +  E +  S+F M  + +SL+ +  ++R+   + P+  +   + LPFS+  GWI  A + NA +V    +       L+ A  + ++L  A+LL    GFR  DP F LV VW+  AIA KQ   P  S+S
Sbjct:   30 GKTTGEISAKYPVLITPAPYAFSIWSIIYLLLIGFVIYQFKPRAGKSKTVQ-NIGPWFIISCLFNVAWILLWHYEKLTSSVFIMFALLISLIVIYTAIRKN-NQPPAPMEQWLVRLPFSIYLGWICVASIVNAAVVLYAAEWNGFG--LSDAAWTIILLIAASLLAVVIGFRFGDPAFVLVFVWSFIAIAVKQDQQPEVSLS 227          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|224011122|ref|XP_002294518.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970013|gb|EED88352.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 113.235 bits (282), Expect = 1.111e-25
Identity = 80/233 (34.33%), Postives = 115/233 (49.36%), Query Frame = 0
Query:   20 NLGAYILNIVATSVIGTSGKVGK-TNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDS-EDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCL--VLVWAGTAIAKQLSAPVASISASFPPPVTQG 248
            NL A+I NIV    IG +G +G  TN E+S  Y T+ TP   AFSIW +I+  +  FA+ QLLP  R+   +QKGVG W  L+V +Q+GW+ +FA E I  S+++                       SL +   L  PF+++ GWITAA   N N+  V  +   D+   LA  + S  VL   ++   F +  P + +  VL WA   I  +L  P+  I  +F      G
Sbjct:   26 NLIAFIANIVLVYGIGNAGWIGTPTNGELSDKYQTIVTPNSSAFSIWAVIYVFQALFAIGQLLPKFRAVDMVQKGVGYWHCLVVTMQIGWTFTFAYEVIEASLYYT------------------ESDGSLWEFWLLRFPFAIHGGWITAASALNVNVQVVSMEQPSDV--QLAVGIISLAVLHAISVWVLFNIPRPNWTIACVLSWALGWIYNELQDPLDMIKDTFSADTISG 238          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|738757525|ref|WP_036651042.1| (tryptophan-rich sensory protein [Paenibacillus pini] >gi|585395929|dbj|GAF09486.1| hypothetical protein JCM16418_3629 [Paenibacillus pini JCM 16418])

HSP 1 Score: 111.309 bits (277), Expect = 2.444e-25
Identity = 79/215 (36.74%), Postives = 116/215 (53.95%), Query Frame = 0
Query:   17 PWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSED--LASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQ 229
             W N+ A+I  +V   +  T+   G+   E+S  YPTL TPAGYAF IWGLI+ +   F +YQ   S  +  ++   +GPW+I+  LL +GW L +    I LS+  M  + +SL+ L L  RR     P+L +   + LPFSL  GWI+ A + N   VA+ +++ D    S    A+   +V  + A+L  F   D I+ LV VWA  AIA +
Sbjct:    8 KWWNVLAFIAVLVINGLASTTILGGRQTGEISDMYPTLLTPAGYAFMIWGLIYLLLLGFIIYQSKRSSETRDSVLS-IGPWFIISCLLNVGWLLLWQYLYIELSVVVMALLLISLIVLYLKTRRI--HYPTLGEMWLVKLPFSLYLGWISVATIVNVG-VALEKNNWDGFGLSDATWAIIMLIVGTVLAVLVSFPYRDSIYPLVFVWAYIAIAVK 218          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1100995021|ref|WP_071500764.1| (tryptophan-rich sensory protein [Exiguobacterium sp. KRL4] >gi|1100707215|gb|OIN65856.1| tryptophan-rich sensory protein [Exiguobacterium sp. KRL4])

HSP 1 Score: 110.153 bits (274), Expect = 4.489e-25
Identity = 76/217 (35.02%), Postives = 119/217 (54.84%), Query Frame = 0
Query:   18 WANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVS--SCVVLG---LAALLGGFRLVDPIFCLVLVWAGTAIAKQ 229
            W N   ++  I   ++ G  GK G+ +  +S    TLF PAGYAFSIWGLI+A+   + + Q +P  +    I K +GPW+++  L   GW +SF+ +  PLS+  +VG+ LSL+ +   + R         +++   LPFSL  GW++ A +AN   + +  D+E++ S L    +  + ++LG   + ALL  F   DPI+ LV VWA  AI  Q
Sbjct:    7 WLNWLGFVFTIAVNALDG--GKTGRISDTIS----TLFKPAGYAFSIWGLIYAVLLVWLIMQTIPKFKEHE-IAKKIGPWFLISCLFNAGWIVSFSFKLFPLSVVVIVGLLLSLIVIYSKIDRE-------TKALRFKLPFSLYLGWVSVATIAN---IFLTLDTENINSLLGIGDAGWTMIMLGVGVIVALLFMFANRDPIYPLVFVWAYIAINFQ 206          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1210520821|dbj|GAX20384.1| (hypothetical protein FisN_9Hh097 [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 5.641e-25
Identity = 88/270 (32.59%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   16 LPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQ-AVFVLVGFAALAALHAAGRRVLLRRGEGEDTQG 284
            LP+ NL AYI N+  T  IG       TN+E+S  Y TL TP G+AF+IW LIF ++G +  +      +++      +G  ++ +V+ Q GW+LSF+ E I  SM FM  +  S L  T++    LP   +  +     LPF+L+ GWITAA L NAN+V VY       +  + A+ S + L   A+    R  D +    L WA   I ++LS+P  +I  +F       L Q A +  +   AL  +    R    RR   + ++ 
Sbjct:   11 LPYWNLAAYIFNVAVTFGIGILR--SPTNAELSEKYQTLVTPVGWAFAIWSLIFTLQGVWVAWPFFSEKKTSI-----IGYRYVWIVIAQAGWTLSFSHERIVASMLFMTAL-ASFLWETVA---TLPPPATWKEYAVTHLPFTLHAGWITAATLVNANVVLVYLGVAA-PTQYSAALMSLLSLFALAVSEVLRDHDWVIPATLAWAAYGIHRELSSPKFAIRITFSERQIGHLQQGAAWATMTIVALLVVRIGIRLTTRRRPLHQSSEA 268          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1154124724|ref|WP_078500326.1| (hypothetical protein [Paenibacillus selenitireducens] >gi|1153080924|gb|OPA76148.1| hypothetical protein BVG16_18215 [Paenibacillus selenitireducens])

HSP 1 Score: 110.153 bits (274), Expect = 6.127e-25
Identity = 80/228 (35.09%), Postives = 116/228 (50.88%), Query Frame = 0
Query:   13 SRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLL--LPFSLNFGWITAALLANANIVAVYRDSEDLA-SHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAI-AKQLSAPVAS 236
            SRLL W N  A  L ++   +       G+T  E+SA YPT  TPA YAF IWGLI+ +   F +YQLLP+VRS P + + +G W+I+   + + W L +    I  ++F M  + LSL A+    R A   RP +  +   L  +PFS+  GWIT A + N ++V +         S +A      +   L A   G +  DP + L +VW   AI   Q S+PV +
Sbjct:    4 SRLLAWGNALALALVLLVNGLAERLPINGRTTGEISAMYPTRITPASYAFMIWGLIYGLLILFVIYQLLPAVRSKPEV-RDIGGWFIVSCAMNIAWLLLWHYLYIDATVFIMFALLLSLFAVYTRTRSA---RPPIRDAAFWLVSVPFSIYLGWITVASIVNVSVVLINHQWNRWGLSEVAWTGIILLAFILLAWWIGHKFEDPFYLLTIVWTLIAIGVNQQSSPVLT 227          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|1072224390|gb|OEU09141.1| (hypothetical protein FRACYDRAFT_264399 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.383 bits (272), Expect = 2.726e-24
Identity = 81/259 (31.27%), Postives = 131/259 (50.58%), Query Frame = 0
Query:   18 WANLGAYILNIVATSVIGTSGKVGK-TNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWI--LMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSLRRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPIFCLVLVWAGTAIAKQLSAPVASISASFPPPVTQGLSQAV---FVLVGFAALAALHAAGR 270
            W NL AYI+N+  T  IG  G  G+  N E+SA Y T+ TP G++FSIWG+IF  +  + ++Q LPS R++  + K    W+   +M + Q GW++SF+ E + +++  M GI ++L+  T SL+     + +    +    PFS+  GWI AA +   N+  V  ++      + +++S  V+LG A        VD    LV+VWA   +  +L  P   I+  F      G+   V    +LV F  +  +    R
Sbjct:   33 WLNLLAYIVNVFVTFGIGIFGLTGQPDNGELSAKYQTIVTPFGFSFSIWGVIFIWQAIWVVWQFLPSQRNSEGVLKA---WYYYPIMTVFQAGWTISFSYEIMWVALLCMYGIVITLVMATRSLQS---YKKTWKGYLLWQGPFSIQTGWIMAAAVVMTNVFTVSYNANVTTQLIVSSLSLVVLLGTAFTYLSSYPVDFAIPLVIVWALGGVYAELQEPSTKITDQFTVEQISGVQYGVLGGLLLVSFGIIVKVFVQVR 285          
BLAST of EWM25619.1 vs. NCBI_GenBank
Match: gi|934100271|gb|KPL73142.1| (hypothetical protein AC812_15215 [Bellilinea caldifistulae])

HSP 1 Score: 108.227 bits (269), Expect = 4.070e-24
Identity = 79/227 (34.80%), Postives = 116/227 (51.10%), Query Frame = 0
Query:   11 LGSRLLPWANLGAYILNIVATSVIGTSGKVGKTNSEVSAAYPTLFTPAGYAFSIWGLIFAMEGAFALYQLLPSVRSTPAIQKGVGPWWILMVLLQLGWSLSFATESIPLSMFFMVGIFLSLLALTLSL----RRALPRRPSLAQSICLLLPFSLNFGWITAALLANANIVAVYRDSEDLASHLATAVSSCVVLGLAALLGGFRLVDPI-------FCLVLVWAGTAI 226
            L  R + W NL   +  IV  ++        +T  E+S +YP LFTPAGY F+IWGLI+     F +YQLLPS +    I + +G W+I   L    W  ++    IPLSM  M+G+ +SLLA+ L L    + A P   SL        PFSL  GWI+ A +ANA+++ +Y  + D        ++  V  G+  ++GG   +  I       + LV+VWA + I
Sbjct:    2 LSMRTIRWLNLITLVFTIVVNTLANALPINNRTTGEISDSYPVLFTPAGYVFAIWGLIYLSLLGFGIYQLLPSQQKNSHIDR-IGGWFIAANLFNGAWIFAWHYGLIPLSMLVMLGLLISLLAIYLRLGIGVQEASPADRSLIH-----FPFSLYLGWISVATIANASVL-LYTLNWD-----GFGIAPEVWTGVVIVIGGLLAIAMIHYRNAITYPLVIVWAFSGI 216          
The following BLAST results are available for this feature:
BLAST of EWM25619.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107443|gb|EWM25619.1|0.000e+0100.00putative membrane permease [Nannochloropsis gadita... [more]
gi|553186815|ref|XP_005854496.1|0.000e+098.40putative membrane permease [Nannochloropsis gadita... [more]
gi|1133893673|ref|WP_076267817.1|2.009e-2736.63hypothetical protein [Paenibacillus sp. FSL A5-003... [more]
gi|224011122|ref|XP_002294518.1|1.111e-2534.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|738757525|ref|WP_036651042.1|2.444e-2536.74tryptophan-rich sensory protein [Paenibacillus pin... [more]
gi|1100995021|ref|WP_071500764.1|4.489e-2535.02tryptophan-rich sensory protein [Exiguobacterium s... [more]
gi|1210520821|dbj|GAX20384.1|5.641e-2532.59hypothetical protein FisN_9Hh097 [Fistulifera sola... [more]
gi|1154124724|ref|WP_078500326.1|6.127e-2535.09hypothetical protein [Paenibacillus selenitireduce... [more]
gi|1072224390|gb|OEU09141.1|2.726e-2431.27hypothetical protein FRACYDRAFT_264399 [Fragilario... [more]
gi|934100271|gb|KPL73142.1|4.070e-2434.80hypothetical protein AC812_15215 [Bellilinea caldi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5064rna5064Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications