EWM25810.1, cds4850 (CDS) Nannochloropsis gaditana

Overview
NameEWM25810.1
Unique Namecds4850
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:530280..530990 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25810.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100021g35.8753.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:530280..530990 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|553196407|ref|XP_005856335.1| (hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >gi|422292715|gb|EKU20017.1| hypothetical protein NGA_2014700 [Nannochloropsis gaditana CCMP526] >gi|585107677|gb|EWM25810.1| hypothetical protein Naga_100021g35 [Nannochloropsis gaditana])

HSP 1 Score: 470.315 bits (1209), Expect = 1.446e-167
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MPLRRSRAFVGNTLLVHPRGQAWTSVPVNAAFETPRSLYARPVLSVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHEEGAQSPSKEGRARPATPADVIDAKVTSIRDKNLN 236
            MPLRRSRAFVGNTLLVHPRGQAWTSVPVNAAFETPRSLYARPVLSVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHEEGAQSPSKEGRARPATPADVIDAKVTSIRDKNLN
Sbjct:    1 MPLRRSRAFVGNTLLVHPRGQAWTSVPVNAAFETPRSLYARPVLSVGKMKLAADMQSFRDGFRTLFFPGVGILSLGLPFLLVGVLVGKPSSGEAKDTNLKTKRSSLLIASNPLFQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHEEGAQSPSKEGRARPATPADVIDAKVTSIRDKNLN 236          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|545373493|ref|XP_005651106.1| (hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169] >gi|384253087|gb|EIE26562.1| hypothetical protein COCSUDRAFT_52381 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 80.8777 bits (198), Expect = 3.873e-16
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 0
Query:  126 KLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHEEGAQSPSKEGR 213
            KL+ S+ +D +G  S +VPG G +SD  WAPV A +V  LY N +L  ++ +EE+LP TDI+P+ATI +L+++    + AQ  +++ R
Sbjct:   15 KLIVSLAIDFVGMSSYIVPGAGNISDIGWAPVQAFIVHHLYNNRLLTTLSFIEEVLPFTDIVPSATIGWLMEYTRAGKRAQDEAEQVR 102          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|551544509|ref|XP_005760304.1| (hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >gi|551565740|ref|XP_005769300.1| hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516] >gi|485608710|gb|EOD07875.1| hypothetical protein EMIHUDRAFT_317180 [Emiliania huxleyi CCMP1516] >gi|485620209|gb|EOD16871.1| hypothetical protein EMIHUDRAFT_356053, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 82.0333 bits (201), Expect = 1.218e-15
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 0
Query:  124 VIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFWHEEG------------AQSPSKEGRARPATPADVID 224
            +IKL+ SI++DL+G  S  VP  GE +D  WAPVSA +V  LYGN++L  +   EE+LP  D++PTATI +LL+    E G            A +PS  G++R    ADVID
Sbjct:   80 LIKLLVSILIDLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLEN--TELGRSVNEASAPPPKADAPSSAGKSR-GDDADVID 189          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|298709827|emb|CBJ31625.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.4925 bits (197), Expect = 2.415e-15
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 0
Query:  126 KLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLL 196
            KL  S+++DLIG  S  +PG+GE +D  WAP+S+A++  LYGN++ A +  +EE+LP  D+IPTATIA+ L
Sbjct:   30 KLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFL 100          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|499483862|ref|WP_011170502.1| (hypothetical protein [Methanococcus maripaludis] >gi|44920878|emb|CAF30114.1| hypothetical protein MMP0558 [Methanococcus maripaludis S2])

HSP 1 Score: 77.411 bits (189), Expect = 7.473e-15
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 0
Query:  126 KLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFF 199
            KL+ SI LD++G  + L+PGLGE  DF+WAP+ A ++R LY +++L      EELL  TDIIP+ATI ++L+ F
Sbjct:   12 KLIISIALDIVGMATYLIPGLGESGDFVWAPIYALIIRNLYHSSILGFFGGFEELLMGTDIIPSATILWVLETF 85          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|503765008|ref|WP_013999084.1| (hypothetical protein [Methanococcus maripaludis] >gi|339904175|gb|AEK19617.1| hypothetical protein GYY_03690 [Methanococcus maripaludis X1])

HSP 1 Score: 77.411 bits (189), Expect = 7.632e-15
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 0
Query:  126 KLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFF 199
            KL+ SI LD++G  + L+PGLGE  DF+WAP+ A ++R LY +++L      EELL  TDIIP+ATI ++L+ F
Sbjct:   12 KLIISIALDIVGMATYLIPGLGESGDFVWAPIYALIIRNLYHSSILGFFGGFEELLIGTDIIPSATILWVLETF 85          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|470430917|ref|XP_004338347.1| (hypothetical protein ACA1_203890 [Acanthamoeba castellanii str. Neff] >gi|440795198|gb|ELR16334.1| hypothetical protein ACA1_203890 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 80.4925 bits (197), Expect = 9.225e-15
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0
Query:  108 IASNPL--FQEYRFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLD 197
            + +NP   F   R +   + KL AS+++D IG  +  VP LGE  D +WAP+S  ++ LLYGN  LA    +EEL+P  D IPTAT+A++ D
Sbjct:  116 VGNNPWGPFANIRLTPTTIAKLFASLLIDAIGFATYAVPVLGEAGDAVWAPISGFLIFLLYGNIWLAGAGFVEELMPGLDFIPTATLAWVAD 207          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|676391613|ref|XP_009039084.1| (hypothetical protein AURANDRAFT_29551 [Aureococcus anophagefferens] >gi|323450246|gb|EGB06128.1| hypothetical protein AURANDRAFT_29551 [Aureococcus anophagefferens])

HSP 1 Score: 77.0258 bits (188), Expect = 1.326e-14
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  126 KLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDFFW 200
            KL+  ++LDL+GD S L+P LGE +D  +APV A+V++ L+ +N +AA   +EE+LP TD+IPT T+++ L   W
Sbjct:   15 KLVGCVVLDLLGDTSELIPFLGEFTDIAYAPVEASVLKALFQSNTIAAFGFVEEILPFTDVIPTFTLSWCLATLW 89          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|929768194|ref|XP_014159030.1| (hypothetical protein SARC_02683 [Sphaeroforma arctica JP610] >gi|906956611|gb|KNC85128.1| hypothetical protein SARC_02683 [Sphaeroforma arctica JP610])

HSP 1 Score: 77.411 bits (189), Expect = 1.938e-14
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 0
Query:  125 IKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFL 195
            +KL  S+++DLIG  + LVPG GE+ D  WAPV A +V  +YG   L A++  EE+LP TD IPTATI ++
Sbjct:   41 VKLFWSVLIDLIGALTYLVPGFGELIDVFWAPVQAYLVSTMYGFGPLTALSFFEEILPGTDFIPTATIGWV 111          
BLAST of EWM25810.1 vs. NCBI_GenBank
Match: gi|551672956|ref|XP_005839234.1| (hypothetical protein GUITHDRAFT_150734 [Guillardia theta CCMP2712] >gi|428183396|gb|EKX52254.1| hypothetical protein GUITHDRAFT_150734 [Guillardia theta CCMP2712])

HSP 1 Score: 76.6406 bits (187), Expect = 2.054e-14
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 0
Query:  118 RFSKALVIKLMASIILDLIGDGSLLVPGLGEVSDFLWAPVSAAVVRLLYGNNVLAAVNLLEELLPSTDIIPTATIAFLLDF 198
            R S+    KLM SI++D+IG  S L+P + E  D  WAP+S+ +V  +YGN +L+ +  +EE+LP TDI PTAT  +L  F
Sbjct:    3 RMSEEKWSKLMLSIVIDIIGILSYLIPVIAEFFDVFWAPLSSLLVFQMYGNRMLSGIAFIEEILPFTDIFPTATFGWLCQF 83          
The following BLAST results are available for this feature:
BLAST of EWM25810.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196407|ref|XP_005856335.1|1.446e-167100.00hypothetical protein NGA_2014700 [Nannochloropsis ... [more]
gi|545373493|ref|XP_005651106.1|3.873e-1642.05hypothetical protein COCSUDRAFT_52381 [Coccomyxa s... [more]
gi|551544509|ref|XP_005760304.1|1.218e-1544.25hypothetical protein EMIHUDRAFT_317180 [Emiliania ... [more]
gi|298709827|emb|CBJ31625.1|2.415e-1550.70conserved unknown protein [Ectocarpus siliculosus][more]
gi|499483862|ref|WP_011170502.1|7.473e-1550.00hypothetical protein [Methanococcus maripaludis] >... [more]
gi|503765008|ref|WP_013999084.1|7.632e-1550.00hypothetical protein [Methanococcus maripaludis] >... [more]
gi|470430917|ref|XP_004338347.1|9.225e-1543.48hypothetical protein ACA1_203890 [Acanthamoeba cas... [more]
gi|676391613|ref|XP_009039084.1|1.326e-1446.67hypothetical protein AURANDRAFT_29551 [Aureococcus... [more]
gi|929768194|ref|XP_014159030.1|1.938e-1450.70hypothetical protein SARC_02683 [Sphaeroforma arct... [more]
gi|551672956|ref|XP_005839234.1|2.054e-1445.68hypothetical protein GUITHDRAFT_150734 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4862rna4862Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications