EWM25876.1, cds4787 (CDS) Nannochloropsis gaditana

Overview
NameEWM25876.1
Unique Namecds4787
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:394099..394113 -
Alignment locationCM002464.1:393853..393898 -
Alignment locationCM002464.1:392022..393497 -
Alignment locationCM002464.1:391413..391828 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25876.1
Productatp dependent rna helicase
Orig transcript idgnl|cribi|Naga_100054g8.5568.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:394099..394113 -
CM002464.1supercontigCM002464.1:393853..393898 -
CM002464.1supercontigCM002464.1:392022..393497 -
CM002464.1supercontigCM002464.1:391413..391828 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|585107744|gb|EWM25876.1| (atp dependent rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 1313.9 bits (3399), Expect = 0.000e+0
Identity = 650/650 (100.00%), Postives = 650/650 (100.00%), Query Frame = 0
Query:    1 MQHAGNKQSQDLVRVLLMQHGGKYVPPALRGESGAENDETPPTSLTEVKAGGMDHSESSSANNHEPSEAIHPTSGAHQRHQQMPPYPQNTPPSGPMGDYRGSSYGGGGGGYGNQGGGYGYGGRGGGGRFDGGGGGYGRGGGAYRGGNGRGYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGGRRPRGGGRGGARFGARDFRKDRGGGDGYDRGRGGGYGGGYGGG 650
            MQHAGNKQSQDLVRVLLMQHGGKYVPPALRGESGAENDETPPTSLTEVKAGGMDHSESSSANNHEPSEAIHPTSGAHQRHQQMPPYPQNTPPSGPMGDYRGSSYGGGGGGYGNQGGGYGYGGRGGGGRFDGGGGGYGRGGGAYRGGNGRGYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGGRRPRGGGRGGARFGARDFRKDRGGGDGYDRGRGGGYGGGYGGG
Sbjct:    1 MQHAGNKQSQDLVRVLLMQHGGKYVPPALRGESGAENDETPPTSLTEVKAGGMDHSESSSANNHEPSEAIHPTSGAHQRHQQMPPYPQNTPPSGPMGDYRGSSYGGGGGGYGNQGGGYGYGGRGGGGRFDGGGGGYGRGGGAYRGGNGRGYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGGGGGRRPRGGGRGGARFGARDFRKDRGGGDGYDRGRGGGYGGGYGGG 650          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|695381073|ref|XP_009516981.1| (hypothetical protein PHYSODRAFT_323195 [Phytophthora sojae] >gi|348689892|gb|EGZ29706.1| hypothetical protein PHYSODRAFT_323195 [Phytophthora sojae])

HSP 1 Score: 677.552 bits (1747), Expect = 0.000e+0
Identity = 325/445 (73.03%), Postives = 380/445 (85.39%), Query Frame = 0
Query:  154 GGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA 598
              RVN  G+HGDLRP++RLE +LF    A+++GINFDKYDDIPVETSGE  P+P++ F+   +GP+++ NL LC YSKPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P ALVL+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L++ENG +IP FL+ MA
Sbjct:  100 AARVNEVGYHGDLRPNERLERELF--GDAKSSGINFDKYDDIPVETSGENVPDPVSEFSATELGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPEVGHGRSRKIFPSALVLSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLACIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGNALSMMNEKNRNIAREMYELMAENGQEIPAFLDQMA 541          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|567948431|gb|ETK74179.1| (hypothetical protein L915_18980 [Phytophthora parasitica] >gi|567977098|gb|ETL27609.1| hypothetical protein L916_18878 [Phytophthora parasitica] >gi|570938451|gb|ETP03708.1| hypothetical protein F441_19382 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 338/475 (71.16%), Postives = 396/475 (83.37%), Query Frame = 0
Query:  155 GRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA-YSGGGGGGGRRPRGGGRGGARFGARDFRKD 628
             RVN  G+HGDLR ++RLE +LF    A+++GINFDKYDDIPVETSGE  PEP+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L+SENG +IP FL+ MA     GGG   R   GGR  +RFGARD+R +
Sbjct:  111 ARVNELGYHGDLRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPEPVTEFSEEQLGPEVIRNLELCKYTKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMSENGQEIPAFLDQMANSGYRGGGRSGRGGRGGRSSSRFGARDYRNE 582          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|675177173|ref|XP_008897471.1| (hypothetical protein PPTG_05621 [Phytophthora parasitica INRA-310] >gi|568006590|gb|ETL80844.1| hypothetical protein L917_18705 [Phytophthora parasitica] >gi|568103304|gb|ETN17975.1| hypothetical protein PPTG_05621 [Phytophthora parasitica INRA-310])

HSP 1 Score: 674.47 bits (1739), Expect = 0.000e+0
Identity = 338/475 (71.16%), Postives = 396/475 (83.37%), Query Frame = 0
Query:  155 GRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA-YSGGGGGGGRRPRGGGRGGARFGARDFRKD 628
             RVN  G+HGDLR ++RLE +LF    A+++GINFDKYDDIPVETSGE  PEP+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L+SENG +IP FL+ MA     GGG   R   GGR  +RFGARD+R +
Sbjct:  111 ARVNELGYHGDLRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPEPVTEFSEEQLGPEVIRNLELCKYTKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMSENGQEIPAFLDQMANSGYRGGGRSGRGGRGGRSSSRFGARDYRNE 582          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|566010898|gb|ETI33809.1| (hypothetical protein F443_19561 [Phytophthora parasitica P1569] >gi|568036438|gb|ETM34048.1| hypothetical protein L914_18795 [Phytophthora parasitica] >gi|570968738|gb|ETP31857.1| hypothetical protein F442_19333 [Phytophthora parasitica P10297])

HSP 1 Score: 674.47 bits (1739), Expect = 0.000e+0
Identity = 338/475 (71.16%), Postives = 396/475 (83.37%), Query Frame = 0
Query:  155 GRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA-YSGGGGGGGRRPRGGGRGGARFGARDFRKD 628
             RVN  G+HGDLR ++RLE +LF    A+++GINFDKYDDIPVETSGE  PEP+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L+SENG +IP FL+ MA     GGG   R   GGR  +RFGARD+R +
Sbjct:  111 ARVNELGYHGDLRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPEPVTEFSEEQLGPEVIRNLELCKYTKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMSENGQEIPAFLDQMANSGYRGGGRSGRGGRGGRSSSRFGARDYRNE 582          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|570314687|gb|ETO62635.1| (hypothetical protein F444_19513 [Phytophthora parasitica P1976])

HSP 1 Score: 670.618 bits (1729), Expect = 0.000e+0
Identity = 337/475 (70.95%), Postives = 395/475 (83.16%), Query Frame = 0
Query:  155 GRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA-YSGGGGGGGRRPRGGGRGGARFGARDFRKD 628
             RVN  G+HGDLR ++RLE +LF    A+++GINFDKYDDIPVETSGE  PEP+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCY TG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L+SENG +IP FL+ MA     GGG   R   GGR  +RFGARD+R +
Sbjct:  111 ARVNELGYHGDLRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPEPVTEFSEEQLGPEVIRNLELCKYTKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYSTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMSENGQEIPAFLDQMANSGYRGGGRSGRGGRGGRSSSRFGARDYRNE 582          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|953490579|emb|CEG46233.1| (dead deah box rna [Plasmopara halstedii])

HSP 1 Score: 668.692 bits (1724), Expect = 0.000e+0
Identity = 339/521 (65.07%), Postives = 398/521 (76.39%), Query Frame = 0
Query:  106 GGGGGYGNQGGGY-GYGGRGGGGRFDGGGGGYGRGGGAYRGGNGR----------GYGGGGR-----------------VNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA 598
            GG  GY  + G   GYG R G            RG G  R  N R          GY    R                 VN  G+HGD+R ++RLE +LF    A+++GINFDKYDDIPVETSGE  P+P+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L++ENG +IP FL+ MA
Sbjct:   38 GGNSGYDRRSGSREGYGTRSGSNE---------RGDGPPRATNSRWSGFEVDRRGGYNDDRRSGYGGGYGRGGGAGIARVNELGYHGDVRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPDPVNDFSEEQLGPEVIRNLELCKYAKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRTRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMAENGQEIPAFLDQMA 546          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|301120023|ref|XP_002907739.1| (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 321/444 (72.30%), Postives = 377/444 (84.91%), Query Frame = 0
Query:  155 GRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA 598
             RVN  G+HGD+R ++RLE +LF    A+++GINFDKYDDIPVETSGE  P+P+  F E+ +GP+++ NL LC YSKPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFP +IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L++ENG +IP FL+ MA
Sbjct:  112 ARVNELGYHGDVRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPDPVTEFAEEQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMAENGQEIPAFLDQMA 552          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|970664483|gb|KUG01383.1| (ATP-dependent RNA helicase ded1 [Phytophthora nicotianae])

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 343/492 (69.72%), Postives = 401/492 (81.50%), Query Frame = 0
Query:  138 RGGGAYRGGNGRGYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMA-YSGGGGGGGRRPRGGGRGGARFGARDFRKD 628
            RGGGA             RVN  G+HGDLR ++RLE +LF    A+++GINFDKYDDIPVETSGE  PEP+  F+E+ +GP+++ NL LC Y+KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR G   PP  G    RK++P  L+L+PTRELASQI DEA+KFCYCTG+ PVVIYGGAEV  QLRELERGCDLLVATPGRLVDL+ER RISL  IRFLILDEADRMLDMGFEPQIRRIVEQE MP +RQTFMFSATFPR+IQRLA+DF++DYIFL VGRVGSASKDV Q +EY+E +DK  YLV FL+Q  D GLIL+FVE KR AD+LE +L ++GFP  SIHGD++QRERE+AL  FK+G+ PVLVATDVAARGLDI  VTQVIN+DLPNNIDDYVHRIGRTGRVGNVG+ALS+MNEKN+NIARE+++L+SENG +IP FL+ MA     GGG   R   GGR  +RFGARD+R +
Sbjct:   39 RGGGA-------------RVNELGYHGDLRRNERLEHELF--GDAKSSGINFDKYDDIPVETSGENVPEPVTEFSEEQLGPEVIRNLELCKYTKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQEDMPRERQTFMFSATFPREIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDYLVRFLNQVQD-GLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRNIAREMYELMSENGQEIPAFLDQMANSGYRGGGRSGRGGRGGRSSSRFGARDYRNE 514          
BLAST of EWM25876.1 vs. NCBI_GenBank
Match: gi|325192175|emb|CCA26630.1| (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 330/468 (70.51%), Postives = 388/468 (82.91%), Query Frame = 0
Query:  138 RGGGAYRGGNGR-GYGGGGRVNSQGFHGDLRPDKRLEEQLFRRPHAQTTGINFDKYDDIPVETSGEGCPEPIASFTEDMVGPQLMTNLALCNYSKPTPVQKYSVPIGLADRDLMACAQTGSGKTAGFLFPTIVSMLRQGAPEPPRGGRSSGRKVYPMALVLAPTRELASQIFDEAQKFCYCTGVRPVVIYGGAEVRNQLRELERGCDLLVATPGRLVDLIERDRISLLSIRFLILDEADRMLDMGFEPQIRRIVEQEGMPTDRQTFMFSATFPRDIQRLAADFMKDYIFLAVGRVGSASKDVIQKIEYVEMHDKIHYLVTFLSQCDDSGLILIFVERKRDADYLEGLLYKQGFPCASIHGDKTQREREEALHYFKTGQCPVLVATDVAARGLDISNVTQVINYDLPNNIDDYVHRIGRTGRVGNVGHALSLMNEKNKNIARELFDLLSENGHDIPRFLEDMAYSGGGG 604
            R GG  R G  R G+G G R+N +G+HGD+R ++RLE +LF    + T+GINFDKYDDIPVETSGE  P+PI  FTE  +GP++  NL LC Y KPTPVQKYS+PIGLA RD+MACAQTGSGKT GFLFPT+ +MLR+GA +P  G  SS RK +P AL+LAPTRELASQI+DEA+KFCYCTGV PVV+YGGAEV  Q+RELERGCDLLVATPGRLVDL+ER R+SL  IRFLILDEADRMLDMGFEPQIRR+VEQE MP +RQTFMFSATFPR++QRLAADF++DYIFL VGRVGSASKDV Q+IE++E HDK  YLV FL+Q  + GLIL+FVE KR ADYLE LL ++GFP  SIHGD+TQRERE AL+ F++G+ PVLVATDVAARGLDI+ VT VIN+DLPNNIDDYVHRIGRTGR GN+GHALS+M +KN+NI+REL+ LL EN  + P +L+ MA S   G
Sbjct:   80 RYGGRDRKGYDRDGHGHGPRLNERGYHGDIRRNERLEHELF--GDSITSGINFDKYDDIPVETSGENVPDPITIFTEVELGPEVCRNLELCKYMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLREGA-KPVDGAGSSQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEVGRQVRELERGCDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRRLVEQEDMPRERQTFMFSATFPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQIEFIEPHDKEDYLVRFLNQVQE-GLILVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNSFRSGRTPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMMTDKNRNISRELYALLVENSQECPSWLDQMANSSQYG 543          
The following BLAST results are available for this feature:
BLAST of EWM25876.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107744|gb|EWM25876.1|0.000e+0100.00atp dependent rna helicase [Nannochloropsis gadita... [more]
gi|695381073|ref|XP_009516981.1|0.000e+073.03hypothetical protein PHYSODRAFT_323195 [Phytophtho... [more]
gi|567948431|gb|ETK74179.1|0.000e+071.16hypothetical protein L915_18980 [Phytophthora para... [more]
gi|675177173|ref|XP_008897471.1|0.000e+071.16hypothetical protein PPTG_05621 [Phytophthora para... [more]
gi|566010898|gb|ETI33809.1|0.000e+071.16hypothetical protein F443_19561 [Phytophthora para... [more]
gi|570314687|gb|ETO62635.1|0.000e+070.95hypothetical protein F444_19513 [Phytophthora para... [more]
gi|953490579|emb|CEG46233.1|0.000e+065.07dead deah box rna [Plasmopara halstedii][more]
gi|301120023|ref|XP_002907739.1|0.000e+072.30DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
gi|970664483|gb|KUG01383.1|0.000e+069.72ATP-dependent RNA helicase ded1 [Phytophthora nico... [more]
gi|325192175|emb|CCA26630.1|0.000e+070.51DEAD/DEAH box RNA helicase putative [Albugo laibac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4799rna4799Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications