EWM25851.1, cds4881 (CDS) Nannochloropsis gaditana

Overview
NameEWM25851.1
Unique Namecds4881
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:614536..614716 -
Alignment locationCM002464.1:613641..614266 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25851.1
Productglycine cleavage system regulatory protein
Orig transcript idgnl|cribi|Naga_100021g72.8794.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:614536..614716 -
CM002464.1supercontigCM002464.1:613641..614266 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016597amino acid binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002912ACT_dom
Homology
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|585107718|gb|EWM25851.1| (glycine cleavage system regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268
            MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE
Sbjct:    1 MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|971509473|dbj|GAQ88738.1| (hypothetical protein KFL_004550090 [Klebsormidium nitens])

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-24
Identity = 62/170 (36.47%), Postives = 97/170 (57.06%), Query Frame = 0
Query:   93 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRV---AAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDL 259
              ++TA+GPDR GIV  ++K +L+  G+++ESRM R+  DFS++M V   A     A++I   L  + G+ V T   T+E  + +          ++ G ++PGLVY VTE   +  + +E L T T+ APFGGT LF+MDG +     I  A L    ++L + LG+D+
Sbjct:   95 QLVMTASGPDRPGIVSRLSKRLLELGGNVEESRMARLAGDFSILMLVTVDATVPSRAEEIRSSLSDIEGLHVFTR-WTSEDPSYLKKLQKRFRRISLRGADNPGLVYNVTEYLASLHVNIESLETGTEEAPFGGTTLFMMDGIVAIPPDISTARLASDLDALQTTLGVDI 263          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|219118005|ref|XP_002179786.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408839|gb|EEC48772.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 106.301 bits (264), Expect = 3.270e-24
Identity = 61/175 (34.86%), Postives = 91/175 (52.00%), Query Frame = 0
Query:   92 SHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDLK 262
            S  I+ A G DR GIV DI  +V+++ G++ ES+  R+G  FSLMM V+ P    + +  KL  +  M+       A  +    P   +   F + G ++PG+V+K+T      GL +EKL TD +IAP GGTVLF M G   +  P+    D A +K     L   L  D+ ++
Sbjct:   33 SDLIINAVGSDRLGIVSDITGMVIEHGGNVGESQAARLGSHFSLMMLVSVPSEHLEGLQTKLRNLPDMNAAIFEAQA-GSKPTTPATGYSGYFRLAGADNPGIVHKITSALVKHGLSIEKLGTDKEIAPHGGTVLFKMTGVASAAAPLANGFDIAKIKSELIELGDSLNCDVSME 206          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1210520713|dbj|GAX20469.1| (hypothetical protein FisN_22Hh037 [Fistulifera solaris])

HSP 1 Score: 104.76 bits (260), Expect = 9.594e-24
Identity = 52/150 (34.67%), Postives = 88/150 (58.67%), Query Frame = 0
Query:   82 SVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDG 231
            ++ RA   + +  I+ A G DR GIV DI  +V+D  G++ +S+  ++G  FSLMM V+ P  +   +  +L  +  M+      +   ++Q  P+  + A F +EG +HPG+V+K+T      GL ++K+ TD +IAP+GG++LF M G
Sbjct:   16 ALKRAWLSSSTDLIINAVGKDRLGIVSDITGMVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTNLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRG 164          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1210529834|dbj|GAX11367.1| (hypothetical protein FisN_22Lh037 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 4.796e-23
Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query:   82 SVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDG 231
            ++ R    + +  I+ A G DR GIV DI  +V+D  G++ +S+  ++G  FSLMM V+ P  +   +  +L  +  M+      +   ++Q  P+  + A F +EG +HPG+V+K+T      GL ++K+ TD +IAP+GG++LF M G
Sbjct:   16 ALKRVWLSSSTDLIINAVGKDRLGIVSDITGIVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTSLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRG 164          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|224015074|ref|XP_002297198.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968173|gb|EED86523.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 98.2117 bits (243), Expect = 5.086e-21
Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 0
Query:   87 STPADS-HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGK-VGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDL 261
            S+P++  H ++   G DR GIV D+ +++ ++ G++ ESR   +G  FSLMM V   + D   +   L + V GMS         R  +V PK  +  +F + G ++PGLV+K+T       L +  + T  + APFGGT LF M+G  ++ +P+    D+  +KE    +   +  D++ 
Sbjct:   41 SSPSNKKHLVINTVGTDRPGIVADVTRIITNHGGNVGESRAQLLGGHFSLMMLVEIAEGDMKSLHGDLERGVEGMSTTCFDAVDPRLVEVSPKIGFAGHFKLSGADNPGLVHKLTSALARNSLTIGSMQTFQEEAPFGGTELFTMEGKAVAYQPLASNFDWKKIKEELVEMGESMNCDVEF 221          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|397583677|gb|EJK52733.1| (hypothetical protein THAOC_27960 [Thalassiosira oceanica])

HSP 1 Score: 96.2857 bits (238), Expect = 1.002e-20
Identity = 54/177 (30.51%), Postives = 92/177 (51.98%), Query Frame = 0
Query:   96 LTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDLKPLPTSE 268
            ++  G DR GIV DI  +V+   G+I ESR   +G  FS ++ V     +   + +KL  +  + +        +  +V PK  +  NF + G ++PG+V+K+T  F    L +E + T  + APFGGT+LF M+G  ++ +P+    D+  ++     L   L  D+D KP P ++
Sbjct:   18 ISPVGADRPGIVKDITSIVVQLGGNIGESRSQLLGGHFSSLLLVEICSTNIHVLREKLQTIADLDISCFDAVDPQRVEVRPKIGFSGNFKLSGADNPGIVHKLTSCFTKYSLNIESMSTTHEEAPFGGTLLFKMNGNAVAYEPLPSSFDWKKIRADIIELGEGLNCDIDFKPDPEAK 194          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1134890245|gb|OMJ87560.1| (hypothetical protein SteCoe_10740 [Stentor coeruleus])

HSP 1 Score: 95.1301 bits (235), Expect = 3.483e-20
Identity = 58/181 (32.04%), Postives = 99/181 (54.70%), Query Frame = 0
Query:   85 RASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGK----VGGMSVIT--HPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDL 259
            R  T A    ILT TG DR G+V DI  ++ D +G+I +SRM ++  +FSLM+ +  P+ +      K+ K    +G    +T  HP  A    + +    +K    + G + PG+VY +T++  ++G+ ++K+ T +  AP GGT LF +   +  +K IDF   +E+ +SL S L +++
Sbjct:    5 RLFTSAKRKLILTGTGVDRIGLVKDITGIIFDEDGNIADSRMSKLENNFSLMVLIDIPEKNYQSFQDKVKKSREDLGIHLDVTDLHPFPA----KTIEIQDYKVFIELIGDDQPGIVYSLTQILASQGVNIDKIDTFSFSAPMGGTTLFKVKSRVTVNKIIDFDKFQESLKSLESSLVVEI 181          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|499717929|ref|WP_011398663.1| (glycine cleavage system protein R [Hahella chejuensis] >gi|83635631|gb|ABC31598.1| Glycine cleavage system regulatory protein [Hahella chejuensis KCTC 2396])

HSP 1 Score: 93.5893 bits (231), Expect = 9.421e-20
Identity = 55/182 (30.22%), Postives = 98/182 (53.85%), Query Frame = 0
Query:   87 STPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDA----DQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPL 264
            + P +++ +++A G DR GIV ++AK   D   +I +SRM  +G +F+L+M V+    DA    + I   L +   +++I     A R     P  A   N NV  ++HPG+VY++ + F++R + +++L T+T  AP  GT +F ++ T+     +  A L+E        L +D  L+P+
Sbjct:    4 TLPRENYLVISAIGEDRPGIVNELAKACSDYQCNIVDSRMTVLGAEFALVMMVSGSW-DAIAKLENIIPPLARKLDLNLIIKQTQARR-----PARALTYNVNVVALDHPGIVYRIAQFFYSRKINIDELQTNTYSAPHSGTQMFNINMTVNIPADMHLASLREEFMLFCDDLNLDAVLEPM 179          
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1123617416|ref|WP_074308005.1| (transcriptional regulator [Singulisphaera sp. GP187] >gi|1119033964|emb|SIO27505.1| glycine cleavage system transcriptional repressor [Singulisphaera sp. GP187])

HSP 1 Score: 92.4337 bits (228), Expect = 1.818e-19
Identity = 48/170 (28.24%), Postives = 89/170 (52.35%), Query Frame = 0
Query:   93 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAW-KANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDL 261
            +++LT TGPDR GIV ++  L+L   G++  SRM+R+G +F+++M V+ P    D +   L  +           AE  +  VP P W      V+G +H G++++V++     G+ +E + ++T  AP  G+ LF M   ++    +   D +   E +   L +++D+
Sbjct:    4 NYVLTLTGPDRIGIVHEVTGLLLARGGNVTTSRMVRLGGEFAVLMLVSLPSEPFDGLEVDLASLTAQGYKITTTVAEHPHAEVP-PGWLPYRIEVQGADHEGIIHEVSQYLSQNGVNIESIDSETTPAPTTGSPLFAMTAHVVIPPSLSVPDWEAGLEKIGVRLNVEIDV 172          
The following BLAST results are available for this feature:
BLAST of EWM25851.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107718|gb|EWM25851.1|0.000e+0100.00glycine cleavage system regulatory protein [Nannoc... [more]
gi|971509473|dbj|GAQ88738.1|3.196e-2436.47hypothetical protein KFL_004550090 [Klebsormidium ... [more]
gi|219118005|ref|XP_002179786.1|3.270e-2434.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210520713|dbj|GAX20469.1|9.594e-2434.67hypothetical protein FisN_22Hh037 [Fistulifera sol... [more]
gi|1210529834|dbj|GAX11367.1|4.796e-2334.00hypothetical protein FisN_22Lh037 [Fistulifera sol... [more]
gi|224015074|ref|XP_002297198.1|5.086e-2130.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397583677|gb|EJK52733.1|1.002e-2030.51hypothetical protein THAOC_27960 [Thalassiosira oc... [more]
gi|1134890245|gb|OMJ87560.1|3.483e-2032.04hypothetical protein SteCoe_10740 [Stentor coerule... [more]
gi|499717929|ref|WP_011398663.1|9.421e-2030.22glycine cleavage system protein R [Hahella chejuen... [more]
gi|1123617416|ref|WP_074308005.1|1.818e-1928.24transcriptional regulator [Singulisphaera sp. GP18... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4893rna4893Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications