EWM25637.1, cds5032 (CDS) Nannochloropsis gaditana

Overview
NameEWM25637.1
Unique Namecds5032
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:1035803..1035996 -
Alignment locationCM002464.1:1034559..1035571 -
Alignment locationCM002464.1:1033267..1034420 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25637.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100037g11.10726.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:1035803..1035996 -
CM002464.1supercontigCM002464.1:1034559..1035571 -
CM002464.1supercontigCM002464.1:1033267..1034420 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25637.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana])

HSP 1 Score: 1643.25 bits (4254), Expect = 0.000e+0
Identity = 786/786 (100.00%), Postives = 786/786 (100.00%), Query Frame = 0
Query:    1 MLLSRKTTAQDSALSSWWTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLISTPQLSLSPRSMSRARIGAFLAGGEKGGKRMEKKNEEAVADSTTEYRDSQENCVRDAASGEGEMVIAAKRARHHDKTTCSGFRRIIFVGRACSESHAQALQHLPEILQPSLGQAKISSTDWFPCSGGLHRTTQEKKSFGRHHPSYDSSHGSTISDTVCSINTLTSAAGSTSLKHSMRAFERDVSKGQAPAITQASVSRTDTKRQPQQQQNVQQQEEQLYYRNLASQKHLWPPSPNGRLTRLNRPQCWVTCQRQQQHKERSVQASANQVKSPKQYGAKSEKHLTPQQQWDMAQKQHYQLQYQLSHPAKASYGPKHGHRTSRTRVHHQSLFQRRYPQPPRNVQTISCDEAEIDSASSSTSSSASLPGSRSFSCSSDSTSSSGSGYEKFRLHHSQDPAAQNLCGTGASRTFDSRVLVGVSPLRLDSEDVRQHLELRPPECYQRCLDRSRDNFNDSSTDGKEDIYLIDKTLTRAGDGQTEGWQEDERALRSEESPNAMLAELNDYFSNDWRVD 786
            MLLSRKTTAQDSALSSWWTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLISTPQLSLSPRSMSRARIGAFLAGGEKGGKRMEKKNEEAVADSTTEYRDSQENCVRDAASGEGEMVIAAKRARHHDKTTCSGFRRIIFVGRACSESHAQALQHLPEILQPSLGQAKISSTDWFPCSGGLHRTTQEKKSFGRHHPSYDSSHGSTISDTVCSINTLTSAAGSTSLKHSMRAFERDVSKGQAPAITQASVSRTDTKRQPQQQQNVQQQEEQLYYRNLASQKHLWPPSPNGRLTRLNRPQCWVTCQRQQQHKERSVQASANQVKSPKQYGAKSEKHLTPQQQWDMAQKQHYQLQYQLSHPAKASYGPKHGHRTSRTRVHHQSLFQRRYPQPPRNVQTISCDEAEIDSASSSTSSSASLPGSRSFSCSSDSTSSSGSGYEKFRLHHSQDPAAQNLCGTGASRTFDSRVLVGVSPLRLDSEDVRQHLELRPPECYQRCLDRSRDNFNDSSTDGKEDIYLIDKTLTRAGDGQTEGWQEDERALRSEESPNAMLAELNDYFSNDWRVD
Sbjct:    1 MLLSRKTTAQDSALSSWWTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLISTPQLSLSPRSMSRARIGAFLAGGEKGGKRMEKKNEEAVADSTTEYRDSQENCVRDAASGEGEMVIAAKRARHHDKTTCSGFRRIIFVGRACSESHAQALQHLPEILQPSLGQAKISSTDWFPCSGGLHRTTQEKKSFGRHHPSYDSSHGSTISDTVCSINTLTSAAGSTSLKHSMRAFERDVSKGQAPAITQASVSRTDTKRQPQQQQNVQQQEEQLYYRNLASQKHLWPPSPNGRLTRLNRPQCWVTCQRQQQHKERSVQASANQVKSPKQYGAKSEKHLTPQQQWDMAQKQHYQLQYQLSHPAKASYGPKHGHRTSRTRVHHQSLFQRRYPQPPRNVQTISCDEAEIDSASSSTSSSASLPGSRSFSCSSDSTSSSGSGYEKFRLHHSQDPAAQNLCGTGASRTFDSRVLVGVSPLRLDSEDVRQHLELRPPECYQRCLDRSRDNFNDSSTDGKEDIYLIDKTLTRAGDGQTEGWQEDERALRSEESPNAMLAELNDYFSNDWRVD 786          
BLAST of EWM25637.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana])

HSP 1 Score: 182.57 bits (462), Expect = 9.924e-45
Identity = 93/245 (37.96%), Postives = 144/245 (58.78%), Query Frame = 0
Query:   33 YDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLI 277
            Y+  + A   F +V A+LK  G+LQH++ALAII TW+      +VD +CG  NL+LR LAS   +    + QV +R   S+      +L+E  ++PA V  L E A S SCGF++  G FR+WT+  FSA Y   E+ N +    G+LP + FG I     ++ F++ +A HML D++E  T SMV++T+GRD  + + L+ IRY + N G  +  A+N+ P++Y  A   +S A + S  S+++
Sbjct:   62 YECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVM 306          
BLAST of EWM25637.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 160.229 bits (404), Expect = 3.786e-40
Identity = 84/249 (33.73%), Postives = 134/249 (53.82%), Query Frame = 0
Query:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLW-LLSIDKLMEPKNMPATVRSL----REEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAA 261
            W L GEL    GL++  HC LA+  F  +  +L+  G+LQH K   I+R W+  C   K D TCG    L R+LASP P GV    Q  ++ ++S++    I++ + P +MP  V  L    R+E  ++ CG+ + +G F++WT+  F+ +Y +  + N       +LP + +G +F P  R  FYE + E++L    E    +MV+E +  DG     LV  R+ ++N GQ   FAM+  PL  ++A+
Sbjct:   12 WALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAV-CGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASAS 259          
BLAST of EWM25637.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana])

HSP 1 Score: 165.236 bits (417), Expect = 9.937e-39
Identity = 85/251 (33.86%), Postives = 135/251 (53.78%), Query Frame = 0
Query:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLW-LLSIDKLMEPKNMPATVRSL----REEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVH 263
            W L GEL    GL++  HC LAA  F  +  +L+  G+LQH K   I+R W+  C   K D TCG    L R+LASP P GV    Q  ++ ++S++    I++ + P +MP  V  L    R+E  ++ CG+ + +G F++WT+  F+ +Y +  + N       +LP + +G +F P  R  FYE + E++L    E    +MV+E +  DG     LV  R+ ++N GQ   FAM+  PL  ++A+ +
Sbjct:   12 WALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAV-CGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSY 261          
BLAST of EWM25637.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 160.614 bits (405), Expect = 4.863e-37
Identity = 92/289 (31.83%), Postives = 148/289 (51.21%), Query Frame = 0
Query:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLA-------------SPTPSGVDCIPQVQMRTDLSLWLLSIDK--LMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNL-----RPLEYSNAAVH-DSIATSVSFSSTLISTPQLSLS 285
            W L   L  P GL  YDHC   A  F +   ++   G+LQH K LAI+RTW+     + +D +CG +  ++RVLA             S    G +    V+   DL    L++D+   ++  +MP+ V SL++   S   G+V+  G +R+WT  RF+  +M+   VN+    T +LP F FG+  +P  R NFY  + E+ML  + EG   ++ ++ +  DG + K LV  RY +LN GQ S FA++       P+ +    +H  SIA++ +  S   + P +S++
Sbjct:  584 WALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDL----LAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVRFVPPTIHPSSIASAAADQSRSDACPDVSMA 868          
The following BLAST results are available for this feature:
BLAST of EWM25637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585107465|gb|EWM25637.1|0.000e+0100.00hypothetical protein Naga_100037g11 [Nannochlorops... [more]
gi|585112110|gb|EWM29539.1|9.924e-4537.96hypothetical protein Naga_100006g24 [Nannochlorops... [more]
gi|553178084|ref|XP_005852521.1|3.786e-4033.73hypothetical protein NGA_0534002 [Nannochloropsis ... [more]
gi|585112121|gb|EWM29550.1|9.937e-3933.86hypothetical protein Naga_100006g18 [Nannochlorops... [more]
gi|585110393|gb|EWM28051.1|4.863e-3731.83fungal specific transcription [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5044rna5044Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications