EWM25797.1, cds4828 (CDS) Nannochloropsis gaditana

Overview
NameEWM25797.1
Unique Namecds4828
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:478457..479482 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25797.1
Productdeoxynucleotidyltransferase terminal-interacting protein 2
Orig transcript idgnl|cribi|Naga_100021g10.8740.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:478457..479482 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014810Fcf2
Homology
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|585107664|gb|EWM25797.1| (deoxynucleotidyltransferase terminal-interacting protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MVFKKRKPKLVKQRQDGKPPEEVSGGVHRGKILMAEGESNATTKQMRIVFQLRHDCTFQKIDTTLSTEVIGKHNMSKRIAFFHRHPSSPQAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            MVFKKRKPKLVKQRQDGKPPEEVSGGVHRGKILMAEGESNATTKQMRIVFQLRHDCTFQKIDTTLSTEVIGKHNMSKRIAFFHRHPSSPQAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR
Sbjct:    1 MVFKKRKPKLVKQRQDGKPPEEVSGGVHRGKILMAEGESNATTKQMRIVFQLRHDCTFQKIDTTLSTEVIGKHNMSKRIAFFHRHPSSPQAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|553195280|ref|XP_005856119.1| (rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422292954|gb|EKU20255.1| rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 517.694 bits (1332), Expect = 3.960e-173
Identity = 250/252 (99.21%), Postives = 252/252 (100.00%), Query Frame = 0
Query:   90 QAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            +AINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKER+QDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR
Sbjct:  804 EAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALLPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRKVNSGAVLHRKGAGGGITGMKTTQGVYERDKERKQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 1055          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|1191067959|ref|XP_020912527.1| (rRNA-processing protein fcf2-like isoform X1 [Exaiptasia pallida] >gi|999984454|gb|KXJ23595.1| rRNA-processing protein fcf2 [Exaiptasia pallida])

HSP 1 Score: 110.153 bits (274), Expect = 1.913e-24
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLEG--LAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            E EQD K+L +RN +D KR YK  +   L   FQVGTV+EG  D   +R+ +RDRK T VDE+LAD   RRY+KKK+L IQ +K++G+KG Y+ +  + KP WAR
Sbjct:  177 EIEQDLKILKLRNVLDRKRHYKKNDSKTLPKYFQVGTVVEGAADFYSSRLSKRDRKSTIVDELLADTEFRRYNKKKYLEIQSSKQSGKKGFYKKKMNRRKPNWAR 281          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|156365626|ref|XP_001626745.1| (predicted protein [Nematostella vectensis] >gi|156213633|gb|EDO34645.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 101.293 bits (251), Expect = 9.612e-23
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLEG--LAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            E +Q+ K+L MR+ +DPKR YK  +   L   FQ+GTV+EG  D   +R+P+R RK   V E+LAD   RRY+KKKFL IQ  K++GRKG Y+ +  + KP WAR
Sbjct:   19 ELKQELKVLKMRHILDPKRHYKKNDSKELPKYFQMGTVVEGAADFYSSRIPKRSRKNNIVQELLADAQFRRYNKKKFLEIQAAKESGRKGFYKKKTNRRKPAWAR 123          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|891579138|ref|XP_013021626.1| (rRNA processing protein Fcf2 [Schizosaccharomyces cryophilus OY26] >gi|528318808|gb|EPY53382.1| rRNA processing protein Fcf2 [Schizosaccharomyces cryophilus OY26])

HSP 1 Score: 95.5153 bits (236), Expect = 2.070e-19
Identity = 67/206 (32.52%), Postives = 105/206 (50.97%), Query Frame = 0
Query:  139 LPQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRK-VNSGAVLHRKGAGGGITGMKTTQGVYERDKEREQDAKMLLMRNYMDPKRFYK--GLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            LP+Q  + +    LG     +    PSYFQ + +   +K  +V N       + SS++       H+P   +       +  AGG    M  T    E  +  ++D ++L MRN +DPKR Y+    + +   FQ GTVIEG  D   +R+P R+RK T  DE++ D   R Y KKK+L IQ++K +GRKG Y+  +++ KP + +
Sbjct:   35 LPKQNWVPKIPHLLG-----SACNLPSYFQQKNVPCVKKDELVSNVPSYV-DESSSIEEPTTLNPHVPAPGITKKKKAVKDTAGGDWFDMPAT----ELTESVKRDIQLLKMRNVLDPKRHYRRENAKQMPKYFQTGTVIEGPQDYFSSRIPTRERKSTITDELVNDTERRGYFKKKYLEIQKSKMSGRKGQYKKLKERRKPSYLK 230          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|765555438|gb|KJE96029.1| (hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 90.8929 bits (224), Expect = 1.412e-18
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLE--GLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            E E+D ++L MRNY+DPK+ +KG +   L   FQ+  V+EG  +   +R+ R++RK T VDE++AD  +R+Y K+KF+ I++    GR+G  +  QQK KP W R
Sbjct:   49 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKPAWMR 153          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|765555437|gb|KJE96028.1| (hypothetical protein CAOG_006402 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 92.4337 bits (228), Expect = 1.462e-18
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLE--GLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            E E+D ++L MRNY+DPK+ +KG +   L   FQ+  V+EG  +   +R+ R++RK T VDE++AD  +R+Y K+KF+ I++    GR+G  +  QQK KP W R
Sbjct:  102 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKPAWMR 206          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|162312474|ref|NP_594087.3| (rRNA processing protein Fcf2 (predicted) [Schizosaccharomyces pombe 972h-] >gi|74582127|sp|O42877.1|FCF2_SCHPO RecName: Full=rRNA-processing protein fcf2 >gi|2706466|emb|CAA15924.1| rRNA processing protein Fcf2 (predicted) [Schizosaccharomyces pombe])

HSP 1 Score: 92.0485 bits (227), Expect = 3.472e-18
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 0
Query:  243 DAKMLLMRNYMDPKRFYK--GLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            D ++L MRN +DPKR Y+    + +   FQVG+++EG  D   +R+P R+RK T VDE+L D   R Y KKK+L +Q++K +GRKG Y+  QQ+ KP + +
Sbjct:  130 DIQLLKMRNALDPKRHYRRENTKSMPKYFQVGSIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQYKKLQQRRKPSYLK 230          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|754350629|ref|XP_004345151.2| (hypothetical protein CAOG_06402 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 92.4337 bits (228), Expect = 3.550e-18
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLE--GLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPKWAR 341
            E E+D ++L MRNY+DPK+ +KG +   L   FQ+  V+EG  +   +R+ R++RK T VDE++AD  +R+Y K+KF+ I++    GR+G  +  QQK KP W R
Sbjct:  142 EVERDLRLLRMRNYLDPKKHFKGSDSKALPKHFQIARVVEGPTEFYSSRLTRKERKNTLVDELMADDRLRKYHKRKFVEIEQRNAQGRRGHVKRLQQKRKPAWMR 246          
BLAST of EWM25797.1 vs. NCBI_GenBank
Match: gi|1176108396|ref|XP_020625135.1| (deoxynucleotidyltransferase terminal-interacting protein 2-like [Orbicella faveolata])

HSP 1 Score: 91.6633 bits (226), Expect = 1.633e-17
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:  239 EREQDAKMLLMRNYMDPKRFYKGLE--GLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHK 336
            E EQD K++ MRN +D KR YK  +   L   FQ+GTV+EG  D   +R+P+R RK   +DE+L+D   RRY+KKK+L IQ  K++G+KG ++ +  K K
Sbjct:  189 EIEQDMKVIKMRNILDRKRHYKKNDSSALPKYFQIGTVVEGSADFYTSRIPKRQRKSNLIDELLSDAEFRRYNKKKYLEIQAAKQSGKKGFHKKKTNKRK 288          
The following BLAST results are available for this feature:
BLAST of EWM25797.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107664|gb|EWM25797.1|0.000e+0100.00deoxynucleotidyltransferase terminal-interacting p... [more]
gi|553195280|ref|XP_005856119.1|3.960e-17399.21rrna (guanine-n -)-methyltransferase [Nannochlorop... [more]
gi|1191067959|ref|XP_020912527.1|1.913e-2451.43rRNA-processing protein fcf2-like isoform X1 [Exai... [more]
gi|156365626|ref|XP_001626745.1|9.612e-2349.52predicted protein [Nematostella vectensis] >gi|156... [more]
gi|891579138|ref|XP_013021626.1|2.070e-1932.52rRNA processing protein Fcf2 [Schizosaccharomyces ... [more]
gi|765555438|gb|KJE96029.1|1.412e-1842.86hypothetical protein, variant [Capsaspora owczarza... [more]
gi|765555437|gb|KJE96028.1|1.462e-1842.86hypothetical protein CAOG_006402 [Capsaspora owcza... [more]
gi|162312474|ref|NP_594087.3|3.472e-1844.55rRNA processing protein Fcf2 (predicted) [Schizosa... [more]
gi|754350629|ref|XP_004345151.2|3.550e-1842.86hypothetical protein CAOG_06402 [Capsaspora owczar... [more]
gi|1176108396|ref|XP_020625135.1|1.633e-1746.00deoxynucleotidyltransferase terminal-interacting p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4840rna4840Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications