EWM25707.1, cds4967 (CDS) Nannochloropsis gaditana

Overview
NameEWM25707.1
Unique Namecds4967
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:825446..826123 +
Alignment locationCM002464.1:826414..826904 +
Alignment locationCM002464.1:827021..828472 +
Alignment locationCM002464.1:828688..829156 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25707.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100333g4.1590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:825446..826123 +
CM002464.1supercontigCM002464.1:826414..826904 +
CM002464.1supercontigCM002464.1:827021..828472 +
CM002464.1supercontigCM002464.1:828688..829156 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
[Close]
BLAST of EWM25707.1 vs. NCBI_GenBank
Match: gi|585107565|gb|EWM25707.1| (hypothetical protein Naga_100333g4 [Nannochloropsis gaditana])

HSP 1 Score: 2121.67 bits (5496), Expect = 0.000e+0
Identity = 1029/1029 (100.00%), Postives = 1029/1029 (100.00%), Query Frame = 0 
Query:    1 MRRSAYYYNNLDKLSHRGKSSGPGRAVKDNLLPSSQAAPASTAAVASTSAPRPPIHFELTKGVAGSRKTQHAVSAAFQAGSTGAMKNILFLVKVGSNAQEIRSRLETQMGLEFKRHKLTNHFVARDNRSPMPDAEVVDGGERERGRGRGVTRRISAGATASYWVASFDAFVDCQLRTHPSMQEKLKTRGANFEWKRDALLRLIRAGAHGGFCLKDGALADFVVVDEAQDLREEDMEIVSRLVESEHARDGALRRVLVVGDVEQTVFSDVLTGRGQGHPMDCLHRWMPSVPVHTRRLDINYRCPHAHVSFNNLSVPRNATRGEGLVRPSPEMAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLEVEDCRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS 1029
            MRRSAYYYNNLDKLSHRGKSSGPGRAVKDNLLPSSQAAPASTAAVASTSAPRPPIHFELTKGVAGSRKTQHAVSAAFQAGSTGAMKNILFLVKVGSNAQEIRSRLETQMGLEFKRHKLTNHFVARDNRSPMPDAEVVDGGERERGRGRGVTRRISAGATASYWVASFDAFVDCQLRTHPSMQEKLKTRGANFEWKRDALLRLIRAGAHGGFCLKDGALADFVVVDEAQDLREEDMEIVSRLVESEHARDGALRRVLVVGDVEQTVFSDVLTGRGQGHPMDCLHRWMPSVPVHTRRLDINYRCPHAHVSFNNLSVPRNATRGEGLVRPSPEMAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLEVEDCRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS
Sbjct:    1 MRRSAYYYNNLDKLSHRGKSSGPGRAVKDNLLPSSQAAPASTAAVASTSAPRPPIHFELTKGVAGSRKTQHAVSAAFQAGSTGAMKNILFLVKVGSNAQEIRSRLETQMGLEFKRHKLTNHFVARDNRSPMPDAEVVDGGERERGRGRGVTRRISAGATASYWVASFDAFVDCQLRTHPSMQEKLKTRGANFEWKRDALLRLIRAGAHGGFCLKDGALADFVVVDEAQDLREEDMEIVSRLVESEHARDGALRRVLVVGDVEQTVFSDVLTGRGQGHPMDCLHRWMPSVPVHTRRLDINYRCPHAHVSFNNLSVPRNATRGEGLVRPSPEMAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLEVEDCRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS 1029
[Close]
BLAST of EWM25707.1 vs. NCBI_GenBank
Match: gi|553182485|ref|XP_005853736.1| (rep helicase [Nannochloropsis gaditana CCMP526] >gi|422295327|gb|EKU22626.1| rep helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1433.7 bits (3710), Expect = 0.000e+0
Identity = 697/699 (99.71%), Postives = 698/699 (99.86%), Query Frame = 0 
Query:  331 MAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLEVEDCRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS 1029
            MAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLL+VED RTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS
Sbjct:    1 MAERAVGGQDKPYLFTYVQSSSSVQNYDAYRTACRIAEIVLTLLRTMEGLRLRDIAITSRFVNVNLILLQLEDVLERALAEAGYAPSDGSGCVHLFRTKVTDRKSINWEEAGERLVMGSLTAFKGKDWRAVILLDCTEGVLPSKSSVHTQKELVDRSLFNVGTTRSKEVLLIGFDAKAPSRYLSHVHERLHEGAQLEWEASTIETAGPYAAIYATRRNDSKSLAEGVVEWKEGRNRTVDVPFKYYWSVTDSTDEIQTVDDMLLGEESGGEDGAEEEEGPYAWKGFDRFGTRLSPPAWFKQDETGRLITGVMGEALLARELHVKGRLSKRADATLLWPVVEKLGGRAGGRKGRPVVFTECPKVLNLAVDYHLNELWAYDETEQWRQALEMLLEDHGHEAGASRAFFLELLEGMPRCVLHAAYRGPIQTFAPLLDYRIPSAELPVEAVWNCAVLYQDALSYGLRQPSLVKRLLKVEDSRTPKDLSKLLAGLSENVIAYLDFKQARNSTTFAQGNGVSLLQKEVAETELEKRGFCRQRDAHVFAEGWTYGLNGRIDFYDENRKRIVEVKVSDTDGVLPSHEVQTLLYALLYGNGWKPTRAFEIVNLLKGMRYKRVLRRKVKLWNCLRRAFKKLDFDDEMIETLGRAYGPQYWEKRDEEEGSGPEKGLIEESIDIDSKISRDIDCEAVQDLQPRKVKVLQEAS 699
The following BLAST results are available for this feature:
BLAST of EWM25707.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107565|gb|EWM25707.1|0.000e+0100.00hypothetical protein Naga_100333g4 [Nannochloropsi... [more]
gi|553182485|ref|XP_005853736.1|0.000e+099.71rep helicase [Nannochloropsis gaditana CCMP526] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4979rna4979Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications