EWM25677.1, cds4994 (CDS) Nannochloropsis gaditana

Overview
NameEWM25677.1
Unique Namecds4994
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:913086..913214 +
Alignment locationCM002464.1:913427..913537 +
Alignment locationCM002464.1:913665..913811 +
Alignment locationCM002464.1:913964..914032 +
Alignment locationCM002464.1:914262..914378 +
Alignment locationCM002464.1:914511..914686 +
Alignment locationCM002464.1:914863..915511 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25677.1
Producteukaryotic translation initiation factor 3 subunit c
Orig transcript idgnl|cribi|Naga_100387g5.60.mrna
GeneEIF3c
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:913086..913214 +
CM002464.1supercontigCM002464.1:913427..913537 +
CM002464.1supercontigCM002464.1:913665..913811 +
CM002464.1supercontigCM002464.1:913964..914032 +
CM002464.1supercontigCM002464.1:914262..914378 +
CM002464.1supercontigCM002464.1:914511..914686 +
CM002464.1supercontigCM002464.1:914863..915511 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR008905EIF3C_N_dom
IPR000717PCI_dom
Homology
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|585107520|gb|EWM25676.1| (eukaryotic translation initiation factor 3 subunit c [Nannochloropsis gaditana] >gi|585107521|gb|EWM25677.1| eukaryotic translation initiation factor 3 subunit c [Nannochloropsis gaditana])

HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MVAMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVSSFHPFLPPSLPPSLYLLFFSLPFLLPLFPEPDFLLVSFYSADSSHLEPAVYTSLPHSLPPSLTPSLSPSFLPSLRLERLVGANEGMVQVKAGRGDGEKAGHDGEHHRGGGRGGGRGGGGDEGGWNQAGRGRGRGRGRGRGRGGGGGYRGGGYGGGGFNSFRSAGF 465
            MVAMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVSSFHPFLPPSLPPSLYLLFFSLPFLLPLFPEPDFLLVSFYSADSSHLEPAVYTSLPHSLPPSLTPSLSPSFLPSLRLERLVGANEGMVQVKAGRGDGEKAGHDGEHHRGGGRGGGRGGGGDEGGWNQAGRGRGRGRGRGRGRGGGGGYRGGGYGGGGFNSFRSAGF
Sbjct:    1 MVAMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVSSFHPFLPPSLPPSLYLLFFSLPFLLPLFPEPDFLLVSFYSADSSHLEPAVYTSLPHSLPPSLTPSLSPSFLPSLRLERLVGANEGMVQVKAGRGDGEKAGHDGEHHRGGGRGGGRGGGGDEGGWNQAGRGRGRGRGRGRGRGGGGGYRGGGYGGGGFNSFRSAGF 465          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|299472262|emb|CBN77232.1| (EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3 subunit c) [Ectocarpus siliculosus])

HSP 1 Score: 380.948 bits (977), Expect = 9.278e-119
Identity = 180/298 (60.40%), Postives = 228/298 (76.51%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVS 300
            AMLCHI+HHALHDRFH ARDL LMSH+  +I+  +   +IL+NR MV LGLCAFR+GLI +AH CL ++ S R KELLAQG+     Q D +PE EK ERRRQ P+HMHIN+DLLE CHLTSAMLLEVPN+A  E    R+RV+S  FR+ +  +  Q F GPPENIRDHV+AAA+ L  GDW+ C DLI   +VW+ IPG G  E V+ M+ +KI++E LRTYLFT+SP+Y+SLSLP LCEMF+M++  AHSIISKMM+  EL+ SWDQPTETVVL++ + + LQ+LAL++AD+  +
Sbjct:  629 AMLCHITHHALHDRFHPARDLLLMSHLQDNISQADISTQILYNRMMVTLGLCAFRKGLIHDAHDCLRDVCSSRVKELLAQGVQMNRFQ-DKNPEQEKAERRRQTPYHMHINLDLLECCHLTSAMLLEVPNMAQ-ESTELRRRVMSKHFRRYIDIFNRQVFTGPPENIRDHVIAAAKRLMEGDWKRCSDLILGLDVWNLIPGEGCAELVKVMVKEKIQVEALRTYLFTYSPHYESLSLPTLCEMFDMQKSKAHSIISKMMLSHELYGSWDQPTETVVLRKEDPNTLQLLALKFADKAAN 924          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|676385743|ref|XP_009036150.1| (hypothetical protein AURANDRAFT_25214, partial [Aureococcus anophagefferens] >gi|323453149|gb|EGB09021.1| hypothetical protein AURANDRAFT_25214, partial [Aureococcus anophagefferens])

HSP 1 Score: 365.155 bits (936), Expect = 7.412e-114
Identity = 178/300 (59.33%), Postives = 221/300 (73.67%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVD-RKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVS 300
            A+LCH++HHALH RF+ ARDL LMSH+ +D   + D E +IL+NR+MV LGLCAFR GLI +AH CL+EI S R KELLAQG+       D +PE EK ERRRQ P+HMHIN+DLLE CHLT+AMLLEVPN++   G     KR +S  FRK L  +  Q F GPPEN RDHVL AA+ALG GDW+TC DL+ + +VW  +PG G  +RV+AM+ DKIK E LRTYLF +S  YD+LSLPQLC+MF++ +  AH ++SKMMI  EL  +WDQPTET+VL R+E S LQ LAL YAD+  +
Sbjct:  507 ALLCHVAHHALHGRFYVARDLLLMSHL-QDTAYMSDVETQILYNRSMVMLGLCAFRNGLIHDAHACLAEICSSRVKELLAQGMQSARFS-DKNPEQEKAERRRQTPYHMHINLDLLECCHLTAAMLLEVPNMSVEAGGAGGHKRPISRHFRKHLDIFNRQVFTGPPENTRDHVLCAAKALGVGDWKTCADLVLRLDVWALVPGAGEGDRVKAMIEDKIKAEALRTYLFAYSSAYDALSLPQLCDMFQLPKNVAHGLVSKMMINRELKGAWDQPTETIVLHRLEPSPLQALALHYADKAAA 804          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|1072234703|gb|OEU19432.1| (eIF-3c_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 353.984 bits (907), Expect = 1.791e-109
Identity = 173/302 (57.28%), Postives = 219/302 (72.52%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLA--TLEGRVDRKRV--VSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCV 299
            + +CH+ HHALHDRF E RDL LMSHI   I D+ED    I+FNR MV LG+CAFR+G I EAHQCL+EI S R +ELLAQG+S   +  D  PE EK E+RRQ+P++ HIN+DLLE CHL SAMLLE+PN+A  ++ G VD +R+  +S  FRK    Y  Q F GPPE  RDHV+ A+ AL  GDW+TC DL    EVW  +PG G+ E ++ ML  KIK+EGLRTYLF FSP Y+SLSL QLC MFEM +   HS++SKM+I  EL ASWDQPTET+VL++ + S +Q++ALQY+++ V
Sbjct:  502 STICHVYHHALHDRFIEGRDLLLMSHIQEVIYDVEDITTMIMFNRMMVQLGMCAFREGRIWEAHQCLTEICSSRVRELLAQGMSMGRYS-DKTPEQEKAEKRRQVPYYQHINLDLLEGCHLISAMLLEIPNIAAASVSGGVDSRRLRPISRSFRKYQDIYSHQVFTGPPEQTRDHVMRASTALSKGDWKTCVDLCTCLEVWDLVPGEGSAEGIKTMLASKIKLEGLRTYLFAFSPQYESLSLSQLCAMFEMSKNEVHSVVSKMIINRELLASWDQPTETIVLRKADPSPVQLMALQYSEKAV 802          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|1210521501|dbj|GAX19491.1| (translation initiation factor 3 subunit C [Fistulifera solaris])

HSP 1 Score: 349.747 bits (896), Expect = 5.827e-107
Identity = 168/300 (56.00%), Postives = 219/300 (73.00%), Query Frame = 0
Query:    1 MVAMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISR-PFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRC 298
            M A++CH+ HHA+HDRF +ARDL LMSH+   I+D  D    I+FNR MV++G+CAFR G I +AHQCL++I S R +ELLAQG++   F+++    E EK E+RRQ+P+H HIN+DLLE CHL SAMLLEVPN+A  E    R RV+S  FRK   QY  Q F GPPE  RD V+ AA+ L  G+W+TC +L+   +VW  +PG  A +++  ML +K+K+EGLRTYLF FS  YDS+SL QLC MFEM +   HS++SKMMI  EL+ASWDQPTET+VLQRVE + LQV+ALQ+A++ 
Sbjct:  631 MRAVICHVYHHAIHDRFLDARDLLLMSHLQDKIHDCGDTSTMIMFNRMMVNIGMCAFRLGRIYDAHQCLADICSVRVRELLAQGVTMGRFNEKS--AEQEKAEKRRQVPYHQHINLDLLEACHLISAMLLEVPNMAG-EASNRRGRVISRTFRKYHDQYNHQVFTGPPEQTRDFVMCAAKHLMKGEWQTCAELVSNLDVWQLVPGEDAAKKIGKMLTEKVKLEGLRTYLFAFSTQYDSMSLAQLCAMFEMTKNEVHSVVSKMMINRELYASWDQPTETIVLQRVEPTALQVMALQFAEKA 927          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|219125635|ref|XP_002183081.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405356|gb|EEC45299.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 342.813 bits (878), Expect = 6.721e-107
Identity = 167/301 (55.48%), Postives = 211/301 (70.10%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATL----EGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRC 298
            A++C I H ALHD F +ARDL LMSH+   I ++ D    ++FNR MV LG+CAFR G I +AHQCLSEI S R +ELLAQG++      D   E EK E+RRQ+P+H HIN+DLLE CHL SAMLLEVPN+A +    +    R RV+S  FRK   QY  Q F GPPE  RD V+ A+ AL  GDW+TC DL    +VW  +PG G  E++  ML +KIK+E LRTYLF+FS  YDSLSL QLC MFEM +   HS++SKM+I  EL+ASWDQPTET+VL++VE + LQV+ALQ+A++ 
Sbjct:  425 AVICQIYHLALHDHFLDARDLLLMSHLQETIYNVGDVSTMVMFNRMMVTLGMCAFRLGRISDAHQCLSEICSNRVRELLAQGVNTGRFS-DKTAEQEKAEKRRQIPYHQHINMDLLEACHLISAMLLEVPNMAQMAIDGDNGTRRNRVISRSFRKFHDQYNHQVFTGPPEQTRDFVMRASMALKKGDWKTCSDLTTNLDVWQLVPGEGVAEQIGQMLTEKIKLEALRTYLFSFSAQYDSLSLSQLCGMFEMSKSEVHSVVSKMIINRELYASWDQPTETIVLRKVEPTSLQVMALQFAEKA 724          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|1210524778|dbj|GAX16486.1| (translation initiation factor 3 subunit C [Fistulifera solaris])

HSP 1 Score: 348.977 bits (894), Expect = 3.151e-106
Identity = 170/302 (56.29%), Postives = 220/302 (72.85%), Query Frame = 0
Query:    1 MVAMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISR-PFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVD--RKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRC 298
            M A++CH+ HHA+HDRF +ARDL LMSH+   I+D  D    I+FNR MV++G+CAFR G I +AHQCL++I S R +ELLAQG++   F+++    E EK E+RRQ+P+H HIN+DLLE CHL SAMLLEVPN+A   G V   R RVVS  FRK   QY  Q F GPPE  RD V+ AA+ L  G+W+TC +L+   +VW  +PG  A +++  ML +K+K+EGLRTYLF FS  YDS+SL QLC MFEM +   HS++SKMMI  EL+ASWDQPTET+VLQRVE + LQV+ALQ+A++ 
Sbjct:  687 MRAVICHVYHHAIHDRFLDARDLLLMSHLQDKIHDCGDTSTMIMFNRMMVNIGMCAFRLGRIYDAHQCLADICSVRVRELLAQGVTMGRFNEKS--AEQEKAEKRRQVPYHQHINLDLLEACHLISAMLLEVPNMA---GEVSNRRGRVVSRTFRKYHDQYNHQVFTGPPEQTRDFVMCAAKHLMKGEWQTCAELVSNLDVWQLVPGEDAAKKIGKMLTEKVKLEGLRTYLFAFSTQYDSMSLAQLCAMFEMTKNEVHSVVSKMMINRELYASWDQPTETIVLQRVEPTALQVMALQFAEKA 983          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|669139918|ref|XP_008605527.1| (hypothetical protein SDRG_01760 [Saprolegnia diclina VS20] >gi|530742441|gb|EQC40683.1| hypothetical protein SDRG_01760 [Saprolegnia diclina VS20])

HSP 1 Score: 347.051 bits (889), Expect = 3.294e-106
Identity = 164/296 (55.41%), Postives = 219/296 (73.99%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISS-KRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADR 297
            AMLCHI HHA+HDRFHEARDL LMSH+   I   +   +ILFNR M  LGLCAFR GL+ EAH CLSEI +  + KELLAQG++  F  ++ DP+ E+ ERRRQ+P+HMHIN++LLELCHLTSAMLLEVPN+  L    DR+RV+S  FRK+L+ ++   FAGPPEN RDH+++AA+A+  G+W+  ++LI    VW   PG G  ERV+AM+  KI++E LR+YL  FS  Y++L+L QLC MF ++  T HS++SKMMI  EL  +WDQ ++++VL +VE + LQ+LALQ +D+
Sbjct:  608 AMLCHIYHHAVHDRFHEARDLLLMSHLQETIVHTDIATQILFNRMMAQLGLCAFRSGLMWEAHACLSEICTGSKTKELLAQGLA-SFRHQERDPDQERLERRRQVPYHMHINLELLELCHLTSAMLLEVPNM-VLSRTQDRRRVISKAFRKLLEFHDRLVFAGPPENTRDHIVSAAKAMAQGNWQYSKELICGLAVWDLFPGAGVSERVKAMVQQKIQVEALRSYLMAFSDAYEALNLAQLCAMFGLDSKTVHSVVSKMMINEELQGAWDQGSQSIVLHKVERTRLQLLALQLSDK 901          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|813150959|ref|XP_012201126.1| (hypothetical protein SPRG_06357 [Saprolegnia parasitica CBS 223.65] >gi|641534354|gb|KDO28307.1| hypothetical protein SPRG_06357 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 346.28 bits (887), Expect = 4.524e-106
Identity = 164/296 (55.41%), Postives = 219/296 (73.99%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLEDEMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISS-KRPKELLAQGISRPFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATLEGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADR 297
            AMLCHI HHA+HDRFHEARDL LMSH+   I   +   +ILFNR M  LGLCAFR GL+ EAH CLSEI +  + KELLAQG++  F  ++ DP+ E+ ERRRQ+P+HMHIN++LLELCHLTSAMLLEVPN+  L    DR+RV+S  FRK+L+ ++   FAGPPEN RDH+++AA+A+  G+W+  ++LI    VW   PG G  ERV+AM+  KI++E LR+YL  FS  Y++L+L QLC MF ++  T HS++SKMMI  EL  +WDQ ++++VL +VE + LQ+LALQ +D+
Sbjct:  598 AMLCHIYHHAVHDRFHEARDLLLMSHLQETIVHTDIATQILFNRMMAQLGLCAFRSGLMWEAHACLSEICTGSKTKELLAQGLA-SFRHQERDPDQERLERRRQVPYHMHINLELLELCHLTSAMLLEVPNM-VLSRTQDRRRVISKAFRKLLEFHDRLVFAGPPENTRDHIVSAAKAMAQGNWQYSKELICGLAVWDLFPGAGVSERVKAMVQHKIQVEALRSYLMAFSDAYEALNLAQLCAMFGLDSKTVHSVVSKMMINEELQGAWDQGSQSIVLHKVERTRLQLLALQLSDK 891          
BLAST of EWM25677.1 vs. NCBI_GenBank
Match: gi|224002430|ref|XP_002290887.1| (eukaryotic translation initiation factor 3 subunit 8, partial [Thalassiosira pseudonana CCMP1335] >gi|220974309|gb|EED92639.1| eukaryotic translation initiation factor 3 subunit 8, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 338.961 bits (868), Expect = 2.100e-105
Identity = 172/302 (56.95%), Postives = 211/302 (69.87%), Query Frame = 0
Query:    3 AMLCHISHHALHDRFHEARDLYLMSHIARDINDLED-EMRILFNRTMVHLGLCAFRQGLIQEAHQCLSEISSKRPKELLAQGISR-PFHQRDLDPEAEKEERRRQLPFHMHINIDLLELCHLTSAMLLEVPNLATL--EGRVDRKRVVSGFFRKILQQYETQTFAGPPENIRDHVLAAARALGSGDWRTCRDLIFKPEVWHRIPGPGAVERVQAMLLDKIKMEGLRTYLFTFSPYYDSLSLPQLCEMFEMERGTAHSIISKMMIYGELHASWDQPTETVVLQRVEASHLQVLALQYADRCVS 300
            AMLCHI +H+LHDRF EARDL LMSH+   I    D    ILFNR MV LGL AFR G I +A+QCLS+I S R +ELLAQG+S   F+  D  PE EK E+RRQ+P+H HIN+DLLE CHL SAM+LEVPN+A    +    R RV+S  FRK    Y+ Q F GPPE  RD V+ A +AL  GDW+ C DL+   EVW  +PG  A E ++ ML +KIK  GLRTYL  FS  YDSLSL QLCEMF+M +   HS++SKMMI  +L ASWDQPTET+V+++V+ S LQVLALQ+A++  S
Sbjct:  423 AMLCHIYYHSLHDRFLEARDLLLMSHLQETIPVTGDISTMILFNRMMVTLGLAAFRLGKIWDANQCLSDICSGRVRELLAQGVSTGRFN--DKSPEQEKAEKRRQIPYHQHINLDLLEACHLISAMMLEVPNMAAAGADENARRARVISRTFRKYHDIYDRQVFTGPPEQTRDFVMTATKALMKGDWKKCSDLLNSLEVWALLPGDNADEEIKTMLGEKIKQTGLRTYLLAFSSQYDSLSLSQLCEMFDMGKNDVHSVVSKMMINRDLIASWDQPTETIVMRKVDPSALQVLALQFAEKAAS 722          
The following BLAST results are available for this feature:
BLAST of EWM25677.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107520|gb|EWM25676.1|0.000e+0100.00eukaryotic translation initiation factor 3 subunit... [more]
gi|299472262|emb|CBN77232.1|9.278e-11960.40EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3 ... [more]
gi|676385743|ref|XP_009036150.1|7.412e-11459.33hypothetical protein AURANDRAFT_25214, partial [Au... [more]
gi|1072234703|gb|OEU19432.1|1.791e-10957.28eIF-3c_N-domain-containing protein [Fragilariopsis... [more]
gi|1210521501|dbj|GAX19491.1|5.827e-10756.00translation initiation factor 3 subunit C [Fistuli... [more]
gi|219125635|ref|XP_002183081.1|6.721e-10755.48predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210524778|dbj|GAX16486.1|3.151e-10656.29translation initiation factor 3 subunit C [Fistuli... [more]
gi|669139918|ref|XP_008605527.1|3.294e-10655.41hypothetical protein SDRG_01760 [Saprolegnia dicli... [more]
gi|813150959|ref|XP_012201126.1|4.524e-10655.41hypothetical protein SPRG_06357 [Saprolegnia paras... [more]
gi|224002430|ref|XP_002290887.1|2.100e-10556.95eukaryotic translation initiation factor 3 subunit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5006rna5006Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications