EWM25670.1, cds5003 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|585107506|gb|EWM25670.1| (er lumen protein retaining receptor [Nannochloropsis gaditana]) HSP 1 Score: 702.59 bits (1812), Expect = 0.000e+0 Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0
Query: 1 MKMLEHPFARLQAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348
MKMLEHPFARLQAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV
Sbjct: 1 MKMLEHPFARLQAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|553185877|ref|XP_005854326.1| (er lumen protein retaining receptor, partial [Nannochloropsis gaditana CCMP526] >gi|422294733|gb|EKU22033.1| er lumen protein retaining receptor, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0 Identity = 276/337 (81.90%), Postives = 279/337 (82.79%), Query Frame = 0
Query: 12 QAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348
QAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPC ALAVLFHPGLNSHFLADTTWAFS+ S++V V FVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV
Sbjct: 1 QAAWASNPELLVVFLYTLLRGSLHCFSGLSNTPRTSNKFSIIMGESKGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCFALAVLFHPGLNSHFLADTTWAFSI-----------------GSKMVGV--------------------------------------FVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 282
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|1210521154|dbj|GAX19902.1| (hypothetical protein FisN_1Lh630 [Fistulifera solaris]) HSP 1 Score: 299.671 bits (766), Expect = 1.926e-96 Identity = 143/264 (54.17%), Postives = 190/264 (71.97%), Query Frame = 0
Query: 84 WVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGL 347
W GF SL V+ L+S GDFSF+MTYGA AR FGFG+L VK + ++ ATGVS K+LQLY LVFFFRLTSII GYLPYDKSGDW YH +E +SL ++Y V F +Y D FG +VP GA VY+AVP L +++ HP LN+ FL+DT W ++MYLES+A++PQLYMFQKQ+S VVE+L H+V A GF R+++ +FW+ SYHEL SGS++ G L +QF+ ++LM+DFF+YY ++V++ PL LP+ G+
Sbjct: 96 WAGFFTASLFVYFLLSGGDFSFLMTYGAMARMFGFGILIVKTYKSQRATGVSVKSLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHLIEIMSLIFTSAALYGCMVPFKGTYQADMDRFGEFNVPPGAGA-VYIAVPVLIISIFIHPNLNADFLSDTAWTYAMYLESMALIPQLYMFQKQTSGVVELLTAHFVAALGFGRLMEFLFWIYSYHELASSSGSRLPGYLALFSQFVQLVLMIDFFWYYYMAVKNATPLVLPQHSGM 358
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|1072230889|gb|OEU15622.1| (hypothetical protein FRACYDRAFT_170314, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 298.516 bits (763), Expect = 4.502e-96 Identity = 147/248 (59.27%), Postives = 182/248 (73.39%), Query Frame = 0
Query: 82 LAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYY 329
L W GF SL V+ ++S GDFSF+MTYG ARTFGFG+L +K + ++ ATGVS KTLQLY +VFFFRLTSII GYLPYDKSGDW YHFVE +SL L +++Y V F H+Y D FG L VP GA VYLA P L LA++ HP LN+ F++DT W ++MYLES A+LPQLYMFQKQSS VVE+L H+VFA GF RV++ +FW+ SYHEL D SGSK+ G L + + II+M+DFF+YY
Sbjct: 113 LMWAGFFSASLFVYFMMSGGDFSFLMTYGGMARTFGFGILNLKTFKSQRATGVSIKTLQLYVIVFFFRLTSIIRHEGYLPYDKSGDWLYHFVEGMSLVLASLALYACMVPFKHTYQAELDKFGELLVPPGTGA-VYLAAPILLLAIIVHPNLNADFISDTAWTYAMYLESAALLPQLYMFQKQSSGVVELLTAHFVFALGFGRVMEFLFWIYSYHELADASGSKLPGYLALFSLAVQIIMMLDFFWYY 359
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|1210512311|dbj|GAX28580.1| (hypothetical protein FisN_1Hh630 [Fistulifera solaris]) HSP 1 Score: 298.516 bits (763), Expect = 5.347e-96 Identity = 142/264 (53.79%), Postives = 190/264 (71.97%), Query Frame = 0
Query: 84 WVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGL 347
W GF SL V+ L+S GDFSF+MTYGA AR FGFG+L VK + ++ ATGVS K+LQLY LVFFFRLTSII GYLPYDKSGDW YH +E +SL ++Y V F +Y D FG +VP GA VY+A+P L +++ HP LN+ FL+DT W ++MYLES+A++PQLYMFQKQ+S VVE+L H+V A GF R+++ +FW+ SYHEL SGS++ G L +QF+ ++LM+DFF+YY ++V++ PL LP+ G+
Sbjct: 96 WAGFFTASLFVYFLLSGGDFSFLMTYGAMARMFGFGILIVKTYKSQRATGVSVKSLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHLIEIMSLIFTSAALYGCMVPFKGTYQADMDRFGEFNVPPGAGA-VYIALPVLIISIFIHPNLNADFLSDTAWTYAMYLESMALIPQLYMFQKQTSGVVELLTAHFVAALGFGRLMEFLFWIYSYHELASSSGSRLPGYLALFSQFVQLVLMIDFFWYYYMAVKNATPLVLPQHSGM 358
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|224002334|ref|XP_002290839.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974261|gb|EED92591.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 294.278 bits (752), Expect = 1.875e-95 Identity = 144/264 (54.55%), Postives = 188/264 (71.21%), Query Frame = 0
Query: 82 LAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAG 345
+ W GF SL V+ ++S GDFSF+MTYGA +R FGFG+L VK + ++ ATGVS KTLQLY LVFFFRLTSII GYLPYDKSGDW YH +E L+L +++ V F +Y D FG ++VP GA VYLAVP + LAV HP LNS F++D W ++MYLESVA++PQL+MFQKQ S VVE+L H+V A GF RV++ +FW+ SYHEL +GSK+ G L +QF+ ++LM+DFF+YY ++V++ PL LP G
Sbjct: 11 IMWAGFFTASLFVYFMMSGGDFSFLMTYGAMSRMFGFGILNVKTFMSKRATGVSVKTLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHVIEILALVFTASALWGCMVPFKQTYQADQDKFGEMNVPPGAGA-VYLAVPVMLLAVFVHPNLNSDFVSDVAWTYAMYLESVALVPQLFMFQKQQSGVVELLTAHFVAALGFGRVMEFMFWVYSYHELATSAGSKLPGYLALFSQFMQLVLMLDFFWYYYLAVKNATPLVLPSHG 273
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|298710843|emb|CBJ26352.1| (er lumen protein retaining receptor 1 [Ectocarpus siliculosus]) HSP 1 Score: 293.893 bits (751), Expect = 3.220e-95 Identity = 150/285 (52.63%), Postives = 198/285 (69.47%), Query Frame = 0
Query: 58 KGGNVNMQLDRYLRLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLP 342
+GG+ NM + + K + AL W GF S VV+ L SDGDFSF+MT+ +F R FGF +L + + A GVS K+LQLYA+VF RL S++ GYLPYD+SGD+ YH E SL L + + L+ +F +Y + DSFG LHVP +G L Y+ VPCL LA++ HP LN +FL+DT W FSMYLES+A++PQL+MFQKQ+ +VEVL+ H FA G ARVLDM+FWM SY EL H+GS VG+FVL +QF+H+++M DFFYYY ISV++G +QLP
Sbjct: 8 RGGSSNMVMGT----VRKQHMNIAL-WFGFFTASFVVFYLFSDGDFSFLMTFASFTRGFGFAVLLGLMLAKKHARGVSMKSLQLYAVVFASRLVSVLQHEGYLPYDRSGDFVYHGAEIASLALAVGCVVLISTKFKSTYQQDVDSFGALHVPTEWGTL-YIFVPCLLLAIVMHPNLNKNFLSDTAWTFSMYLESMAIVPQLFMFQKQAKGIVEVLVTHSTFALGLARVLDMVFWMFSYKELT-HAGSNSVGMFVLFSQFVHVVIMGDFFYYYAISVKTGNMMQLP 285
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|219112663|ref|XP_002178083.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410968|gb|EEC50897.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 288.886 bits (738), Expect = 8.836e-94 Identity = 137/246 (55.69%), Postives = 179/246 (72.76%), Query Frame = 0
Query: 84 WVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYY 329
W GF +SLVV+ ++S GDFSF+MTYGA +R FGFG+L VK + + A+GVS KTLQLY LVFFFRLTSII GYLPYDKSGDW YHF+E +L ++Y V F +Y + D FG +VP GA +YLA P L +A+L HP LN+ F++DT W ++MYLES A++PQLYMFQKQ+S VVE+L H+V A GF R+++ FW+ SYHEL + SGSK+ G L +QF+ ++LM+DFF+YY
Sbjct: 7 WAGFFTISLVVYSMLSGGDFSFLMTYGAMSRMFGFGILNVKTFKSERASGVSVKTLQLYCLVFFFRLTSIIRHEGYLPYDKSGDWLYHFIEIAALLFTASALYGCMVPFKGTYQKELDRFGEFNVPEGLGA-IYLAGPILIIAILIHPNLNADFISDTAWTYAMYLESTALMPQLYMFQKQASGVVELLTAHFVAALGFGRLMEFFFWIYSYHELANSSGSKLPGYLALFSQFVQLVLMIDFFWYY 251
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|676396829|ref|XP_009041692.1| (hypothetical protein AURANDRAFT_59616 [Aureococcus anophagefferens] >gi|323447705|gb|EGB03617.1| hypothetical protein AURANDRAFT_59616 [Aureococcus anophagefferens]) HSP 1 Score: 288.5 bits (737), Expect = 4.454e-93 Identity = 149/281 (53.02%), Postives = 199/281 (70.82%), Query Frame = 0
Query: 72 LLSKHRQSPALA-WVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNL-HVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQS--SQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGGLV 348
L R+S LA W+GFL+LS +V+ + SDGDFSF++TY + R FG LL K+ T++SA G+S KTL YA+VF RL SI+ GYLPYD+SGDW YH VE S L ++ LV V SY+E DSFG L +P S GALV + +P L A FHPGLN F++DT+W ++MYLES A+LPQL++FQKQS + V+ LIGH+V A GF+R+++M FWM+S+HEL D +G++ VGV VL TQ +H+++M DFFY+YL SV G+P+QLP A G+V
Sbjct: 13 LFEGTRKSSMLAPWLGFLMLSTLVYLVFSDGDFSFLLTYASLTRCFGITLLVAKMQTSQSAAGLSAKTLHCYAVVFASRLVSIMRHEGYLPYDRSGDWIYHCVEFASFGATLAALGLVHVVHGRSYEENNDSFGALPPLPGSLGALVVI-LPTLLFAACFHPGLNKDFISDTSWTYAMYLESFAILPQLFLFQKQSKANATVDYLIGHFVAALGFSRLVEMGFWMNSFHELADRNGNRYVGVLVLATQMVHLVIMGDFFYFYLRSVGRGMPIQLPTAAGMV 292
BLAST of EWM25670.1 vs. NCBI_GenBank
Match: gi|1173959363|gb|OQS05607.1| (hypothetical protein THRCLA_02290 [Thraustotheca clavata]) HSP 1 Score: 282.722 bits (722), Expect = 5.879e-91 Identity = 140/276 (50.72%), Postives = 187/276 (67.75%), Query Frame = 0
Query: 71 RLLSKHRQSPALAWVGFLLLSLVVWKLVSDGDFSFIMTYGAFARTFGFGLLAVKLWTARSATGVSFKTLQLYALVFFFRLTSIIPFSGYLPYDKSGDWFYHFVESLSLFLVLVSMYLVKVRFPHSYDERTDSFGNLHVPASFGALVYLAVPCLALAVLFHPGLNSHFLADTTWAFSMYLESVAMLPQLYMFQKQSSQVVEVLIGHWVFASGFARVLDMIFWMSSYHELVDHSGSKMVGVFVLLTQFIHIILMVDFFYYYLISVRSGLPLQLPRAGG 346
++KH+ + AL W GF ++ L + L SDGDFSF+MT+GAF R FGFG+L K T RS +G+S KTLQLYA VFFFRL SI+ + GYLPYD+SGDW Y F+E + L L + ++LV V+F SY+ R D+FG LHVP+ +G +VY+ VPC+ L +L HP LN ++ AD W ++Y+E+VA+LPQL+MFQK+ VE I HWV+A F L + FWM SYHEL + VG V+ Q H+I+M DF YYY S++ G P+ LP GG
Sbjct: 10 HFVTKHKGNIAL-WTGFFVIVLFAYHLFSDGDFSFLMTFGAFVRAFGFGILIFKSLTQRSVSGLSLKTLQLYAFVFFFRLCSILRYQGYLPYDRSGDWLYTFIEFVGLALTIGVIFLVTVQFRGSYEFRYDTFGFLHVPSEYG-IVYILVPCIFLGMLIHPNLNMNWFADVAWTIALYIEAVAILPQLFMFQKRGGGTVESCISHWVYALAFGSFLHLWFWMFSYHELGEKDAGHHVGYTVIFVQIGHMIMMGDFLYYYFKSLKDGGPMMLPTHGG 283 The following BLAST results are available for this feature:
BLAST of EWM25670.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|