EWM25787.1, cds4888 (CDS) Nannochloropsis gaditana

Overview
NameEWM25787.1
Unique Namecds4888
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:625730..627172 -
Alignment locationCM002464.1:625400..625660 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25787.1
ProductCell cycle regulated microtubule associated protein
Orig transcript idgnl|cribi|Naga_100176g12.1056.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:625730..627172 -
CM002464.1supercontigCM002464.1:625400..625660 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0065009regulation of molecular function
GO:0016043cellular component organization
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR027330TPX2_central_dom
Homology
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BLAST of EWM25787.1 vs. NCBI_GenBank
Match: gi|585107653|gb|EWM25787.1| (Cell cycle regulated microtubule associated protein [Nannochloropsis gaditana])

HSP 1 Score: 1157.51 bits (2993), Expect = 0.000e+0
Identity = 567/567 (100.00%), Postives = 567/567 (100.00%), Query Frame = 0 
Query:    1 MRLAAEAKERLKQQIRTNRLAYERNRMVGGTAGSAPLRSTKALTIPQSPHLRLSARRGEKHTSTSTVSHHSKDPAVEIYAKPRPASRTVSHGAINASQKASRPLTVPMAPSFHTEMRALARRNSPTYQGSTNVPNGSYQAEAFPQSHLPPLQKQRVNASGGGALRQHAPRHMSPRTLTVPQTLKLSTQMRAAVRNNSMGEAVHVDLGKGRQGQERDPEENRHQFKARPLDRRILESTGEMGVPKVSKGGVTISQPFHFKTDSRHRLRGALSEAGRVQTETYEGKHQRNKSVPLQLSAAESKMASKARISAREEQVELEMKASSSPALASRKILSAACAQEVLETSELRLPSVHRQDEAQNAWQLEMECLETAEHMQFGGSLEESGPGSLVERALSKPLKVVHRHPHSENLSTSARVLDRKASEDIIQERSEEAPGDKARPRDARDDFRGARLTSKMQPDSTSKPAPKGNGLGTGSRVRKLTACIEGTGPGRHERPLFHLLVEAEIMPAGVVSGHAICIARLCNAYLEEKVEFASFFGGHTIYGKQKKERERARATEIHFIPSLKEKL 567
            MRLAAEAKERLKQQIRTNRLAYERNRMVGGTAGSAPLRSTKALTIPQSPHLRLSARRGEKHTSTSTVSHHSKDPAVEIYAKPRPASRTVSHGAINASQKASRPLTVPMAPSFHTEMRALARRNSPTYQGSTNVPNGSYQAEAFPQSHLPPLQKQRVNASGGGALRQHAPRHMSPRTLTVPQTLKLSTQMRAAVRNNSMGEAVHVDLGKGRQGQERDPEENRHQFKARPLDRRILESTGEMGVPKVSKGGVTISQPFHFKTDSRHRLRGALSEAGRVQTETYEGKHQRNKSVPLQLSAAESKMASKARISAREEQVELEMKASSSPALASRKILSAACAQEVLETSELRLPSVHRQDEAQNAWQLEMECLETAEHMQFGGSLEESGPGSLVERALSKPLKVVHRHPHSENLSTSARVLDRKASEDIIQERSEEAPGDKARPRDARDDFRGARLTSKMQPDSTSKPAPKGNGLGTGSRVRKLTACIEGTGPGRHERPLFHLLVEAEIMPAGVVSGHAICIARLCNAYLEEKVEFASFFGGHTIYGKQKKERERARATEIHFIPSLKEKL
Sbjct:    1 MRLAAEAKERLKQQIRTNRLAYERNRMVGGTAGSAPLRSTKALTIPQSPHLRLSARRGEKHTSTSTVSHHSKDPAVEIYAKPRPASRTVSHGAINASQKASRPLTVPMAPSFHTEMRALARRNSPTYQGSTNVPNGSYQAEAFPQSHLPPLQKQRVNASGGGALRQHAPRHMSPRTLTVPQTLKLSTQMRAAVRNNSMGEAVHVDLGKGRQGQERDPEENRHQFKARPLDRRILESTGEMGVPKVSKGGVTISQPFHFKTDSRHRLRGALSEAGRVQTETYEGKHQRNKSVPLQLSAAESKMASKARISAREEQVELEMKASSSPALASRKILSAACAQEVLETSELRLPSVHRQDEAQNAWQLEMECLETAEHMQFGGSLEESGPGSLVERALSKPLKVVHRHPHSENLSTSARVLDRKASEDIIQERSEEAPGDKARPRDARDDFRGARLTSKMQPDSTSKPAPKGNGLGTGSRVRKLTACIEGTGPGRHERPLFHLLVEAEIMPAGVVSGHAICIARLCNAYLEEKVEFASFFGGHTIYGKQKKERERARATEIHFIPSLKEKL 567
The following BLAST results are available for this feature:
BLAST of EWM25787.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107653|gb|EWM25787.1|0.000e+0100.00Cell cycle regulated microtubule associated protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4900rna4900Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications