EWM25919.1, cds4781 (CDS) Nannochloropsis gaditana

Overview
NameEWM25919.1
Unique Namecds4781
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:375380..375786 -
Alignment locationCM002464.1:374900..375287 -
Alignment locationCM002464.1:373864..373978 -
Alignment locationCM002464.1:373319..373657 -
Alignment locationCM002464.1:373065..373189 -
Alignment locationCM002464.1:372788..372943 -
Alignment locationCM002464.1:372519..372623 -
Alignment locationCM002464.1:372285..372440 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25919.1
ProductGDP-L-fucose synthetase
Orig transcript idgnl|cribi|Naga_100048g33.10291.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:375380..375786 -
CM002464.1supercontigCM002464.1:374900..375287 -
CM002464.1supercontigCM002464.1:373864..373978 -
CM002464.1supercontigCM002464.1:373319..373657 -
CM002464.1supercontigCM002464.1:373065..373189 -
CM002464.1supercontigCM002464.1:372788..372943 -
CM002464.1supercontigCM002464.1:372519..372623 -
CM002464.1supercontigCM002464.1:372285..372440 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0042351'de novo' GDP-L-fucose biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0050577GDP-L-fucose synthase activity
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR028614GDP_fucose_synth
IPR001509Epimerase_deHydtase_N
IPR016040NAD(P)-bd_dom
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|585107788|gb|EWM25919.1| (GDP-L-fucose synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1246.88 bits (3225), Expect = 0.000e+0
Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0
Query:    1 MRVSVKSLTLGIGSYLGILGGGYYWALSQREAAAKKALAEKAEDAAGKPKRFSETDRLAIFGEGASKYDKEIGTDEIVMGLNLLRWWLLRQARGKILEVAGGTGRNLDYFPKGANLTIIDLCDRMMAETERKLRKSRRGDVLFGKMDVSQMSFPDRTFDTVCDTFGLCSFEDPKVALQEMERVCKDDGQILLLEHGRSTYDWLNEILDKNSHRHTARWGCVWNRDIESLCHDAGLEVTSISRWHFGTTYMIHAKPGRREADRRKGPVTTGKHAQDMSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            MRVSVKSLTLGIGSYLGILGGGYYWALSQREAAAKKALAEKAEDAAGKPKRFSETDRLAIFGEGASKYDKEIGTDEIVMGLNLLRWWLLRQARGKILEVAGGTGRNLDYFPKGANLTIIDLCDRMMAETERKLRKSRRGDVLFGKMDVSQMSFPDRTFDTVCDTFGLCSFEDPKVALQEMERVCKDDGQILLLEHGRSTYDWLNEILDKNSHRHTARWGCVWNRDIESLCHDAGLEVTSISRWHFGTTYMIHAKPGRREADRRKGPVTTGKHAQDMSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK
Sbjct:    1 MRVSVKSLTLGIGSYLGILGGGYYWALSQREAAAKKALAEKAEDAAGKPKRFSETDRLAIFGEGASKYDKEIGTDEIVMGLNLLRWWLLRQARGKILEVAGGTGRNLDYFPKGANLTIIDLCDRMMAETERKLRKSRRGDVLFGKMDVSQMSFPDRTFDTVCDTFGLCSFEDPKVALQEMERVCKDDGQILLLEHGRSTYDWLNEILDKNSHRHTARWGCVWNRDIESLCHDAGLEVTSISRWHFGTTYMIHAKPGRREADRRKGPVTTGKHAQDMSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|298710483|emb|CBJ25547.1| (GDP-4-keto-6-deoxy-D-mannose epimerase-reductase [Ectocarpus siliculosus])

HSP 1 Score: 487.649 bits (1254), Expect = 2.587e-167
Identity = 219/312 (70.19%), Postives = 263/312 (84.29%), Query Frame = 0
Query:  285 LITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            ++TGGTGLVG GI++F+ +DP AQ++E Y+FLSSKDGDLRD   T AIFEK++P +V+HLAA VGGLF N+  KVEF+REN+LINDNVME C+ +KVEKLVSCLSTCIFPDKTTYPIDETM+HNGPPH SNEGYAYAKRM+DV++RCYK EYGCNFTS+IPTNIYG  DNF+I +GHV+PGL+HKCY A+QAG D  +WG+G PLRQFIY+ DL  L+IWTMR YH  DP+ILSVGEEDEVSI   A+ +A AM F+GNVVFDT K+DGQ+KKTA N  L+   PDF+FTS+++GL+  C WF ENY TARK
Sbjct:    1 MVTGGTGLVGCGIKEFVDTDPEAQKNEEYIFLSSKDGDLRDMESTKAIFEKYKPTHVIHLAARVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKGEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMIWTMRNYHEVDPIILSVGEEDEVSIADAAKMIASAMNFEGNVVFDTDKSDGQFKKTACNDLLKKKNPDFKFTSMQDGLKAACDWFCENYETARK 312          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|676388305|ref|XP_009037431.1| (hypothetical protein AURANDRAFT_53743 [Aureococcus anophagefferens] >gi|323452198|gb|EGB08073.1| hypothetical protein AURANDRAFT_53743 [Aureococcus anophagefferens])

HSP 1 Score: 477.633 bits (1228), Expect = 2.712e-163
Identity = 216/321 (67.29%), Postives = 266/321 (82.87%), Query Frame = 0
Query:  276 MSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            M+   K+V ++TGGTGL G  I+ ++     +++  ++VFLSSKDGDLRD+AQT AIFE+ +P +VVHLAA+VGGLF NMA+KVEFYRENML+NDNVME C+ +KVEKLVSCLSTCIFPDKT+YPIDE+M+H+G PH+SNEGYAYAKRM++VM+RCY EEYGC FT++IPTNIYGPHDNF++  GHV+PGL+HKCY+A++ GT FT+WGSG PLRQFIYS DLA L +W MR Y SAD +ILSVGEEDEVSI  +A  +  AM+F+G V+FDT KADGQYKKTASN KL+ LRPDF+FT + EGL+K   WF  NY T RK
Sbjct:    1 MAAMAKQVCMVTGGTGLYGSAIKTYVEQTA-SEQGATWVFLSSKDGDLRDRAQTEAIFERVKPTHVVHLAAMVGGLFANMAKKVEFYRENMLMNDNVMECCRIYKVEKLVSCLSTCIFPDKTSYPIDESMVHDGAPHSSNEGYAYAKRMIEVMNRCYAEEYGCKFTAVIPTNIYGPHDNFSVNGGHVVPGLIHKCYVAKRDGTPFTVWGSGTPLRQFIYSVDLAALTVWVMRSYDSADSIILSVGEEDEVSIKDVALMIRDAMKFEGEVIFDTDKADGQYKKTASNDKLKGLRPDFKFTPMREGLQKAVDWFVANYDTCRK 320          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|224012849|ref|XP_002295077.1| (gdp-fucose synthetase [Thalassiosira pseudonana CCMP1335] >gi|220969516|gb|EED87857.1| gdp-fucose synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 477.633 bits (1228), Expect = 2.870e-163
Identity = 217/323 (67.18%), Postives = 269/323 (83.28%), Query Frame = 0
Query:  274 QDMSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
             D+ +  K  +++TGG+GLVG+ I+ +  ++P+   +E+++FLSSKDGDLRD+ +T AIF++ +P +V+HLAA VGGLF NM QKVEFYREN LINDN+ME C+   V KLVS LSTCIFPDKTTYPIDETM+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGP+DNF+I++GHVIPGL+HKCY A++ GTDFTIWGSG PLRQFIYS DLAEL +W MR+YHS DP+ LSV E  EV+I  +A  VAKAM+F+G VVFDTSKADGQ+KKTA N KLR LRPD++FTS+E+G++K+  WF ENY TARK
Sbjct:    4 HDVGRTTKSTIMVTGGSGLVGQAIKTYTLANPLP--NETWIFLSSKDGDLRDRKETDAIFDRVKPTHVIHLAAKVGGLFANMKQKVEFYRENTLINDNIMENCRIHNVTKLVSMLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPNDNFSIENGHVIPGLIHKCYKAKKDGTDFTIWGSGTPLRQFIYSGDLAELTVWVMRDYHSPDPITLSVDESAEVAIKDVAYAVAKAMKFEGKVVFDTSKADGQFKKTACNKKLRGLRPDYQFTSMEDGIQKSVDWFLENYETARK 324          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|1210521517|dbj|GAX19507.1| (GDP-L-fucose synthase [Fistulifera solaris])

HSP 1 Score: 474.552 bits (1220), Expect = 4.791e-162
Identity = 219/318 (68.87%), Postives = 261/318 (82.08%), Query Frame = 0
Query:  279 NNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            N K V+++TGG+GLVG GI+ FI +     E E +VFLSSKDGD+R +     IFEK++P +V+HLAA VGGLF NMA KVEF+REN+LINDNVME C+ +KV+KLVS LSTCIFPDKTTYPIDETM+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF+IQ GHVIPGL+HKCYLA+Q  T FTIWGSG PLRQF+YS DLAEL +W +REYH   P+ LSV EEDEVSI  +A  VAKAM+F+G ++FDTSKADGQ+KKTA N KLR   PD++FTSIEEG++++  WF ENY  ARK
Sbjct:    6 NEKNVIMVTGGSGLVGMGIKTFIENGN-QVEGEEWVFLSSKDGDMRKRDDCEKIFEKYKPTHVIHLAAKVGGLFANMAAKVEFFRENILINDNVMECCRIYKVKKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQSGHVIPGLIHKCYLAKQDNTPFTIWGSGTPLRQFVYSIDLAELTVWVLREYHDPTPITLSVDEEDEVSIKDVALAVAKAMKFEGEIIFDTSKADGQFKKTAGNKKLRKYLPDYKFTSIEEGIQQSVDWFVENYEVARK 322          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|1210531655|dbj|GAX09622.1| (GDP-L-fucose synthase [Fistulifera solaris])

HSP 1 Score: 473.781 bits (1218), Expect = 8.818e-162
Identity = 220/318 (69.18%), Postives = 260/318 (81.76%), Query Frame = 0
Query:  279 NNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            N K V+++TGG+GLVG GI+ FI +     E E +VFLSSKDGD+R +     IFEK++P +V+HLAA VGGLF NMA KVEF+REN+LINDNVME C+ + V+KLVS LSTCIFPDKTTYPIDETM+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF+IQ GHVIPGL+HKCYLA+Q  T FTIWGSG PLRQF+YS DLAEL +W +REYH   P+ LSV EEDEVSI  +A  VAKAM+F+G +VFDTSKADGQ+KKTA N KLR   PD++FTSIEEG++K+  WF ENY  ARK
Sbjct:    6 NEKNVIMVTGGSGLVGMGIKTFIENGN-QVEGEEWVFLSSKDGDMRKRDDCEKIFEKYKPTHVIHLAAKVGGLFANMAAKVEFFRENILINDNVMECCRIYNVKKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQSGHVIPGLIHKCYLAKQDQTPFTIWGSGTPLRQFVYSIDLAELTVWVLREYHDPTPITLSVDEEDEVSIKDVALAVAKAMKFEGEIVFDTSKADGQFKKTAGNKKLRKYLPDYKFTSIEEGIQKSVDWFVENYEVARK 322          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|219125537|ref|XP_002183034.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405309|gb|EEC45252.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 461.455 bits (1186), Expect = 4.669e-157
Identity = 210/312 (67.31%), Postives = 260/312 (83.33%), Query Frame = 0
Query:  285 LITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            ++TGG+GLVG  I +++     A E+ES+++L+SK+GDLR++A T  IF K++P +V+HLAA VGGLF NMAQKVEF+REN+LINDN+ME  + +KVEKLVS LSTCIFPDKTTYPIDETM+H+GPPH SNEGYAYAKR++D M+R Y EEYGCNFTSIIPTNIYGPHDNF+IQ+GHVIPGL+HKCYLA++  T FTIWGSG PLRQF+YSRDLAEL +W MREYH   P+ LSV EE+EVSI  +A  VAKAM+F G +VFDTSKADGQ+KKTA N KLRSL+ D+ FTS+ +G++++  WF  NY + RK
Sbjct:    1 MVTGGSGLVGAAIREYVEGTG-ALENESWIYLNSKEGDLRNRADTEKIFAKYQPTHVIHLAAKVGGLFANMAQKVEFFRENILINDNIMECSRIYKVEKLVSFLSTCIFPDKTTYPIDETMLHDGPPHPSNEGYAYAKRLIDTMNRAYAEEYGCNFTSIIPTNIYGPHDNFSIQNGHVIPGLIHKCYLAKKDNTPFTIWGSGTPLRQFVYSRDLAELTVWVMREYHDPTPITLSVDEEEEVSIKDVALAVAKAMQFDGQIVFDTSKADGQFKKTACNKKLRSLKADYEFTSMPDGIQQSVDWFVANYDSCRK 311          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|1072225452|gb|OEU10199.1| (putative GDP-fucose synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 459.144 bits (1180), Expect = 7.172e-156
Identity = 209/316 (66.14%), Postives = 258/316 (81.65%), Query Frame = 0
Query:  283 VVLITGGTGLVGKGIEDFISSDPIAQ--ESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            VV++TGG+GLVG+ I+++++ +        E+++FLSSKDGDLRD+  T A+FEK +P +V+HLAA VGGLF NMA+KVEFYREN+L+NDN+ME  + +KV+KLV  LSTCIFPDKTTYPIDETMIHNGPPH SNEGYAYAKRM+D M+R Y EEY CNFTSIIPTNIYG  DNF+I+ GHVIPGL+HKCY A+Q GT F IWGSG PLRQF+YSRDLAEL +W  REY+ ADP+ILSV E+DEV+I  +A  VAKA  F+G + FDTSK+DGQYKKTA N+KLR  RPD++FTS+ +G++K+  WF  NY T RK
Sbjct:   13 VVMVTGGSGLVGQAIKEYVTENDNENTLSGETWIFLSSKDGDLRDRKATEAVFEKFKPTHVIHLAAKVGGLFANMAEKVEFYRENILMNDNIMECSRIYKVQKLVGMLSTCIFPDKTTYPIDETMIHNGPPHHSNEGYAYAKRMIDTMNRAYNEEYNCNFTSIIPTNIYGKSDNFSIETGHVIPGLIHKCYKAKQDGTPFCIWGSGTPLRQFVYSRDLAELTVWVTREYNEADPIILSVDEDDEVTIKDVALAVAKAHNFEGKIEFDTSKSDGQYKKTACNMKLRKYRPDYKFTSMPDGIQKSVDWFVANYETCRK 328          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|6453565|emb|CAB61336.1| (GDP-4-keto-6-deoxy-D-mannose epimerase-reductase, partial [Laminaria digitata])

HSP 1 Score: 456.833 bits (1174), Expect = 2.639e-155
Identity = 205/306 (66.99%), Postives = 250/306 (81.70%), Query Frame = 0
Query:  291 GLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            GLVG GI++F+SSD  A+E E Y+FLSSKDGDLR   +T AIFEK++P +V+HLAA VGGLF N+  KVEF+REN+LINDNVME C+ +KVEKLVSCLSTCIFPDKTTYPIDETM+HNGPPH SNEGYAYAKRM+DV++RCYK+EYGCNFTS+IPTNIYG  DNF+I +GHV+PGL+HKCY A+QAG D  +WG+G PLRQFIY+ DL  L+IW MR YH  DP+ILSVG     SI   A+ +A +M+F+GNVVFDT K DGQ+KKTA    L+   PDF+FT +++GL++ C WF EN+ TARK
Sbjct:    1 GLVGSGIKEFVSSDAEAKEKEEYIFLSSKDGDLRSMDETKAIFEKYKPTHVIHLAARVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMIWAMRHYHEVDPIILSVGRRTRSSIAERAKMIASSMDFEGNVVFDTDKPDGQFKKTACQHLLKKKNPDFKFTPMKDGLKEACEWFCENFETARK 306          
BLAST of EWM25919.1 vs. NCBI_GenBank
Match: gi|675199391|ref|XP_008908580.1| (hypothetical protein PPTG_13882 [Phytophthora parasitica INRA-310] >gi|568015049|gb|ETL89226.1| hypothetical protein L917_11773 [Phytophthora parasitica] >gi|568091254|gb|ETN06078.1| hypothetical protein PPTG_13882 [Phytophthora parasitica INRA-310] >gi|570323249|gb|ETO71197.1| hypothetical protein F444_12380 [Phytophthora parasitica P1976] >gi|570979552|gb|ETP40473.1| hypothetical protein F442_12193 [Phytophthora parasitica P10297] >gi|970633393|gb|KUF79076.1| GDP-L-fucose synthase [Phytophthora nicotianae])

HSP 1 Score: 456.833 bits (1174), Expect = 5.090e-155
Identity = 201/322 (62.42%), Postives = 262/322 (81.37%), Query Frame = 0
Query:  275 DMSKNNKKVVLITGGTGLVGKGIEDFISSDPIAQESESYVFLSSKDGDLRDKAQTYAIFEKHRPAYVVHLAALVGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELIIWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
            D  K  + VVL+TGGTGLVG+ ++D ++S  +    + + F+ SKD DLRD  QT  +FE+ RP +V+HLAALVGGLF N+++KV+F+RENM IND+V++ C+ F V+KLVSCLSTC+FP +T YP+DETM+HNG  H+SNEGYA AKR++D ++RCY +++GCNFTS+IPTNIYGPHDNFN+ DGHV+PGL+HKCYLA++    F IWGSGKPLRQFIYS D+A L++WT+  Y S +PLILSV EEDEVS+G +A+ +A AM+FKG +VF+TSKADGQ+KKTASN KLR L PDF+FT I +GL++T AWF+ENY  ARK
Sbjct:    2 DDQKATRSVVLVTGGTGLVGRALQDVVAS--LGSPQDEWHFVGSKDADLRDPQQTRELFERVRPTHVLHLAALVGGLFHNLSRKVDFFRENMAINDSVLQCCQQFDVKKLVSCLSTCVFPAETAYPLDETMLHNGRAHSSNEGYAMAKRLVDTLNRCYADQFGCNFTSVIPTNIYGPHDNFNVDDGHVVPGLIHKCYLAKRDSMPFVIWGSGKPLRQFIYSHDVARLMLWTLDHYDSVEPLILSVDEEDEVSVGDVAQKIAAAMDFKGEIVFNTSKADGQFKKTASNAKLRRLLPDFQFTPISKGLQQTTAWFEENYENARK 321          
The following BLAST results are available for this feature:
BLAST of EWM25919.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107788|gb|EWM25919.1|0.000e+0100.00GDP-L-fucose synthetase [Nannochloropsis gaditana][more]
gi|298710483|emb|CBJ25547.1|2.587e-16770.19GDP-4-keto-6-deoxy-D-mannose epimerase-reductase [... [more]
gi|676388305|ref|XP_009037431.1|2.712e-16367.29hypothetical protein AURANDRAFT_53743 [Aureococcus... [more]
gi|224012849|ref|XP_002295077.1|2.870e-16367.18gdp-fucose synthetase [Thalassiosira pseudonana CC... [more]
gi|1210521517|dbj|GAX19507.1|4.791e-16268.87GDP-L-fucose synthase [Fistulifera solaris][more]
gi|1210531655|dbj|GAX09622.1|8.818e-16269.18GDP-L-fucose synthase [Fistulifera solaris][more]
gi|219125537|ref|XP_002183034.1|4.669e-15767.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072225452|gb|OEU10199.1|7.172e-15666.14putative GDP-fucose synthetase [Fragilariopsis cyl... [more]
gi|6453565|emb|CAB61336.1|2.639e-15566.99GDP-4-keto-6-deoxy-D-mannose epimerase-reductase, ... [more]
gi|675199391|ref|XP_008908580.1|5.090e-15562.42hypothetical protein PPTG_13882 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4793rna4793Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications