EWM25866.1, cds4799 (CDS) Nannochloropsis gaditana

Overview
NameEWM25866.1
Unique Namecds4799
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:426915..427757 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25866.1
Productferredoxin
Orig transcript idgnl|cribi|Naga_100054g21.5558.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:426915..427757 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005506iron ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0178964Fe4S_Fe-S-bd
IPR0010803Fe4S_ferredoxin
Homology
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|585107734|gb|EWM25866.1| (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 580.867 bits (1496), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MLGNEMEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL 280
            MLGNEMEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL
Sbjct:    1 MLGNEMEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL 280          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|553195329|ref|XP_005856128.1| (ferredoxin [Nannochloropsis gaditana CCMP526] >gi|422292963|gb|EKU20264.1| ferredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    6 MEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL 280
            MEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL
Sbjct:    1 MEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGTGRKRVDL 275          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|1210513950|dbj|GAX27249.1| (ferredoxin [Fistulifera solaris])

HSP 1 Score: 208.379 bits (529), Expect = 1.198e-61
Identity = 102/177 (57.63%), Postives = 123/177 (69.49%), Query Frame = 0
Query:   89 LQETPSHQFVDRDEE-GTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGS----DGLLSSSGGDQGM---QEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRR 257
            L    SH  V+ D+E G   + + VYVDE+TCIGCTNCAM A +TFYM+ EHGRARVFQQW D   TIQ AIETCPVDCIHYVP+EEL +LE ER  M IN+KARLV      + L    GG       Q+ISGN   RC NCPSRGC NCPMFGVG+NPEY+++++   ++  R+R
Sbjct:  185 LATVESHTRVEIDDETGEPVRLQMVYVDEHTCIGCTNCAMIAQSTFYMNPEHGRARVFQQWGDDDETIQIAIETCPVDCIHYVPYEELVKLEIERRDMNINFKARLVSQAENGNSLSHRVGGANRFTAPQKISGNSAPRCNNCPSRGCKNCPMFGVGKNPEYEKREKARKERLARKR 361          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|1210513312|dbj|GAX27709.1| (ferredoxin [Fistulifera solaris])

HSP 1 Score: 208.379 bits (529), Expect = 1.260e-61
Identity = 103/177 (58.19%), Postives = 123/177 (69.49%), Query Frame = 0
Query:   89 LQETPSHQFVDRDEE-GTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGS----DGLLSSSGGDQ---GMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRR 257
            L    SH  V+ DEE G   + + VYVDE+TCIGCTNCAM A +TFYM+ EHGRARVFQQW D   TIQ AIETCPVDCIHYVP+EEL +LE ER  M IN+KARLV      + L    GG       Q+ISGN   RC NCPSRGC NCPMFGVG+NPEY+++++   ++  R+R
Sbjct:  195 LATVESHTRVEIDEETGEPVRLQMVYVDEHTCIGCTNCAMIAQSTFYMNPEHGRARVFQQWGDDDETIQIAIETCPVDCIHYVPYEELVKLEIERRDMNINFKARLVSQAENGNSLSHRVGGANRFTAPQKISGNSAPRCNNCPSRGCKNCPMFGVGKNPEYEKREKARKERLARKR 371          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|298714578|emb|CBJ27569.1| (ferredoxin (cyanobacterial type ferredoxin family) [Ectocarpus siliculosus])

HSP 1 Score: 211.46 bits (537), Expect = 1.407e-61
Identity = 100/177 (56.50%), Postives = 126/177 (71.19%), Query Frame = 0
Query:   89 LQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEY-QRKQRQIAQKRERRRASKDNSS 264
            L+  PS   V +DE G   + RFVYVDEYTCIGCT+C   AP+TF+M++E GRARV+QQ +D    +QTAI TCPVDCIHYV F EL RLEKER G++IN+KA+LVG+D          GMQ ISG+   RC NCPS+GC+NCPMF VG NPEY +RK+ + A++  RR+  K+  S
Sbjct:  322 LKVAPSSSLVKKDENGVPLEDRFVYVDEYTCIGCTHCNHQAPSTFFMEEEFGRARVYQQGRDTADAVQTAILTCPVDCIHYVDFPELVRLEKEREGISINFKAKLVGND----HDNVANGMQRISGDGGMRCDNCPSKGCYNCPMFSVGNNPEYTKRKEERKAKRIARRKKEKEELS 494          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|397620706|gb|EJK65860.1| (hypothetical protein THAOC_13242 [Thalassiosira oceanica])

HSP 1 Score: 199.519 bits (506), Expect = 2.318e-58
Identity = 119/295 (40.34%), Postives = 163/295 (55.25%), Query Frame = 0
Query:    1 MLGNEMEGVKDKSGEEDGTGFSVVRKRGVVAGPGGYEDIGPEDIAELQRKQRQAEQASKMMASGASAAQLSAYTGIKLVE------------------LETGFTPKLQE------TPSHQFVDRDEEGTLKQARF--VYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLV---------GSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASK 260
            ++  E++ V D+ G E+           V+AG      I  ++++ + ++  +A++A +M   G SA  +S+  GI   E                   +TGF  +L E        SH  V+ DE+ T +  R   VYVDE +CIGCTNCA  A +TF+M+ EHGRARVFQQW D   T+Q AI+TCPV+CIHYVP++EL+ LE ER G  IN KARLV         G       +G   G Q+ISGN   RC NCP RGC NCPMFGVG+NPE+Q+++    +K  +R   K
Sbjct:   73 IVETEVQNVADEDGGEEAW-------LDVLAG------ISADEVSFMAKEAERADKARQMNELGYSAESISSTLGIATDEGMEIDQDNEVFQAFKEETAKTGFGLQLDEEVDMELVESHTTVEWDED-TDEPVRLQMVYVDEVSCIGCTNCACIAQSTFFMEGEHGRARVFQQWGDDDETVQVAIDTCPVNCIHYVPYDELKSLEIERRGQNINNKARLVSQAENASGIGPQATYGGAGAFTGQQKISGNMGSRCNNCPGRGCANCPMFGVGKNPEFQKREAARKEKIAQREMQK 353          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|1189384477|gb|OSX71709.1| (hypothetical protein BU14_0507s0007 [Porphyra umbilicalis])

HSP 1 Score: 162.155 bits (409), Expect = 2.856e-46
Identity = 84/166 (50.60%), Postives = 108/166 (65.06%), Query Frame = 0
Query:  110 RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSDGLLSSSGGDQGMQE--ISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSEGGSGSGGT 273
            RFVYVDE  CIGCT+CA TA +TF++DDE GRAR F+Q  D P T+  AI+TCPV+CI+YV F++L  LE+ER G  IN  ARLVG DG+   S G +G  E  +      RC +CP RGC  CP++GVG NPEY RK     + R  R+A++   +E G   G +
Sbjct:    7 RFVYVDEVDCIGCTHCAATARHTFFIDDEWGRARAFRQDGDDPETVAEAIDTCPVNCIYYVSFDDLVTLEREREGQIINNAARLVGGDGV---SEGPRGTSEADVMRTGGIRCEDCPGRGCAECPLYGVGRNPEYLRK----VEARASRQAARTRRNEEGGERGAS 165          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|676398131|ref|XP_009042343.1| (hypothetical protein AURANDRAFT_72808, partial [Aureococcus anophagefferens] >gi|323446977|gb|EGB02960.1| hypothetical protein AURANDRAFT_72808, partial [Aureococcus anophagefferens])

HSP 1 Score: 161.77 bits (408), Expect = 2.558e-41
Identity = 78/154 (50.65%), Postives = 101/154 (65.58%), Query Frame = 0
Query:   94 SHQFVDRDEEG------TLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTI--NYKARLVGSDGL-LSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGE 238
            SH+ +D DE+G      +      VYVDE TC+GCT CA  AP TF M D+HGRAR F Q  D   TI+ AI TCPV CIHYVP++EL  LE+ R  + +  N+K RLVG++GL +++ G  + +QEIS N   RC NCP+  C +CPMFGVG+
Sbjct:  545 SHELIDEDEDGDPVSLCSSFTYTAVYVDEATCVGCTMCATIAPQTFLMTDDHGRARSFNQEGDDEETIREAISTCPVSCIHYVPWDELVALERNREAVMLSYNFKGRLVGNEGLGIAADGAGEALQEISTNSALRCNNCPTNECRDCPMFGVGD 698          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|546314031|ref|XP_005715466.1| (unnamed protein product [Chondrus crispus] >gi|507111944|emb|CDF35647.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 144.05 bits (362), Expect = 1.361e-37
Identity = 80/187 (42.78%), Postives = 112/187 (59.89%), Query Frame = 0
Query:   77 KLVELETGFTPKLQETPSHQFVDRDEEGTLKQARFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLV-GSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDN 262
            ++ + +T  +  L    S + V+ DE+G   + R+VYV+E  CIGCT+CA TA  TF+M+ E GRARVF Q  D    ++ AI TCPV+CI+YV + +L  LE  R    IN  ARLV GSD   S  G  +     SG    RC +CP RGC  CP+FGVGENPEY + ++     R+ ++ +K++
Sbjct:  116 EITQADTTLSNPLGLKKSFEIVELDEDGMGPRDRYVYVEERDCIGCTHCATTATGTFFMESEWGRARVFNQSGDTEGDVEVAIGTCPVNCIYYVDWNDLVALENMRDDQVINNTARLVGGSDPSGSRKGTTKTKVMDSGI--MRCEDCPGRGCPQCPLFGVGENPEYLKMKKM----RDAKKTAKND 296          
BLAST of EWM25866.1 vs. NCBI_GenBank
Match: gi|922869770|gb|KOO35815.1| (ferredoxin [Chrysochromulina sp. CCMP291])

HSP 1 Score: 142.124 bits (357), Expect = 6.901e-37
Identity = 81/181 (44.75%), Postives = 107/181 (59.12%), Query Frame = 0
Query:   92 TPSHQFVDRDEEGTLKQA--RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAG----MTI-NYKARLVGSDGLLSSSGGDQGMQEISGNKDFRCGNCPSRGCFNCPMFGVGENPEYQRKQRQIAQKRERRRASKDNSSE 265
             PSH  ++ DEE T K    R  YVDE TCIGC NCA  A NTF+M+D+ G+ARV+QQ  D    I  AI+TCPV+CIHYV  E+L  LE+ER      +TI NY +      G   +    + +   +     RC NCPSRGC  CPMFGVG+NP Y  +   + ++R +R AS + ++E
Sbjct:   29 VPSHMRLELDEE-TKKPVLPRMTYVDEQTCIGCKNCACVAKNTFFMEDDFGKARVYQQGGDTVEDIAIAIDTCPVNCIHYVSHEDLVILEQERMAREGDVTINNYGSFKQAWTGGALAVPKTKALFYNNPAMGMRCNNCPSRGCRECPMFGVGQNPIYLER---LEERRLKREASGEAAAE 205          
The following BLAST results are available for this feature:
BLAST of EWM25866.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107734|gb|EWM25866.1|0.000e+0100.00ferredoxin [Nannochloropsis gaditana][more]
gi|553195329|ref|XP_005856128.1|0.000e+0100.00ferredoxin [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|1210513950|dbj|GAX27249.1|1.198e-6157.63ferredoxin [Fistulifera solaris][more]
gi|1210513312|dbj|GAX27709.1|1.260e-6158.19ferredoxin [Fistulifera solaris][more]
gi|298714578|emb|CBJ27569.1|1.407e-6156.50ferredoxin (cyanobacterial type ferredoxin family)... [more]
gi|397620706|gb|EJK65860.1|2.318e-5840.34hypothetical protein THAOC_13242 [Thalassiosira oc... [more]
gi|1189384477|gb|OSX71709.1|2.856e-4650.60hypothetical protein BU14_0507s0007 [Porphyra umbi... [more]
gi|676398131|ref|XP_009042343.1|2.558e-4150.65hypothetical protein AURANDRAFT_72808, partial [Au... [more]
gi|546314031|ref|XP_005715466.1|1.361e-3742.78unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|922869770|gb|KOO35815.1|6.901e-3744.75ferredoxin [Chrysochromulina sp. CCMP291][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4811rna4811Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications