EWM25898.1, cds4777 (CDS) Nannochloropsis gaditana

Overview
NameEWM25898.1
Unique Namecds4777
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:360424..363657 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25898.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100048g28.10270.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:360424..363657 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
Homology
BLAST of EWM25898.1 vs. NCBI_GenBank
Match: gi|585107767|gb|EWM25898.1| (hypothetical protein Naga_100048g28 [Nannochloropsis gaditana])

HSP 1 Score: 2200.63 bits (5701), Expect = 0.000e+0
Identity = 1077/1077 (100.00%), Postives = 1077/1077 (100.00%), Query Frame = 0
Query:    1 MSVPNDEEIMPRADEPSTLTRSPPSQTSQAAHASLRPIQSQFSGATPVWRKQRSLLILGAWMAFAGLVILGLVLTISHNESRRQRLLERGSLPSRVMLGPPPSQDVPILGTHCCTTEYGLEASTMAAQATNSAAWSMGHGKHSRAPPSLEARLFREAVADADSTGAGGNQGLSGVVYLVVTPRRTEDALGQLLRRLHEHFLRLHRYPVVVYLASENLTQDSRDHLQATVPSSIVDFRPVPDLLEQHQALQAQGSSGTERKPAILRPEAAAYERALWDFQVSEAPRLLAQEFEWILHLSEDTLLSQDVLLDPFHALRMTDRRLGYMAAHRAVDEEGLWAFGRKFAEQHVLARKGKGEAALHLTWNVPKAIDARWIAYHKSVFTSELYRLMVVALAASPLTDTLPASTPSPTNAPKDASLSRLSQGRRPPLSLPSALFDAGDVLLDPSVAAIAAAVSSSSPTSPSSRIQSEVALDRYRKEGEAAPSPSMVSLRLPDPAAVLTLGSLVTLTQDEFMQYRGLNLERPPKRTDGLQGLSPEEAAGVTRSSWRGIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKYMWLFGDTLLGYANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSKGGCPVSIFVRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVWALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELSREDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKLERPAPKALNFVVVQENKSLGGTQTRIACGTGLEESHIAKPAA 1077
            MSVPNDEEIMPRADEPSTLTRSPPSQTSQAAHASLRPIQSQFSGATPVWRKQRSLLILGAWMAFAGLVILGLVLTISHNESRRQRLLERGSLPSRVMLGPPPSQDVPILGTHCCTTEYGLEASTMAAQATNSAAWSMGHGKHSRAPPSLEARLFREAVADADSTGAGGNQGLSGVVYLVVTPRRTEDALGQLLRRLHEHFLRLHRYPVVVYLASENLTQDSRDHLQATVPSSIVDFRPVPDLLEQHQALQAQGSSGTERKPAILRPEAAAYERALWDFQVSEAPRLLAQEFEWILHLSEDTLLSQDVLLDPFHALRMTDRRLGYMAAHRAVDEEGLWAFGRKFAEQHVLARKGKGEAALHLTWNVPKAIDARWIAYHKSVFTSELYRLMVVALAASPLTDTLPASTPSPTNAPKDASLSRLSQGRRPPLSLPSALFDAGDVLLDPSVAAIAAAVSSSSPTSPSSRIQSEVALDRYRKEGEAAPSPSMVSLRLPDPAAVLTLGSLVTLTQDEFMQYRGLNLERPPKRTDGLQGLSPEEAAGVTRSSWRGIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKYMWLFGDTLLGYANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSKGGCPVSIFVRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVWALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELSREDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKLERPAPKALNFVVVQENKSLGGTQTRIACGTGLEESHIAKPAA
Sbjct:    1 MSVPNDEEIMPRADEPSTLTRSPPSQTSQAAHASLRPIQSQFSGATPVWRKQRSLLILGAWMAFAGLVILGLVLTISHNESRRQRLLERGSLPSRVMLGPPPSQDVPILGTHCCTTEYGLEASTMAAQATNSAAWSMGHGKHSRAPPSLEARLFREAVADADSTGAGGNQGLSGVVYLVVTPRRTEDALGQLLRRLHEHFLRLHRYPVVVYLASENLTQDSRDHLQATVPSSIVDFRPVPDLLEQHQALQAQGSSGTERKPAILRPEAAAYERALWDFQVSEAPRLLAQEFEWILHLSEDTLLSQDVLLDPFHALRMTDRRLGYMAAHRAVDEEGLWAFGRKFAEQHVLARKGKGEAALHLTWNVPKAIDARWIAYHKSVFTSELYRLMVVALAASPLTDTLPASTPSPTNAPKDASLSRLSQGRRPPLSLPSALFDAGDVLLDPSVAAIAAAVSSSSPTSPSSRIQSEVALDRYRKEGEAAPSPSMVSLRLPDPAAVLTLGSLVTLTQDEFMQYRGLNLERPPKRTDGLQGLSPEEAAGVTRSSWRGIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKYMWLFGDTLLGYANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSKGGCPVSIFVRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVWALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELSREDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKLERPAPKALNFVVVQENKSLGGTQTRIACGTGLEESHIAKPAA 1077          
BLAST of EWM25898.1 vs. NCBI_GenBank
Match: gi|585101849|gb|EWM21594.1| (hypothetical protein Naga_100012g47 [Nannochloropsis gaditana])

HSP 1 Score: 236.884 bits (603), Expect = 6.112e-63
Identity = 173/557 (31.06%), Postives = 254/557 (45.60%), Query Frame = 0
Query:  545 SWRGIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKYMWLFGDTLLGYANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVS------------KGGCPVSIF------VRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAM---------MHGDKDAELATGPEDMIYLFGV---NNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVW----------------ALTKGSPDEKA----------------QATTDTDTRLTNTT--WAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELS-REDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKLE 1036
            +WRG  +  +EA +LQPL   R  G+ GADVA S   PP                                 GD G+      +WL GDT LG     RR+ G +F+HNSVA +PV N     A P     VVF   +S            K GCP S+F      VRG   ++EC    +YLWP+SG+ V                    D  +   +++A     S +++LA RWAY+      V++   +  NF +LGTT++VVD+ H  P +W YR RD PGT  ++NW+ A+           G K   LA    ++++L G    ++  A     +    + L R+PV+ L+D++   MEVW                  T     +KA                 A T  D   ++ +  W     ++     A  L+ PV++  S++YS  L  +Y V +DWL    +L  AE +T  W+   +Y +PPPFND  + M Y GKAHPEL+  E+E++ T++ N PG + PLFE GA  +YVPRF+R+  +
Sbjct:  144 TWRGRRLTVSEAVELQPLLDARPLGYNGADVAASLPAPP-------------------------------MAGDKGQPHT---LWLLGDTFLGRMEGRRRIPG-YFVHNSVATMPVWNHPSREADP---AQVVFWHGLSPPAPFAATAEEEKDGCPASLFRTPGERVRG--DENECHEGGEYLWPVSGLAV--------------------DLAAAPSNASASRSFASHLLLLATRWAYLPWIEEDVNM-TRSVLNFQVLGTTLVVVDDAHLEPPRWRYRTRDWPGTGPDVNWFQAIALAGEEEGGREGGKQGGLARSENELVFLMGTAPEDSAVAEKGGGKGSTRQILGRVPVKGLLDMTLEGMEVWGRGKAAPAKARAAAQVGATGAKAGDKAGLGRVFLPPAASGAIPSALTGNDGSRSDASEGWGTLSSYMDGSWVATSLLSPVYTGVSLQYSSFLRRWYSVAIDWLGKQALLQTAESITGPWDSTPIYDLPPPFNDSNL-MAYTGKAHPELADNENEIVFTYVANTPGVVYPLFEDGADILYVPRFVRIVFD 638          
BLAST of EWM25898.1 vs. NCBI_GenBank
Match: gi|585111791|gb|EWM29268.1| (glycolipid 2-alpha-mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 205.297 bits (521), Expect = 3.219e-50
Identity = 149/497 (29.98%), Postives = 227/497 (45.67%), Query Frame = 0
Query:  546 WRGIEIIATEAEDLQPLFSVRNAGWLGADVATSFRFPPRHPTGLRTSGVATSTSDATQGPGDGRTEGPKKEGDVGEAEHGKYMWLFGDTLLGYANEDRRLSGAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSKGGCPVSIFVRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAM-MHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVWALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAWEPVVVYKIPPPFNDPAVYMTYAGKAHPELSRED------ELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKL 1035
            WR  +I    A +L  L + R  G+LG+DVATSFR P                                       A HG YMWL GDT LG ++  +R      + N+VAF P         + L P DV F W     G P + F     Q    V     LWP+SG+ V Y                             +G  V K+++ A R    K+H  +  L   +  NF + GT+++V++NP A P +W Y   D+ GT+   NW+SA+ + G K  E+A  PED++YL G      +G    +     L R+ V  L+   F  MEV         E+A  + ++D +    + A     + R  K   ++ P  +ETS++Y+  LGA+  + VD +S+ +VL+ A  ++  W   V++ IP P++D ++Y  YAGK HPEL+RE       E + +++ NAP D   LF+ G   +Y P+F+R++L
Sbjct:  905 WRDRDISVEPAPELSGLLAPRRFGYLGSDVATSFRLP-------------------------------------SVAGHGSYMWLLGDTYLGTSDGLKRQGMHTTISNAVAFFPSGADLGAAGELLTPSDVTFFWGYDLDGSPTAPFEAEAGQAAGTV-----LWPVSGVSVEY-----------------------------QG--VVKIVLFAQR--VQKTHNLTDFLGVADGMNFEVEGTSLIVIENPAAAPNRWRYSVTDIAGTNGTHNWFSAVAVAGGK--EIADSPEDVLYLVGNVGARGLGVYDDEASKNVLGRIKVTDLLKRRFDRMEVLV-------EEAHESRESDGKELWMSTAEAEASVARRRKG--IISPANAETSLQYNSELGAWVSLAVDSVSAQLVLWSARSVSGPWTSAVIHSIPAPYDDLSLYRCYAGKGHPELAREGLPGGDVEFVFSYVCNAPSDSGILFDEGQLTLYAPQFIRVRL 1315          
BLAST of EWM25898.1 vs. NCBI_GenBank
Match: gi|676386611|ref|XP_009036584.1| (hypothetical protein AURANDRAFT_63946 [Aureococcus anophagefferens] >gi|323452708|gb|EGB08581.1| hypothetical protein AURANDRAFT_63946 [Aureococcus anophagefferens])

HSP 1 Score: 63.929 bits (154), Expect = 7.937e-7
Identity = 109/433 (25.17%), Postives = 159/433 (36.72%), Query Frame = 0
Query:  617 GDVGEA---EHGKYMWLFGDTLLGYANEDRRLS-GAFFLHNSVAFLPVINVSDPRAKPLGPEDVVFAWNVSKGGCPVSIFVRGPPQDDECVHTQDYLWPISGIGVSYLEPRAEKKGNVNGKRGRGDSGSEFDSSTAEGDVVSKVIVLAVRWAYVKSHTASVDLFDDNAFNFNILGTTVLVVDNPHAHPTQWEYRQRDLPGTDANLNWYSAMMHGDKDAELATGPEDMIYLFGVNNTEAVGTPPQQWQYETLSRLPVRSLVDLSFRDMEVW--ALTKGSPDEKAQATTDTDTRLTNTTWAPYPLFLHRHLKAAPLVFPVFSETSVRYSHSLGAYYGVVVDWLSSNVVLYLAEDLTEAW-EPVVVYKIPPPFNDPAVYMTYAGKAHPELS-------REDELILTFMTNAPGDLEPLFETGAKDVYVPRFLRLKL 1035
            GDVG +      + +W+FGDTL+G+ +  RR+S GA   H+SV       V D  A P   + + + W              GP                     S+  P  E               + + + TA   V  +V+VL  R  Y       +    + +F F I G      D P   P  WE     LP T  NL+  +          L  GP   +YL+G   T A G        E LSR+P   L + +F   E W  A  +G  D+  +A                          A L  P  +E   ++    G+Y  + + + S+ V L  A      W +P  VY IPPP ND   +  YA   H   S          +L+ T++ N    L  +F  GA+  Y+P+F+RL  
Sbjct:   57 GDVGASCALTPTRTLWVFGDTLIGHWDGKRRVSEGAAMPHSSV------GVWDLGAAPR--DAMTWRW--------------GPGN------------------ASFFRPSWESSKE-----------AFWAAVTAPRLVDGRVLVLGNRVLYT-GEGGPMGFRTNESFIFTIDG----AADRPD-DPASWELDYFSLPHT-GNLS--TGGFVDFARGALLVGP--WLYLYGNVRTAATG------GREVLSRIPWADLRERNFSAQEYWTGAWRRGWGDDLPEAL-------------------------ATLWSPQVAEMQPQWCDKTGSYVALTIPFGSTRVELRAAPAPEGPWTDPRKVYDIPPPQNDTTKFFCYATMQHDVASLPRDPSSPPPDLVFTYVCNGR-TLADVFAPGAEASYIPQFVRLSF 395          
The following BLAST results are available for this feature:
BLAST of EWM25898.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107767|gb|EWM25898.1|0.000e+0100.00hypothetical protein Naga_100048g28 [Nannochlorops... [more]
gi|585101849|gb|EWM21594.1|6.112e-6331.06hypothetical protein Naga_100012g47 [Nannochlorops... [more]
gi|585111791|gb|EWM29268.1|3.219e-5029.98glycolipid 2-alpha-mannosyltransferase [Nannochlor... [more]
gi|676386611|ref|XP_009036584.1|7.937e-725.17hypothetical protein AURANDRAFT_63946 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4789rna4789Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications