EWM25880.1, cds4800 (CDS) Nannochloropsis gaditana

Overview
NameEWM25880.1
Unique Namecds4800
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:429105..430409 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25880.1
ProductAnkyrin repeat-containing protein
Orig transcript idgnl|cribi|Naga_100054g23.5572.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:429105..430409 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|553195325|ref|XP_005856127.1| (hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526] >gi|422292962|gb|EKU20263.1| hypothetical protein NGA_0334800 [Nannochloropsis gaditana CCMP526] >gi|585107748|gb|EWM25880.1| Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 899.812 bits (2324), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query:    1 MTACETASSWPSEAQDTNMAQSQSSNTSGALSPEAAMSPVHGVAGNRISHSASTDSFFGADKASTLSSEPEHCRELLNNASNDDAVTVSPSHTASADRGSGTGDVEEKGRLLAMEEWEQASKNTTTWGVDMVLQRHQQQIFDSDSMDTLGVIPLSCSPPSGAGCKRPRKKMTRPASEPALLNNEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHARSGRSDSESTISGGVEREPRGQKENVETLHSSSAARPVTATGGSTDREGEEVQQTRTSERQRQRKRSKNVK 434
            MTACETASSWPSEAQDTNMAQSQSSNTSGALSPEAAMSPVHGVAGNRISHSASTDSFFGADKASTLSSEPEHCRELLNNASNDDAVTVSPSHTASADRGSGTGDVEEKGRLLAMEEWEQASKNTTTWGVDMVLQRHQQQIFDSDSMDTLGVIPLSCSPPSGAGCKRPRKKMTRPASEPALLNNEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHARSGRSDSESTISGGVEREPRGQKENVETLHSSSAARPVTATGGSTDREGEEVQQTRTSERQRQRKRSKNVK
Sbjct:    1 MTACETASSWPSEAQDTNMAQSQSSNTSGALSPEAAMSPVHGVAGNRISHSASTDSFFGADKASTLSSEPEHCRELLNNASNDDAVTVSPSHTASADRGSGTGDVEEKGRLLAMEEWEQASKNTTTWGVDMVLQRHQQQIFDSDSMDTLGVIPLSCSPPSGAGCKRPRKKMTRPASEPALLNNEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHARSGRSDSESTISGGVEREPRGQKENVETLHSSSAARPVTATGGSTDREGEEVQQTRTSERQRQRKRSKNVK 434          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|298711452|emb|CBJ32591.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 191.815 bits (486), Expect = 1.016e-51
Identity = 93/201 (46.27%), Postives = 120/201 (59.70%), Query Frame = 0
Query:  174 PASEPALLNNE---------------ASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMC--DDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLP 357
            PA  PAL N+E                 P+DFL  +L+ERGY T  +  K   + RPP   QV  YD  ++ AV   D  +L  M AAGR+MDACNRFG+SI+H++CRRG+A  LRFLL   G   +   DD GRT +HDACW   P FD  SA++D D  L+R +D RG++PL Y+  + WP W  FF+S+KE YW  LP
Sbjct:  322 PAEAPALTNDEWVARISPLVPSIPEGTHPEDFLHDLLRERGYTTEMVAMKETVYHRPPEPDQVAAYDKAILRAVLDEDEAALERMRAAGRRMDACNRFGDSILHMACRRGRAAALRFLLRAAGSAGVVSSDDFGRTVMHDACWTSSPRFDVASAVLDADTRLLRTLDSRGSSPLQYVPEDQWPLWCAFFESRKEVYWPKLP 522          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|219127108|ref|XP_002183785.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405022|gb|EEC44967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 176.407 bits (446), Expect = 1.163e-46
Identity = 75/171 (43.86%), Postives = 107/171 (62.57%), Query Frame = 0
Query:  186 SPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPL 356
            SPQ +L  ++  RGY T        A++  PTA Q   YD+ L+  V+   + +LR++  +G   + CN FGES++H+ CRRG  + L+ LLE G  + + DD GRTPLHDACWA  P F  V  I+++DP L+ + DCRGA PLSY+R+EHW EW  + +++K  YW  L
Sbjct:  160 SPQSYLDDMIAARGYSTEKFKTLQTAYYNKPTALQQASYDVYLIDLVKKNGVETLRNIFKSGVSPNPCNTFGESLLHMICRRGDVDLLKVLLECGTNLQVADDYGRTPLHDACWAAKPAFAVVDLILERDPRLLYMSDCRGALPLSYVRKEHWCEWVPYLEARKHTYWPVL 330          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|397585926|gb|EJK53441.1| (hypothetical protein THAOC_27127 [Thalassiosira oceanica])

HSP 1 Score: 174.481 bits (441), Expect = 3.714e-46
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 0
Query:  182 NNEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYW 353
            N  ASPQDFL  IL+ RGY  +   +    +   P+  Q   Y + L  A+R+ +  ++R +   G   +ACN+FGESIVH +CRRG    LR L+E G  V + DD GRTPLHDACW   P FD +  ++DQD  L+ ++DCRG+TPL Y+R+ HW  W  F  +  ++YW
Sbjct:  121 NIVASPQDFLTSILKTRGYSGTSYGSLQTGYHNTPSDHQTKSYGVELTKAIRSSETATVRLLLEKGLHPNACNKFGESIVHAACRRGDHSMLRTLIEAGSSVQVTDDFGRTPLHDACWTSTPNFDTIRLLLDQDKWLLSLMDCRGSTPLKYVRKAHWALWLGFLGAIADQYW 292          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|219127106|ref|XP_002183784.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405021|gb|EEC44966.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 170.244 bits (430), Expect = 5.746e-44
Identity = 76/174 (43.68%), Postives = 104/174 (59.77%), Query Frame = 0
Query:  185 ASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPG 358
             SPQ FL  ++  RGY T+       A++  PT  Q   YD+ L+  V+ G + +LR +  +G   + CN+FGES++H  CR G  + LR +LE G  + + DD GRTPLHDACWA  P    V  I+  DP+L+ + D RGA PLSYIRREHW  W  +F ++K+ YW  L G
Sbjct:  179 VSPQAFLDTMISARGYSTARFETLHTAYYNMPTPLQQASYDVYLIEVVKKGGMETLRSLMKSGISPNPCNKFGESLLHTVCRLGNVDALRVMLECGTSLQVSDDYGRTPLHDACWAVKPALTVVDVILSHDPNLLYLEDSRGALPLSYIRREHWCAWIPYFRARKDMYWPDLSG 352          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|1210528300|dbj|GAX12989.1| (hypothetical protein FisN_2Hh479 [Fistulifera solaris])

HSP 1 Score: 160.614 bits (405), Expect = 1.506e-41
Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 0
Query:  187 PQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHAR 364
            PQ +L  +L+ RGY    + A   ++ + P+  Q   YD+ L+  VR  D+ + + +  +G   +ACN + ESIVH  CRR + E L  LLE+G  + +CDD GRTPLHDACWA  P  D    ++  D  ++ ++D RG  PL+Y+R+EHW +W  F D  K+ +W    G    A+
Sbjct:   89 PQQYLDALLRSRGYSAEKIEALKTSYSKTPSPLQKASYDVYLIGLVRKNDVDNFKQIVESGISPNACNDYKESIVHTVCRRSRKEMLESLLEHGATLQVCDDYGRTPLHDACWAPEPALDVAQVVIKADARMLHMIDARGDAPLNYVRKEHWGDWINFLDEHKDDFWPVQEGATEAAK 266          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|1210530365|dbj|GAX10949.1| (hypothetical protein FisN_2Lh479 [Fistulifera solaris])

HSP 1 Score: 159.844 bits (403), Expect = 2.563e-41
Identity = 67/178 (37.64%), Postives = 101/178 (56.74%), Query Frame = 0
Query:  187 PQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPGCASHAR 364
            PQ +L  +L+ RGY    + A   ++ + P+  Q   YD+ L+  VR  D+ + + +  +G   +ACN + ESIVH  CRR + E L  LLE+G  + +CDD GRTPLHD CWA  P  D    ++  D  ++ ++D RG  PL+Y+R+EHW +W  F D  K+ +W    G    A+
Sbjct:   89 PQQYLDALLKSRGYSAEKIEALKTSYSKTPSPLQKASYDVYLIGLVRKNDVDNFKQIVESGISPNACNDYKESIVHTVCRRSRKEMLESLLEHGATLQVCDDYGRTPLHDTCWAPEPALDVAQVVIKADARMLHMIDARGDAPLNYVRKEHWGDWINFLDEHKDDFWPVQEGATEVAK 266          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|1210521742|dbj|GAX19732.1| (hypothetical protein FisN_19Hh320 [Fistulifera solaris])

HSP 1 Score: 155.992 bits (393), Expect = 7.362e-40
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 0
Query:  183 NEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYW 353
            N   PQ +L  +L+ RGY T    +   ++   PTA Q+  YD+ L+  VR  ++    ++   G   + CN++ E+I H  CR G    L  L+E G    + DD GRTPLHDACWA  P FD V  I+  D  ++ ++D RG  PL+Y+R+EH+ +W +FF+SKKE++W
Sbjct:   87 NLMDPQVYLDAMLRSRGYSTKRYESLKTSYHNKPTAHQLASYDVFLIGLVRKHEVEHFGEIMQTGISSNPCNQYSETIAHTVCRHGSKAMLDVLVERGCDFQVADDYGRTPLHDACWAATPSFDVVEIILKSDVRMLHMIDARGHCPLNYVRKEHYDQWIKFFESKKEEFW 257          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|1210518968|dbj|GAX22250.1| (hypothetical protein FisN_19Lh320 [Fistulifera solaris])

HSP 1 Score: 151.754 bits (382), Expect = 4.076e-39
Identity = 64/167 (38.32%), Postives = 100/167 (59.88%), Query Frame = 0
Query:  187 PQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYW 353
            PQ +L  +L+ RGY T    +   ++   PTA Q+  YD+ L+  VR  ++   +++   G   + CN++ E+I H  CR G    L  L+E G  + + DD GRTPLHDACWA  P  D V  I+  D  ++ ++D RG  PL+Y+R+EH+ +W +FF+SKK+++W
Sbjct:    3 PQVYLDAMLRSRGYSTKRYESLKTSYHNKPTAHQLASYDVFLIGLVRKHEVEQFQEIMQTGISSNPCNQYSETIAHTVCRHGSKAMLDVLVERGCDLQVADDYGRTPLHDACWAATPSLDVVEIILKTDVRMLHMIDARGHCPLNYVRKEHYDQWIKFFESKKDEFW 169          
BLAST of EWM25880.1 vs. NCBI_GenBank
Match: gi|1210522817|dbj|GAX18287.1| (hypothetical protein FisN_23Hh180 [Fistulifera solaris])

HSP 1 Score: 152.91 bits (385), Expect = 6.459e-38
Identity = 73/173 (42.20%), Postives = 97/173 (56.07%), Query Frame = 0
Query:  186 SPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLPG 358
            SP +FL   L+ERGY T        A++  PT  Q+  YD+ L+  VR      L +M   G   + CNR+GES+VH   R G    L+ LL+ G  V + DD GRTPLHDA W   P FD V  ++ QDP L+ ++D RG  PL Y+R+E W  W  FF  + + YWA +PG
Sbjct:  167 SPHEFLVQKLEERGYCTHTFNTLDTAYYIKPTPLQLASYDVYLIGQVRAHQPEGLLEMIQCGLSPNPCNRYGESLVHTVSRFGNHVLLKVLLDQGCTVQVSDDYGRTPLHDAFWTARPSFDTVGLLLQQDPHLLFLMDTRGNVPLDYVRKEDWETWIHFFRDRLDVYWA-IPG 338          
The following BLAST results are available for this feature:
BLAST of EWM25880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553195325|ref|XP_005856127.1|0.000e+0100.00hypothetical protein NGA_0334800 [Nannochloropsis ... [more]
gi|298711452|emb|CBJ32591.1|1.016e-5146.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|219127108|ref|XP_002183785.1|1.163e-4643.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397585926|gb|EJK53441.1|3.714e-4643.60hypothetical protein THAOC_27127 [Thalassiosira oc... [more]
gi|219127106|ref|XP_002183784.1|5.746e-4443.68predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210528300|dbj|GAX12989.1|1.506e-4138.20hypothetical protein FisN_2Hh479 [Fistulifera sola... [more]
gi|1210530365|dbj|GAX10949.1|2.563e-4137.64hypothetical protein FisN_2Lh479 [Fistulifera sola... [more]
gi|1210521742|dbj|GAX19732.1|7.362e-4039.18hypothetical protein FisN_19Hh320 [Fistulifera sol... [more]
gi|1210518968|dbj|GAX22250.1|4.076e-3938.32hypothetical protein FisN_19Lh320 [Fistulifera sol... [more]
gi|1210522817|dbj|GAX18287.1|6.459e-3842.20hypothetical protein FisN_23Hh180 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4812rna4812Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications