EWM25717.1, cds4958 (CDS) Nannochloropsis gaditana

Overview
NameEWM25717.1
Unique Namecds4958
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:801380..801466 +
Alignment locationCM002464.1:801715..801863 +
Alignment locationCM002464.1:801971..802442 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25717.1
Productsugar nucleotide epimerase
Orig transcript idgnl|cribi|Naga_100154g10.6615.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:801380..801466 +
CM002464.1supercontigCM002464.1:801715..801863 +
CM002464.1supercontigCM002464.1:801971..802442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011038Calycin-like
IPR012674Calycin
Homology
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|585107577|gb|EWM25717.1| (sugar nucleotide epimerase [Nannochloropsis gaditana])

HSP 1 Score: 491.115 bits (1263), Expect = 8.997e-176
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MRTTVSASIYAILLTATAAPVLADFSFDKAWFHGGDGGACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTYRPSSEPAGLRT 235
            MRTTVSASIYAILLTATAAPVLADFSFDKAWFHGGDGGACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTYRPSSEPAGLRT
Sbjct:    1 MRTTVSASIYAILLTATAAPVLADFSFDKAWFHGGDGGACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTYRPSSEPAGLRT 235          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|1129200395|gb|OLQ03644.1| (hypothetical protein AK812_SmicGene13373 [Symbiodinium microadriaticum])

HSP 1 Score: 161.77 bits (408), Expect = 8.556e-42
Identity = 87/180 (48.33%), Postives = 115/180 (63.89%), Query Frame = 0
Query:   50 NLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPN-----NVAVHNYANEGGVNNIIREA--DLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGC 222
            +L  + SKRWYI QQM T+   P  + N CVYAEY ++        +VAVHN+A E    + + ++   +CA V D  +  G+L V PCFL  A   L GPY++V YDE  GYALISGG+PT+P ++G C T  G N++GLWIF+R   RDEAL+QK+R IA +KGFD+ VL DV    C
Sbjct: 1924 DLDSFISKRWYIQQQMETKY-LPKSQ-NRCVYAEYKLEPKKTLLGYDVAVHNHAEEVAPPHTVHDSGSKICAKVVDKAH--GKLEVAPCFLPSA---LAGPYWVVDYDEGAGYALISGGAPTVPAEEG-CKTGSGTNDSGLWIFTREQKRDEALVQKVRAIAAQKGFDLSVLNDVDQSDC 2095          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|1129200823|gb|OLQ03971.1| (hypothetical protein AK812_SmicGene12987 [Symbiodinium microadriaticum])

HSP 1 Score: 160.614 bits (405), Expect = 1.089e-41
Identity = 87/180 (48.33%), Postives = 114/180 (63.33%), Query Frame = 0
Query:   50 NLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPN-----NVAVHNYANEGGVNNIIREA--DLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGC 222
            +L  + SKRWYI QQM T+   P  + N CVYAEY ++        +VAVHN+A E    + + ++   +CA V D     G+L V PCFL  A   L GPY++V YDE  GYALISGG+PT+P ++G C T  G N++GLWIF+R   RDEAL+QK+R IA +KGFD+ VL DV    C
Sbjct:  198 DLDSFISKRWYIQQQMETKY-LPKSQ-NRCVYAEYKLEHKKTLLGYDVAVHNHAEEVAPPHTVHDSGSKICAKVVDKAR--GKLEVAPCFLPSA---LAGPYWVVDYDEGAGYALISGGAPTLPAEEG-CKTGSGTNDSGLWIFTREQKRDEALVQKVRAIAAQKGFDLSVLNDVDQSDC 369          

HSP 2 Score: 160.229 bits (404), Expect = 1.302e-41
Identity = 87/180 (48.33%), Postives = 114/180 (63.33%), Query Frame = 0
Query:   50 NLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPN-----NVAVHNYANEGGVNNIIREA--DLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGC 222
            +L  + SKRWYI QQM T+   P  + N CVYAEY ++        +VAVHN+A E    + + ++   +CA V D     G+L V PCFL  A   L GPY++V YDE  GYALISGG+PT+P ++G C T  G N++GLWIF+R   RDEAL+QK+R IA +KGFD+ VL DV    C
Sbjct:  585 DLDSFISKRWYIQQQMETKY-LPKSQ-NRCVYAEYKLEPKKTLLGYDVAVHNHAEEVAPPHTVHDSGSKICAKVVDKAR--GKLEVAPCFLPSA---LAGPYWVVDYDEGAGYALISGGAPTLPAEEG-CKTGSGTNDSGLWIFTREQKRDEALVQKVRAIAAQKGFDLSVLNDVDQSDC 756          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|612386437|ref|XP_007508739.1| (predicted protein [Bathycoccus prasinos] >gi|412992112|emb|CCO19825.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 129.798 bits (325), Expect = 1.746e-33
Identity = 79/202 (39.11%), Postives = 107/202 (52.97%), Query Frame = 0
Query:   26 SFDKAWFHGGDGGA--CKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREADLCATVRDPEND-PGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTY 224
            SF      GG G    C  V   + V+++ YASK WY+  Q+  +       +  CV A YT+ SP  + V N+A +G V       D+      P+ D   +L VGP   +F  R LYG Y+IVAY+E EG+A+ISGG PTI   DGLCTT+ G  N GLW+F+R     E L++ ++  A   G D  +L  VQ  GC Y
Sbjct:   32 SFVTPALAGGLGRERRCPPVPTVSDVSIEAYASKPWYVQAQLPNRYQPVENLF--CVRAVYTVTSPTTLDVFNFARKGSVEGEPSNEDMVLNAFIPDVDVKSKLKVGP---KFVPRALYGDYWIVAYEEEEGWAIISGGQPTIFVSDGLCTTESG--NQGLWLFTREKEVSEELVETMKKKANALGIDTSMLVTVQQTGCEY 226          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|157093173|gb|ABV22241.1| (lipocalin-like protein [Karlodinium veneficum])

HSP 1 Score: 125.561 bits (314), Expect = 5.870e-32
Identity = 74/178 (41.57%), Postives = 101/178 (56.74%), Query Frame = 0
Query:   50 NLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTI-KSPN----NVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGC 222
            +L+ Y S +WYI QQM         ++ +CV AEY++  SP     N+ V N+A       +     +CA V +     G+L V PCFL      L GPY+IVA+D+  G+AL+SGG+P     +G C T  G N++GLWIF+R   RD+AL+QK+RGIA  KGFDV V  D     C
Sbjct:   40 DLKWYTSSKWYIQQQMIISY--LPADYLNCVTAEYSLLDSPTLLGYNIKVMNHAENKDGKPLGPLTTICAKVVN--ETAGKLEVSPCFLP---TFLAGPYWIVAFDKEAGWALVSGGAPKNQGTNG-CQTGTGTNDSGLWIFTRKPDRDDALLQKVRGIAAAKGFDVSVFRDTDESTC 209          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|303283094|ref|XP_003060838.1| (hypothetical protein MICPUCDRAFT_41142 [Micromonas pusilla CCMP1545] >gi|226457189|gb|EEH54488.1| hypothetical protein MICPUCDRAFT_41142 [Micromonas pusilla CCMP1545])

HSP 1 Score: 120.553 bits (301), Expect = 9.456e-30
Identity = 85/213 (39.91%), Postives = 115/213 (53.99%), Query Frame = 0
Query:   34 GGDGGA----CKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNNVAVHNYANEGGVNNIIREAD---LCATVRDPENDP--GRLAVGPCFLEFANRLLYGPYFIVAYDEAE----------GY--ALISGGSPTIPT-KDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTY 224
            GG  GA    C  V   +P +L  YA+  WY+ QQ   +   P  E   CV A Y +   + V V+N AN GGV+   + +D   L A +    +D    +L VGP FL    R LYGPY++VA   +E          GY  A++SGG PTIPT  DG C T  G N++G W+F+R  +  EA ++++R +A EKGFD+  LE V HEGC Y
Sbjct:   32 GGRRGAAAEPCAPVSTASPFDLDAYAAHAWYVQQQQVVRY-QPR-ESLYCVRASYRVNDDDAVDVYNTANVGGVDGPPQNSDGFRLRAVIDPDADDDAPSKLRVGPRFLP---RFLYGPYWVVAVSPSEPRDESDPVGPGYDWAIVSGGQPTIPTGDDGKCRTGSGQNDSGFWLFTREKIASEATLEEMRAVASEKGFDLSALEPVTHEGCEY 239          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|1129202794|gb|OLQ05539.1| (hypothetical protein AK812_SmicGene11295 [Symbiodinium microadriaticum])

HSP 1 Score: 124.405 bits (311), Expect = 7.612e-29
Identity = 77/181 (42.54%), Postives = 96/181 (53.04%), Query Frame = 0
Query:   47 NPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPN-----NVAVHNYANEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGC 222
            N  +L  + SKRWYI QQM T+   P  + N CVYAEY ++        +VAVHN+A EG V                  D  R                G   ++ YDEA GYALISGG+PT+P + G C T  G N +GLWIF+R   RDEAL+QK+R IA +KGFD+ VL DV    C
Sbjct:  198 NNFDLDSFISKRWYIQQQMETKY-LPKTQ-NRCVYAEYKLQQKKTFWGYDVAVHNHA-EGVV------------------DKAR----------------GKLEVLDYDEAAGYALISGGAPTLPAEAG-CMTGSGTNGSGLWIFTREQKRDEALVQKVRAIAAQKGFDLSVLNDVDQSAC 340          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|1072225451|gb|OEU10198.1| (apolipo protein D [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 115.161 bits (287), Expect = 1.036e-27
Identity = 78/209 (37.32%), Postives = 108/209 (51.67%), Query Frame = 0
Query:   39 ACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSPNN-----VAVHNYA--NEGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAY----DEAEGYALISGGSP--TIPTKD--------GLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTYRP 226
             C TV   +  NL +YAS  W++ QQ A     P  + N CV A+Y++K  +N     + V NY   ++GG +      DLCA     ++ P +L V PCFL    ++  GPY+IVAY    D  +GYAL+SGG P   +P +           C T  G NN+GLWI +R       ++Q++R IA +KGF   VL DV H  CT  P
Sbjct:   27 TCLTVTTVDNFNLTQYASAPWFVQQQ-AVNTYTP-LDLNRCVTAQYSLKEHSNFWGYTIDVFNYGVKSDGGQST---GGDLCADYN--KDIPSQLKVAPCFLP---KIFAGPYWIVAYQEETDNNDGYALVSGGQPRNLVPNESTCGENGTAACCKTGDGVNNSGLWILTRQPTPSNDILQEVRTIAQQKGFSTSVLFDVDHTNCTDIP 225          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|922858774|gb|KOO26867.1| (apolipoprotein d lipocalin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 111.694 bits (278), Expect = 7.830e-27
Identity = 75/197 (38.07%), Postives = 98/197 (49.75%), Query Frame = 0
Query:   39 ACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYT--------IKSPNNVAVHNYAN---EGGVNNIIREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAYDEAEGYALISGGSPTIPTKDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTY 224
            AC T+     +NL E+ +K WYI QQ  T+    N  +  CV A Y          K P  V V+NYAN     G N   R   LCA   +  +D  +LAV PCFL  A     GPY+++A      +A++SGG PT    DG  T Q G N++GLW+FSR+ V  +  I  ++ I   KG     L  V HEGC Y
Sbjct:   13 ACPTIHTLGQLNLTEWTAKSWYIQQQQVTEYLQRNTFY--CVTATYNQEGATVPGFKGPV-VTVYNYANLNKVNGPNQNARNMTLCARAVN-SSDYSQLAVAPCFLPNAAA---GPYWVIARAPDYAWAIVSGGQPTEQFDDGCTTKQTGINDSGLWLFSRTPVAPDEQITTMKSILEAKGIARSQLLPVAHEGCVY 202          
BLAST of EWM25717.1 vs. NCBI_GenBank
Match: gi|255078300|ref|XP_002502730.1| (hypothetical protein MICPUN_59023 [Micromonas commoda] >gi|226517996|gb|ACO63988.1| hypothetical protein MICPUN_59023 [Micromonas commoda])

HSP 1 Score: 112.464 bits (280), Expect = 1.072e-26
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 0
Query:   39 ACKTVVPQNPVNLQEYASKRWYIHQQMATQAGNPNGEWNSCVYAEYTIKSP-NNVAVHNYANEGGVNNI---IREADLCATVRDPENDPGRLAVGPCFLEFANRLLYGPYFIVAY-----DEAEGY--ALISGGSPTIPT--KDGLCTTQRGFNNAGLWIFSRSNVRDEALIQKLRGIAVEKGFDVDVLEDVQHEGCTY 224
            ACKTV     ++L+ YA+  WY+ +Q   +    +  +  CV A YT+    + V V N A  GGV+      R   L A + D +    +L VGP FL    R  YGPY+IVA      D   GY  A++SGG+PT  T  ++GLC+T    N++GLW+F+R       +++++R  A + GFD  VL+ V  EGC Y
Sbjct:   46 ACKTVNTVEGLDLRAYATHPWYVQEQQVVRYQPLDNFY--CVRARYTVDDAGDEVEVLNSARRGGVDGDDTNARGTRLRAVLEDKDASTSKLLVGPAFLP---RFTYGPYWIVAVSPDAPDPELGYEWAIVSGGAPTRLTDPENGLCSTGEDMNDSGLWLFTREPTVGADVVERMRATARDAGFDTSVLKPVTQEGCEY 239          
The following BLAST results are available for this feature:
BLAST of EWM25717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107577|gb|EWM25717.1|8.997e-176100.00sugar nucleotide epimerase [Nannochloropsis gadita... [more]
gi|1129200395|gb|OLQ03644.1|8.556e-4248.33hypothetical protein AK812_SmicGene13373 [Symbiodi... [more]
gi|1129200823|gb|OLQ03971.1|1.089e-4148.33hypothetical protein AK812_SmicGene12987 [Symbiodi... [more]
gi|612386437|ref|XP_007508739.1|1.746e-3339.11predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|157093173|gb|ABV22241.1|5.870e-3241.57lipocalin-like protein [Karlodinium veneficum][more]
gi|303283094|ref|XP_003060838.1|9.456e-3039.91hypothetical protein MICPUCDRAFT_41142 [Micromonas... [more]
gi|1129202794|gb|OLQ05539.1|7.612e-2942.54hypothetical protein AK812_SmicGene11295 [Symbiodi... [more]
gi|1072225451|gb|OEU10198.1|1.036e-2737.32apolipo protein D [Fragilariopsis cylindrus CCMP11... [more]
gi|922858774|gb|KOO26867.1|7.830e-2738.07apolipoprotein d lipocalin [Chrysochromulina sp. C... [more]
gi|255078300|ref|XP_002502730.1|1.072e-2636.68hypothetical protein MICPUN_59023 [Micromonas comm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4970rna4970Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications