EWM25879.1, cds4793 (CDS) Nannochloropsis gaditana

Overview
NameEWM25879.1
Unique Namecds4793
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:412964..415921 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25879.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g15.5571.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:412964..415921 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|553195208|ref|XP_005856101.1| (hypothetical protein NGA_0332100 [Nannochloropsis gaditana CCMP526] >gi|422292936|gb|EKU20237.1| hypothetical protein NGA_0332100 [Nannochloropsis gaditana CCMP526] >gi|585107747|gb|EWM25879.1| hypothetical protein Naga_100054g15 [Nannochloropsis gaditana])

HSP 1 Score: 2024.98 bits (5245), Expect = 0.000e+0
Identity = 985/985 (100.00%), Postives = 985/985 (100.00%), Query Frame = 0
Query:    1 MARLCSTSVSAVLLLLVSNSGWTAGKTELRQTFSGLAQAAESNPGNQFGGAFLNGASAIAKGLAGNAATDNIPSSTSAGATDIIKDDLGPDVLPTPPENNNVANKASLGGLVGGPGTSLGDGLSWNFGSKGMIQMLTGFFMTFMSGSANPNSALNVYGSALMSQDPVEISAAFGKLLTSLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKATVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPCNPKNDITIENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGADMITIISGTLPPASDSRYASISLVNLYPPGRNVYSVSDQSLRNFYWDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGYEQSLEQVRYACEAEKDCSNPKFFEQQMGDYYPRISYLSCSSSGLAPAPIKNENLTFPEPRLPRPAFQGLWTSLAGNDLLGVESIPQASVTMAALQGSDVYVNGKLAGRATDNVKVVSKQTASFGWSPIQSVYYDPENPVTANPVIREYMDADGNPVQLELVPTPAKFLPDEVLFAVKVPITGGLKAFFATHDVCGTSRSSAAGWKCIATTFPDANWTLPSFDDSKWLPAKALKKGEACSGMPTDCTALPPDAQGIWADTCTGSGGPNQGNVYCRLRVPQTCDLTARAGSDDRVKTWCPDLANAVATARFASPTLHWLYANGLEVGGDQTMVIPAGTTSFALDPAAPTVVLAFKAVDDTRKVVKSFIKGQFNLCGFEHVTDASWRCAPSEPFTDDWLQPGFDDSEWDPVRVVDGFPWQPNPSAGMSPESSWVWAQSGIQTFCRLEVPNPVYGAKQFFEIA 985
            MARLCSTSVSAVLLLLVSNSGWTAGKTELRQTFSGLAQAAESNPGNQFGGAFLNGASAIAKGLAGNAATDNIPSSTSAGATDIIKDDLGPDVLPTPPENNNVANKASLGGLVGGPGTSLGDGLSWNFGSKGMIQMLTGFFMTFMSGSANPNSALNVYGSALMSQDPVEISAAFGKLLTSLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKATVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPCNPKNDITIENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGADMITIISGTLPPASDSRYASISLVNLYPPGRNVYSVSDQSLRNFYWDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGYEQSLEQVRYACEAEKDCSNPKFFEQQMGDYYPRISYLSCSSSGLAPAPIKNENLTFPEPRLPRPAFQGLWTSLAGNDLLGVESIPQASVTMAALQGSDVYVNGKLAGRATDNVKVVSKQTASFGWSPIQSVYYDPENPVTANPVIREYMDADGNPVQLELVPTPAKFLPDEVLFAVKVPITGGLKAFFATHDVCGTSRSSAAGWKCIATTFPDANWTLPSFDDSKWLPAKALKKGEACSGMPTDCTALPPDAQGIWADTCTGSGGPNQGNVYCRLRVPQTCDLTARAGSDDRVKTWCPDLANAVATARFASPTLHWLYANGLEVGGDQTMVIPAGTTSFALDPAAPTVVLAFKAVDDTRKVVKSFIKGQFNLCGFEHVTDASWRCAPSEPFTDDWLQPGFDDSEWDPVRVVDGFPWQPNPSAGMSPESSWVWAQSGIQTFCRLEVPNPVYGAKQFFEIA
Sbjct:    1 MARLCSTSVSAVLLLLVSNSGWTAGKTELRQTFSGLAQAAESNPGNQFGGAFLNGASAIAKGLAGNAATDNIPSSTSAGATDIIKDDLGPDVLPTPPENNNVANKASLGGLVGGPGTSLGDGLSWNFGSKGMIQMLTGFFMTFMSGSANPNSALNVYGSALMSQDPVEISAAFGKLLTSLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKATVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPCNPKNDITIENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGADMITIISGTLPPASDSRYASISLVNLYPPGRNVYSVSDQSLRNFYWDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGYEQSLEQVRYACEAEKDCSNPKFFEQQMGDYYPRISYLSCSSSGLAPAPIKNENLTFPEPRLPRPAFQGLWTSLAGNDLLGVESIPQASVTMAALQGSDVYVNGKLAGRATDNVKVVSKQTASFGWSPIQSVYYDPENPVTANPVIREYMDADGNPVQLELVPTPAKFLPDEVLFAVKVPITGGLKAFFATHDVCGTSRSSAAGWKCIATTFPDANWTLPSFDDSKWLPAKALKKGEACSGMPTDCTALPPDAQGIWADTCTGSGGPNQGNVYCRLRVPQTCDLTARAGSDDRVKTWCPDLANAVATARFASPTLHWLYANGLEVGGDQTMVIPAGTTSFALDPAAPTVVLAFKAVDDTRKVVKSFIKGQFNLCGFEHVTDASWRCAPSEPFTDDWLQPGFDDSEWDPVRVVDGFPWQPNPSAGMSPESSWVWAQSGIQTFCRLEVPNPVYGAKQFFEIA 985          
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 145.206 bits (365), Expect = 2.273e-33
Identity = 123/463 (26.57%), Postives = 204/463 (44.06%), Query Frame = 0
Query:  170 SAAFGKLLTSLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKA--TVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNT-GASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGI---KSDGWGGVPPPALRVKAF--SVLATGLWFNLAPCNPKNDITIENFIE------NRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGADMITIISGTLPPA---------------SDSRYASISLVNLYPPGRNVYSVSDQSLRNFY---------WDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGYE--------QSLEQVRYACEA----EKDCSNPKFFEQQMGDYYPRISYLSCSSSGLAPAPIKNENLTF 582
            S A   L  S++ +CA+Q  S G   ++ F DG    H+ FVP  +    V   +G++P  R FSY +Y    + +  V  + D ++ +  G NPF A PG T G  G Y ++VT +G QG+PNE+ T A G   +  +G  ++ RV   D     K+D WG V PP ++ K F  S    GLW+ L  C P N      FI       +R+   E  +     C  +N  + F+     Q                       +++ +I+GTLPP+               S++RY S+S  +L  PG  + ++ D  + +FY         W+  +++  Y I+ A +  +  +CG     A    ++ + +      SYP +V RE+++            QS+  ++ ACE+       C    F    M ++YP+++Y  C   G + A   N++ T+
Sbjct:   30 SYALAGLNASIEFNCAWQ-ASVGLNFNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYD--PKSLDPVASVRDYEIKSVRGVNPF-ATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASG---SNATGAFVLLRVYAYDKQSPDKTDIWGAVAPPVVKYKLFNPSSGQGGLWYTLDQCTPNNTKIASQFISTIATGYSRVLATENKAGAN-PCPTWNSRDQFLDGGGVQ----------------------GNLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNL-RNSRQYKIVAAADLASAKRCGHLTRDA----MFLSTWGQTARVSYPALVLREILSQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDCLQGGKSVAAPYNQSATY 457          
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|585108896|gb|EWM26805.1| (protein of unknown function DUF1214 [Nannochloropsis gaditana])

HSP 1 Score: 107.071 bits (266), Expect = 7.099e-20
Identity = 110/467 (23.55%), Postives = 198/467 (42.40%), Query Frame = 0
Query:  179 SLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPT-TKATVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGI------KSDGWGGVPPPALRVKAFSVLATGLW------FNLAPCNPKNDIT--IENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQY------FKTPDENHIISCGN-RALLPPGADMITIISGTLP--PAS-------------DSRYASISLVNLYPPGRNVYSVSDQSLRNFYWDQGKSAV-------NYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPG----------IVYREMM------------------TDGYEQSLEQVR-YACEAEKDC--SNPKFFEQQMGDYYPRISYLSCSSSGL 570
            +++  CA+  ++     ++ F D +   H+   P    + +   +GEFP SR FS  TY   ++  S +  + D+++V S G N F          G + + ++ DG +GFPNE+     G+ ++  +G +++ R+   D +      K   WG   PP + ++    L    W        L P      IT  +   + +RL ++    +  V C + N+ + F+     +       F   D  ++++C N R       D+I +++  LP  P S             D RYAS+S+ +L PPG  + +  D  +R+FY+D   + +       N ++++A N+ AL++C +    +    +      D LE    G          IVYRE++                   D Y+ S++  R   C    D    NP      M ++YPR+S+ +CS SG+
Sbjct:  217 AIETDCAWTASADYQTANLFFPDAQSVYHLMVFPNFGPSDLAMIEGEFPDSRYFSVQTY---DENFSPIAGLKDLEVVPSEGVNSFARKSPLQIRDGRFKIVLSKDGNRGFPNELPINV-GNFSSTTTGYVMM-RMYGVDPLAKTNANKLAKWGYKDPPTISLRTAGSLTPTTWDQGWKKMPLCPDTNAEIITKAVTTAVNSRL-IQMNFKEDSVSCSIENVKDGFMLMSRERASSSRAPFVNADGGYLMACANSRPEYIKNNDLIAVVNTFLPSTPYSKFKARFIGSPETYDMRYASLSVYDLRPPGPVLRTFPDAEIRDFYYDLYGAELWEEGFQRNVSMVVASNQAALDRCKVDTSESLILTL------DDLEEQASGEPTSPPEWWSIVYRELIPQSQIINGTNAASYGMKEQDIYKTSIQDAREIMCGENGDTCDRNPYRAASIMKEHYPRVSWYTCSPSGV 671          
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 93.5893 bits (231), Expect = 4.875e-16
Identity = 66/187 (35.29%), Postives = 97/187 (51.87%), Query Frame = 0
Query:  170 SAAFGKLLTSLDMSCAFQMTSGGDGVDMKFRDGKEALHIQFVPTTKA--TVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNT-GASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMADGI---KSDGWGGVPPPALRVKAF--SVLATGLWFNL 348
            S A   L  S++ +CA+Q  S G   ++ F DG    H+ FVP  +    V   +G++P  R FSY +Y    + +  V  + D ++ +  G NPF A PG T G  G Y ++VT +G QG+PNE+ T A G   +  +G  ++ RV   D     K+D WG V PP ++ K F  S    GLW+ L
Sbjct:  176 SYALAGLNASIEFNCAWQ-ASVGLNFNIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYD--PKSLDPVASVRDYEIKSVRGVNPF-ATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASG---SNATGAFVLLRVYAYDKQSPDKTDIWGAVAPPVVKYKLFNPSSGQGGLWYTL 355          
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|585112016|gb|EWM29475.1| (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 92.0485 bits (227), Expect = 7.866e-16
Identity = 94/395 (23.80%), Postives = 165/395 (41.77%), Query Frame = 0
Query:  218 VFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADG-------------DVTNELSGIIIVYRVIMADGIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPCNPKNDITIENFIENRLALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIIS---CGNRALLPP-----GADMITIISGTLPPAS----------------DSRYASISLVNLYPPGRNVYSVSDQSLRNFY---WDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGY-------EQSLEQVRYACEAEKDCSNPKFFEQQMGDYYPRISYLSC 565
            V+     FP+   FSY TY++    ++    + D+ +  S G NP+       GA G+Y++YVT DG +G+PNE++  ++              D  + LS  +++ R+   +   S  WGGV  P +   +++      W  L PC   +D T   F  NR   + G +       +++          +Q+++     H++S     + AL P      G + + +I GT P  +                 +RY S +  +++ PG    S++ Q + NFY   WD+      Y I+ A +   +  CGL   P   +  Y     +    + P ++ REM+           +QS+E V   C  E  C +  F +  +GD YP +   +C
Sbjct:   54 VYKISASFPRVVYFSYETYSLRGHPLT---SLPDLRIDPSWGKNPYREETTEEGA-GTYEIYVTRDGNKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLS--VVMLRLYTTEQPPS-VWGGVDRPVI---SYTDDLGQTWKELQPC---SDTTRYQF--NRAMRQIGWTVYDFRYLIYH----------SQWYRL-RSCHLLSKREADHPALFPDVNVQLGGNFVMVIEGTAPLTATGLFEGPRPVWNVTNYSTRYWSFAAADVFVPGPTYSSLTAQDMENFYGKGWDR-----RYKIVGATSIDIVKACGLDD-PHALFLPYKNELMNNNPPAVPAVIEREMLARHMAMGLPSDKQSIEYVTSNCGKENKCLSIDFMKASLGDQYPSLQVYTC 416          
BLAST of EWM25879.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 78.5666 bits (192), Expect = 3.028e-11
Identity = 90/414 (21.74%), Postives = 158/414 (38.16%), Query Frame = 0
Query:  212 PTTKATVFNFKGEFPKSRAFSYATYAVANQQVSFVDMISDVDMVASTGSNPFTAGPGNTGASGSYDLYVTPDGKQGFPNEIKTFADGDVTNELSGIIIVYRVIMAD-------GIKSDGWGGVPPPALRVKAFSVLATGLWFNLAPCNPKNDITIENFIENR---------LALKEGMSDVKVECDVFNMDNNFVYYDDAQYFKTPDENHIISCGNRALLPPGADMITIISGTLPPA---------------SDSRYASISLVNLYPPGRNVYSVSDQSLRNFY--------WDQGKSAVNYTIIMAKNKLALNKCGLSKLPANWYQVYWAGFADALEGSYPGIVYREMMTDGYEQSL-------EQVRYACEA---EKDCSNPKFFEQQMGDYYPRISYLSCSSSGLAPAPIK 576
            P  +  V+  +G+FP  R FS+  Y  + Q +S    + D D+  S+G NPF          G+Y++YV+ DG +G+PNE+      D T+  +  ++ +R+ + D         K+  WG V  P + +        G W  +  C+ +     E  IEN            L+ G      E  +F+ + N +        +  +EN+I  C  + +     D I  I+G LP                  DSRY S +  +  P   +  ++ D+ + N Y        WD+      Y ++   +     KCGL     +                 P IV R ++  G ++           +R  CE+   +  C   +  +  + ++YP +   +C    L PA + 
Sbjct:  152 PHKEEEVYRIRGKFPYVRYFSFTVYDASLQSIS---TLHDTDIRPSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALR-PDSTSPYA--LLAFRLQLLDPRAGEDRSGKNREWGYVDMPLVEILNHR---NGEWDIIRRCSDEFQARTEEVIENLDLTFNTWWPKNLQIGTECNATEFSLFDPEQNPIIRRGVA-VRNANENYIFWCMPKEI--GKKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYSTDPFGSDWDRM-----YNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGGGKERRGTEGVANVNLRNECESPTGKLLCDPARSAKVLLQEFYPLVQIWTCDYQNLKPARLH 548          
The following BLAST results are available for this feature:
BLAST of EWM25879.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|553195208|ref|XP_005856101.1|0.000e+0100.00hypothetical protein NGA_0332100 [Nannochloropsis ... [more]
gi|585102674|gb|EWM22223.1|2.273e-3326.57hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
gi|585108896|gb|EWM26805.1|7.099e-2023.55protein of unknown function DUF1214 [Nannochlorops... [more]
gi|553186469|ref|XP_005854425.1|4.875e-1635.29hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
gi|585112016|gb|EWM29475.1|7.866e-1623.80hypothetical protein Naga_100128g9 [Nannochloropsi... [more]
gi|585101524|gb|EWM21339.1|3.028e-1121.74hypothetical protein Naga_100075g21 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4805rna4805Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications