EWM25729.1, cds4942 (CDS) Nannochloropsis gaditana

Overview
NameEWM25729.1
Unique Namecds4942
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:758632..758675 -
Alignment locationCM002464.1:758326..758360 -
Alignment locationCM002464.1:758209..758236 -
Alignment locationCM002464.1:757786..758106 -
Alignment locationCM002464.1:756356..757703 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25729.1
Productprotein prenyltransferase alpha subunit repeat containing 1
Orig transcript idgnl|cribi|Naga_100087g8.1109.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:758632..758675 -
CM002464.1supercontigCM002464.1:758326..758360 -
CM002464.1supercontigCM002464.1:758209..758236 -
CM002464.1supercontigCM002464.1:757786..758106 -
CM002464.1supercontigCM002464.1:756356..757703 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008318protein prenyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0018342protein prenylation
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a
Homology
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|585107591|gb|EWM25729.1| (protein prenyltransferase alpha subunit repeat containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 1206.43 bits (3120), Expect = 0.000e+0
Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 0
Query:    1 MCRARGGHNTPGNRRLWESTEEPWTAAACFLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLTLLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEGRAGLMWDVESRRRQRLLAWSFKCWVILRWENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLVRVGDR 591
            MCRARGGHNTPGNRRLWESTEEPWTAAACFLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLTLLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEGRAGLMWDVESRRRQRLLAWSFKCWVILRWENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLVRVGDR
Sbjct:    1 MCRARGGHNTPGNRRLWESTEEPWTAAACFLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLTLLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEGRAGLMWDVESRRRQRLLAWSFKCWVILRWENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLVRVGDR 591          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|762141206|ref|XP_011453785.1| (PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 [Crassostrea gigas] >gi|405974775|gb|EKC39397.1| prenyltransferase alpha subunit repeat-containing protein 1 [Crassostrea gigas])

HSP 1 Score: 111.309 bits (277), Expect = 8.941e-23
Identity = 74/241 (30.71%), Postives = 112/241 (46.47%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPT-----TRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMR---------------DGEEDVRR---WCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVI 247
            F  DP IDEYDF+ +P  + +       P +L+ HKLGI +W+VK ++Q A +            LIG     PP       LDPT     TRA+LL+NAD  +AWN RK L+  G L   E++ F  +VL+KH K    ++HR+W +   ++   +       G  T   + + ++   M                D   D+     +  +  KEM + +  A   P NY AW+ R+WV+
Sbjct:   18 FRRDPEIDEYDFLPVPEPKHNRS-----PLVLQEHKLGIESWSVKILFQYAYN-----------QLIGWRNNTPP----TKFLDPTELCSLTRAILLVNADCSTAWNTRKELVDNGDLSVTEDLKFGGLVLKKHPKSPETFSHRKWLLHRFIDNCLA----SSIGSNTSSGSNACDRFVNMEAIDLNMDASFNGPNFDNAPDLINQPDYNELMRKEMNVCKNAADNHPCNYNAWSHRIWVL 234          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|260783284|ref|XP_002586706.1| (hypothetical protein BRAFLDRAFT_217651 [Branchiostoma floridae] >gi|229271829|gb|EEN42717.1| hypothetical protein BRAFLDRAFT_217651 [Branchiostoma floridae])

HSP 1 Score: 107.071 bits (266), Expect = 7.583e-22
Identity = 70/218 (32.11%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVI 247
            F   P IDE  FI  P  + +       P ++EN+KLGI TW ++ I+      Y   +  R  +   + ++         LL+  TRA+LL+ AD  +AWNIRK L+ A  L++ +++ F  +VL KH K    +AHRRW +  V++K  S   +P          R  E  C             ++ E E+A+ ++ A  +P NYYAWT R WV+
Sbjct:   17 FQRHPNIDEVGFICCPTCQHNRS-----PVVVENNKLGIETWCLELIF-----PYAHDKVLRARSRDDSGRKIKVSRSARSLLE-ATRAVLLVQADCLTAWNIRKELVEAEDLKSIQDLKFAALVLTKHPKSSETFAHRRWLLKQVVQKTSSTSLQPHP------RGRKAELPCDE-----------KLLEAELAVCQRSAERYPSNYYAWTHRAWVV 206          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|1126183226|ref|XP_019624168.1| (PREDICTED: LOW QUALITY PROTEIN: protein prenyltransferase alpha subunit repeat-containing protein 1-like [Branchiostoma belcheri])

HSP 1 Score: 107.457 bits (267), Expect = 3.226e-21
Identity = 73/237 (30.80%), Postives = 112/237 (47.26%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREP----ETGRRTVMSARSQEQGCT----------MRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLR 252
            F   P IDE  FI  P  + +       P ++EN+KLGI TW ++ I+      Y   +  R      N ++         LL+  TRA+LL+ AD  +AWNIRK L+ A  L+  +++ F  +VL KH K    +AHRRW +  +++K  S   +P    +      + A  Q  G             + G  ++    ++ E E+A+ +  A  +P NYYAWT R WV+ Q  R
Sbjct:   17 FQRHPNIDEVGFIPCPTCQHNRS-----PVVVENNKLGIETWCLELIF-----PYAHDKVLRARGRDDNGRKIKVSRSARSLLE-ATRAVLLVQADCLTAWNIRKELVEAEDLKCIQDLKFAALVLTKHPKSSETFAHRRWLLKQIVQKTTSTSLQPSPVSQASHTNGLVAGDQASGGAAAVPPLNARGTKSGGAELPCDEKLLETELAVCQSSAERYPSNYYAWTHRAWVVEQVAR 242          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|908470046|ref|XP_013088227.1| (PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1-like [Biomphalaria glabrata])

HSP 1 Score: 106.686 bits (265), Expect = 3.604e-21
Identity = 78/241 (32.37%), Postives = 114/241 (47.30%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPT-----TRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRW--------CVAHVLEKARSHLREPETGRRTVMS---------ARSQEQGCTMRDGEEDVRRWCRMKEK-EMAMTRQIAALFPRNYYAWTQRLWVI 247
            F  DP IDEYD   LP  E +   +   PFLL+ HKLG+  WAVK + +     Y + R      LIG   + P        +DPT     TRAL+L N D Y+AWN+RK L+ +G L   +++ F  +VL KH K    + HRRW        C++  L+   S    PE    + +S         A  +  G    D   +  R  ++  + EM +  + A  +  NY+AW+ R+W+I
Sbjct:   17 FKRDPNIDEYDI--LPVLEPTHNRS---PFLLQEHKLGVEAWAVKVLMK-----YVATR------LIGWRSQNPL----VKFIDPTEVLNLTRALILFNPDNYTAWNVRKELVESGFLNIADDLQFGALVLSKHPKSAETFIHRRWLFQQLLDHCLSSSLDSNGSVAAVPENNADSSISMDLIDVDIVASPENDGPLSMDQSLECSRLFKLHTQLEMRVCARAAERYQCNYHAWSHRIWII 237          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|669163228|ref|XP_008617176.1| (hypothetical protein SDRG_12872 [Saprolegnia diclina VS20] >gi|530731167|gb|EQC29409.1| hypothetical protein SDRG_12872 [Saprolegnia diclina VS20])

HSP 1 Score: 103.99 bits (258), Expect = 1.519e-20
Identity = 70/217 (32.26%), Postives = 105/217 (48.39%), Query Frame = 0
Query:   27 AACFLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQR 243
            +A F +DP IDE   I L   ED  +      F+LE+HKLGIA   + A+++EA   +++ R                R+ D D +   TR +LL+ AD Y+AWN RK+LL+ G L   +EI+F+++VL  HSK    WAHRRW    VL+             R V++  +                       E+A+  ++   +PRNY+AW+ R
Sbjct:   11 SALFAADPDIDEIGIIYL---EDPAE-----AFVLEDHKLGIALDMLPALHREAKDVFFAAR----------------RSNDVDSIREATRCMLLVCADFYTAWNARKQLLVQGLLSLRDEITFMNVVLSHHSKSIDTWAHRRW----VLD-------------RLVVTTLTAS-----------------FLSDELALCLRLTEQYPRNYHAWSYR 169          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|813111120|ref|XP_012195105.1| (hypothetical protein SPRG_01505 [Saprolegnia parasitica CBS 223.65] >gi|641540587|gb|KDO34369.1| hypothetical protein SPRG_01505 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.449 bits (254), Expect = 4.719e-20
Identity = 69/217 (31.80%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   27 AACFLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQR 243
            +A F +DP IDE   I L   ED  +      F+L++HKLGIA   + A+++EA   +++ R                R+ D D +   TR +LL+ AD Y+AWN RK+LL+ G L   +EI+F+++VL  HSK    WAHRRW    VL++               + A +      + D              E+A+  ++   +PRNY+AW+ R
Sbjct:   11 SALFAADPDIDEIGLIYL---EDPAE-----AFVLKDHKLGIALDMLPALHREAKDVFFAAR----------------RSNDVDRIREATRCMLLVCADFYTAWNARKQLLVQGLLSLRDEITFINVVLSHHSKSIDTWAHRRW----VLDR---------------LVATTPLTASFLSD--------------ELALCLRLTEQYPRNYHAWSYR 170          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|291222421|ref|XP_002731215.1| (PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1-like [Saccoglossus kowalevskii])

HSP 1 Score: 100.908 bits (250), Expect = 3.614e-19
Identity = 73/231 (31.60%), Postives = 111/231 (48.05%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQG----CTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLRLQDG 256
            F  DP IDE  FI  P    +       P +L+ HKLG+ +W +  +YQ A   Y  L  AR         E   R   +DL+   TRA+L+IN + Y+ WN+RK L+ + KL    ++ F  ++  +  K    +AHR+W    +L + R  L+E +       SAR+ ++          G+EDV     + E E  +    A  +  NY AW+ R+WV LQ+L + DG
Sbjct:   18 FTRDPSIDEVGFIPCPEALQNRS-----PIILQEHKLGLESWCISLLYQYA---YNELLQAR---------EKTVRLVPSDLIG-CTRAVLIINPECYTVWNMRKELVCSHKLDIAADLKFNGLIFTRQPKSPETFAHRKW----LLVQLRQRLQETKDMIDAKDSARNHDENGRHVVGNHRGKEDVVISDSIVENEFKVCTLAAEHYSNNYSAWSHRIWV-LQNLAVCDG 225          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|676421734|ref|XP_009043847.1| (hypothetical protein LOTGIDRAFT_102637 [Lottia gigantea] >gi|556116650|gb|ESP05302.1| hypothetical protein LOTGIDRAFT_102637 [Lottia gigantea])

HSP 1 Score: 96.6709 bits (239), Expect = 1.586e-18
Identity = 62/225 (27.56%), Postives = 102/225 (45.33%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPT-----TRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHL--REPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVI 247
            F  DP IDEYD   LP  E     +   P ++ +HKLG+  W V  +YQ A    +S R                +NG    +DP       RA+LL+N + Y+AWNIRK  + +  L   +++    ++L KH K    + HRRW +   + +    L   +  +   T++  +             +++   R+  +E A+    A  +P NY+AW+ R+W+I
Sbjct:   17 FKRDPNIDEYDV--LPVIEPKHNKS---PLVVVDHKLGVELWCVSILYQHAYDRLFSWRD---------------KNGGGKFIDPVEVGNLCRAVLLVNPECYTAWNIRKECVESCTLNIEDDLKLGRLILTKHPKSPETFIHRRWLLQRYINQCLIFLPTNQNSSSNNTLIPVQLN----------TNIQ---RLVTQEFAVCLHAAEHYPCNYHAWSHRIWLI 208          
BLAST of EWM25729.1 vs. NCBI_GenBank
Match: gi|675374850|gb|KFM67752.1| (Protein prenyltransferase alpha subunit repeat-containing protein 1-B, partial [Stegodyphus mimosarum])

HSP 1 Score: 93.5893 bits (231), Expect = 2.830e-18
Identity = 60/224 (26.79%), Postives = 104/224 (46.43%), Query Frame = 0
Query:   30 FLSDPYIDEYDFISLPATEDSGKDTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVILQDLRL 253
            F  DP IDE+D   LP  E S ++T  CP +   HK+ +  W +K +Y  A + +++ +               P   ++D L   T A+LLIN ++ + WN RK L+    L   +++ F +IVL +  K    +AHR+W +  ++                    +++   CT++          ++ E E  +  ++A L+P NYYAW  R W+I + L +
Sbjct:   18 FKKDPLIDEFDI--LPVHE-SVRNT--CPVIHIEHKVALEDWCIKHVYVYAYNKFFAWK-------------KKPCKFESDKLLIWTCAILLINPEIETVWNARKELVCQNILTPEDDLRFSEIVLSRKPKSSQVFAHRKWILLELI--------------------KNKPSTCTLQ----------QIIEHEFLLCTRVANLYPNNYYAWCHRSWIIQEVLHV 193          
The following BLAST results are available for this feature:
BLAST of EWM25729.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107591|gb|EWM25729.1|0.000e+0100.00protein prenyltransferase alpha subunit repeat con... [more]
gi|762141206|ref|XP_011453785.1|8.941e-2330.71PREDICTED: protein prenyltransferase alpha subunit... [more]
gi|260783284|ref|XP_002586706.1|7.583e-2232.11hypothetical protein BRAFLDRAFT_217651 [Branchiost... [more]
gi|1126183226|ref|XP_019624168.1|3.226e-2130.80PREDICTED: LOW QUALITY PROTEIN: protein prenyltran... [more]
gi|908470046|ref|XP_013088227.1|3.604e-2132.37PREDICTED: protein prenyltransferase alpha subunit... [more]
gi|669163228|ref|XP_008617176.1|1.519e-2032.26hypothetical protein SDRG_12872 [Saprolegnia dicli... [more]
gi|813111120|ref|XP_012195105.1|4.719e-2031.80hypothetical protein SPRG_01505 [Saprolegnia paras... [more]
gi|291222421|ref|XP_002731215.1|3.614e-1931.60PREDICTED: protein prenyltransferase alpha subunit... [more]
gi|676421734|ref|XP_009043847.1|1.586e-1827.56hypothetical protein LOTGIDRAFT_102637 [Lottia gig... [more]
gi|675374850|gb|KFM67752.1|2.830e-1826.79Protein prenyltransferase alpha subunit repeat-con... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4954rna4954Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications