EWM25672.1, cds5000 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25672.1
Unique Name	cds5000
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002464.1:927864..928020 -
Alignment location	CM002464.1:927638..927736 -
Alignment location	CM002464.1:927405..927478 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25672.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101185g3.10086.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:927864..928020 -
CM002464.1	supercontig	CM002464.1:927638..927736 -
CM002464.1	supercontig	CM002464.1:927405..927478 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM25672.1 vs. NCBI_GenBank
Match: gi|585107512|gb|EWM25672.1| (hypothetical protein Naga_101185g3 [Nannochloropsis gaditana])

HSP 1 Score: 219.55 bits (558), Expect = 1.766e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query:    1 MKDRCTGLHAHRIHSNLHAWTLCGLRDARGTSTCIGAESPFCVRQRYHGPSEGGPTPPMGRCSPLLAIRAGARRPPISRHVRGNASLIGLASSFSIVSLLGHESFLCIL 109
            MKDRCTGLHAHRIHSNLHAWTLCGLRDARGTSTCIGAESPFCVRQRYHGPSEGGPTPPMGRCSPLLAIRAGARRPPISRHVRGNASLIGLASSFSIVSLLGHESFLCIL
Sbjct:    1 MKDRCTGLHAHRIHSNLHAWTLCGLRDARGTSTCIGAESPFCVRQRYHGPSEGGPTPPMGRCSPLLAIRAGARRPPISRHVRGNASLIGLASSFSIVSLLGHESFLCIL 109

The following BLAST results are available for this feature:

BLAST of EWM25672.1 vs. NCBI_GenBank

BLAST of EWM25672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585107512\|gb\|EWM25672.1\|	1.766e-72	100.00	hypothetical protein Naga_101185g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5012	rna5012	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications