EWM25851.1, cds4881 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|585107718|gb|EWM25851.1| (glycine cleavage system regulatory protein [Nannochloropsis gaditana]) HSP 1 Score: 548.51 bits (1412), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query: 1 MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268
MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE
Sbjct: 1 MKVLASLTFDLTLGGSKRSFIDPNTPSHLEFLFNFHTCFPPALPGQDAAMLSTFSSNLKRAAMHPTMMHMVRVNLARAGMVSVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPLPTSE 268
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|971509473|dbj|GAQ88738.1| (hypothetical protein KFL_004550090 [Klebsormidium nitens]) HSP 1 Score: 108.612 bits (270), Expect = 3.196e-24 Identity = 62/170 (36.47%), Postives = 97/170 (57.06%), Query Frame = 0
Query: 93 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRV---AAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDL 259
++TA+GPDR GIV ++K +L+ G+++ESRM R+ DFS++M V A A++I L + G+ V T T+E + + ++ G ++PGLVY VTE + + +E L T T+ APFGGT LF+MDG + I A L ++L + LG+D+
Sbjct: 95 QLVMTASGPDRPGIVSRLSKRLLELGGNVEESRMARLAGDFSILMLVTVDATVPSRAEEIRSSLSDIEGLHVFTR-WTSEDPSYLKKLQKRFRRISLRGADNPGLVYNVTEYLASLHVNIESLETGTEEAPFGGTTLFMMDGIVAIPPDISTARLASDLDALQTTLGVDI 263
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|219118005|ref|XP_002179786.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408839|gb|EEC48772.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 106.301 bits (264), Expect = 3.270e-24 Identity = 61/175 (34.86%), Postives = 91/175 (52.00%), Query Frame = 0
Query: 92 SHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDLK 262
S I+ A G DR GIV DI +V+++ G++ ES+ R+G FSLMM V+ P + + KL + M+ A + P + F + G ++PG+V+K+T GL +EKL TD +IAP GGTVLF M G + P+ D A +K L L D+ ++
Sbjct: 33 SDLIINAVGSDRLGIVSDITGMVIEHGGNVGESQAARLGSHFSLMMLVSVPSEHLEGLQTKLRNLPDMNAAIFEAQA-GSKPTTPATGYSGYFRLAGADNPGIVHKITSALVKHGLSIEKLGTDKEIAPHGGTVLFKMTGVASAAAPLANGFDIAKIKSELIELGDSLNCDVSME 206
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1210520713|dbj|GAX20469.1| (hypothetical protein FisN_22Hh037 [Fistulifera solaris]) HSP 1 Score: 104.76 bits (260), Expect = 9.594e-24 Identity = 52/150 (34.67%), Postives = 88/150 (58.67%), Query Frame = 0
Query: 82 SVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDG 231
++ RA + + I+ A G DR GIV DI +V+D G++ +S+ ++G FSLMM V+ P + + +L + M+ + ++Q P+ + A F +EG +HPG+V+K+T GL ++K+ TD +IAP+GG++LF M G
Sbjct: 16 ALKRAWLSSSTDLIINAVGKDRLGIVSDITGMVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTNLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRG 164
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1210529834|dbj|GAX11367.1| (hypothetical protein FisN_22Lh037 [Fistulifera solaris]) HSP 1 Score: 102.834 bits (255), Expect = 4.796e-23 Identity = 51/150 (34.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query: 82 SVSRASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDG 231
++ R + + I+ A G DR GIV DI +V+D G++ +S+ ++G FSLMM V+ P + + +L + M+ + ++Q P+ + A F +EG +HPG+V+K+T GL ++K+ TD +IAP+GG++LF M G
Sbjct: 16 ALKRVWLSSSTDLIINAVGKDRLGIVSDITGIVIDAGGNVGDSQAAKLGPHFSLMMMVSVPTEELTSLQSRLQSMPDMNATVFE-SKLGSSQFTPQIGYSAYFTLEGADHPGIVHKITAALAKAGLSIDKMETDQEIAPYGGSMLFKMRG 164
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|224015074|ref|XP_002297198.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968173|gb|EED86523.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 98.2117 bits (243), Expect = 5.086e-21 Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 0
Query: 87 STPADS-HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGK-VGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDL 261
S+P++ H ++ G DR GIV D+ +++ ++ G++ ESR +G FSLMM V + D + L + V GMS R +V PK + +F + G ++PGLV+K+T L + + T + APFGGT LF M+G ++ +P+ D+ +KE + + D++
Sbjct: 41 SSPSNKKHLVINTVGTDRPGIVADVTRIITNHGGNVGESRAQLLGGHFSLMMLVEIAEGDMKSLHGDLERGVEGMSTTCFDAVDPRLVEVSPKIGFAGHFKLSGADNPGLVHKLTSALARNSLTIGSMQTFQEEAPFGGTELFTMEGKAVAYQPLASNFDWKKIKEELVEMGESMNCDVEF 221
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|397583677|gb|EJK52733.1| (hypothetical protein THAOC_27960 [Thalassiosira oceanica]) HSP 1 Score: 96.2857 bits (238), Expect = 1.002e-20 Identity = 54/177 (30.51%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 96 LTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPI----DFADLKEASESLSSFLGIDLDLKPLPTSE 268
++ G DR GIV DI +V+ G+I ESR +G FS ++ V + + +KL + + + + +V PK + NF + G ++PG+V+K+T F L +E + T + APFGGT+LF M+G ++ +P+ D+ ++ L L D+D KP P ++
Sbjct: 18 ISPVGADRPGIVKDITSIVVQLGGNIGESRSQLLGGHFSSLLLVEICSTNIHVLREKLQTIADLDISCFDAVDPQRVEVRPKIGFSGNFKLSGADNPGIVHKLTSCFTKYSLNIESMSTTHEEAPFGGTLLFKMNGNAVAYEPLPSSFDWKKIRADIIELGEGLNCDIDFKPDPEAK 194
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1134890245|gb|OMJ87560.1| (hypothetical protein SteCoe_10740 [Stentor coeruleus]) HSP 1 Score: 95.1301 bits (235), Expect = 3.483e-20 Identity = 58/181 (32.04%), Postives = 99/181 (54.70%), Query Frame = 0
Query: 85 RASTPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGK----VGGMSVIT--HPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDL 259
R T A ILT TG DR G+V DI ++ D +G+I +SRM ++ +FSLM+ + P+ + K+ K +G +T HP A + + +K + G + PG+VY +T++ ++G+ ++K+ T + AP GGT LF + + +K IDF +E+ +SL S L +++
Sbjct: 5 RLFTSAKRKLILTGTGVDRIGLVKDITGIIFDEDGNIADSRMSKLENNFSLMVLIDIPEKNYQSFQDKVKKSREDLGIHLDVTDLHPFPA----KTIEIQDYKVFIELIGDDQPGIVYSLTQILASQGVNIDKIDTFSFSAPMGGTTLFKVKSRVTVNKIIDFDKFQESLKSLESSLVVEI 181
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|499717929|ref|WP_011398663.1| (glycine cleavage system protein R [Hahella chejuensis] >gi|83635631|gb|ABC31598.1| Glycine cleavage system regulatory protein [Hahella chejuensis KCTC 2396]) HSP 1 Score: 93.5893 bits (231), Expect = 9.421e-20 Identity = 55/182 (30.22%), Postives = 98/182 (53.85%), Query Frame = 0
Query: 87 STPADSHFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDA----DQITQKLGKVGGMSVITHPVTAERANQVVPKPAWKANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDLKPL 264
+ P +++ +++A G DR GIV ++AK D +I +SRM +G +F+L+M V+ DA + I L + +++I A R P A N NV ++HPG+VY++ + F++R + +++L T+T AP GT +F ++ T+ + A L+E L +D L+P+
Sbjct: 4 TLPRENYLVISAIGEDRPGIVNELAKACSDYQCNIVDSRMTVLGAEFALVMMVSGSW-DAIAKLENIIPPLARKLDLNLIIKQTQARR-----PARALTYNVNVVALDHPGIVYRIAQFFYSRKINIDELQTNTYSAPHSGTQMFNINMTVNIPADMHLASLREEFMLFCDDLNLDAVLEPM 179
BLAST of EWM25851.1 vs. NCBI_GenBank
Match: gi|1123617416|ref|WP_074308005.1| (transcriptional regulator [Singulisphaera sp. GP187] >gi|1119033964|emb|SIO27505.1| glycine cleavage system transcriptional repressor [Singulisphaera sp. GP187]) HSP 1 Score: 92.4337 bits (228), Expect = 1.818e-19 Identity = 48/170 (28.24%), Postives = 89/170 (52.35%), Query Frame = 0
Query: 93 HFILTATGPDRAGIVFDIAKLVLDNNGDIQESRMMRMGCDFSLMMRVAAPKPDADQITQKLGKVGGMSVITHPVTAERANQVVPKPAW-KANFNVEGVNHPGLVYKVTELFFARGLRVEKLHTDTKIAPFGGTVLFLMDGTIISDKPIDFADLKEASESLSSFLGIDLDL 261
+++LT TGPDR GIV ++ L+L G++ SRM+R+G +F+++M V+ P D + L + AE + VP P W V+G +H G++++V++ G+ +E + ++T AP G+ LF M ++ + D + E + L +++D+
Sbjct: 4 NYVLTLTGPDRIGIVHEVTGLLLARGGNVTTSRMVRLGGEFAVLMLVSLPSEPFDGLEVDLASLTAQGYKITTTVAEHPHAEVP-PGWLPYRIEVQGADHEGIIHEVSQYLSQNGVNIESIDSETTPAPTTGSPLFAMTAHVVIPPSLSVPDWEAGLEKIGVRLNVEIDV 172 The following BLAST results are available for this feature:
BLAST of EWM25851.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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