EWM25893.1, cds4758 (CDS) Nannochloropsis gaditana

Overview
NameEWM25893.1
Unique Namecds4758
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:305106..307586 +
Alignment locationCM002464.1:307719..309068 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25893.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100048g6.10265.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:305106..307586 +
CM002464.1supercontigCM002464.1:307719..309068 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of EWM25893.1 vs. NCBI_GenBank
Match: gi|585107762|gb|EWM25893.1| (hypothetical protein Naga_100048g6 [Nannochloropsis gaditana])

HSP 1 Score: 2613.56 bits (6773), Expect = 0.000e+0
Identity = 1276/1276 (100.00%), Postives = 1276/1276 (100.00%), Query Frame = 0
Query:    1 MSEPQPSDPYLQEQHDRNMSPDQGTGKWTKGEAEDVHCDTSAAMAKLNSAPTRPHKAFNPTTKKLPCPHHKDVIVCRHKLRTGVTTIPCWRCMGEAAVRAEERETTAEIRAQYLHIALQSEKGRTAMLERRATLLEEEQVGLRDQIARLIEQVAALSEEVNRVNGMNRRLMTQFRPNKSTPLKDCLKSGHSVHKTLSEVSAPDLASPSTAPTTATSATAPTTATSATAPIADPGETTTQPPEQAHSTCTSSTPLSGSPGKDVTLSAPGGEAGPPLSLSCRPPPPRNQEPSHVSSAWSASPPTPSESVAARPLPASPTASASRALSATAGSQGAAWRARAATDPEVAPIRVATGPHKITSMTAGTHSQAPTESAAGGGSGSMPPSRPSLPAWLQGKRQAEAGPRAQGGEQNERQKSRTPQEGGRPKDGKKKRVWTLFKRGKRASSIPAAAAAASGGVRAPTTMDELDEALPVDRMAKRMLRLLESRPEALEKIYRKSEQLEEWRMEVLLELGVGEETGGREDGGSLQEGEEDKEKKAEGEGRTSPVQGLDHSASRIFLDEIALVEALTDRIKQCVLRHVADAFTLARASPSLLHQAVNVVRLHAAFGKKKLETAQAKIARTGSKDLYRVLRLCGIEDWDGDVRLALKEAASVRALEVFTVAHLEAAAAMEEGGQTSVMGVSREKAMIGAAESLLEDMREMLVLVPPFFAPAHRAVSTILEEYDTHLMRQVAALHGHGLSDLEIGDLFEVNRFLLRYRRDIVVLGASAPNANLQMAVQACLQECLVKTRHQTSVWFTAILGRQGEVLYDAQGRPFTAKPEDLFQIIHTQVRVAIDAGGFTGDDLCALLLVILNALKEFVAEHHNDLRAHEYEAQGRGKGGGGAIPLSVSGLCALVNDYDRLYDKAVELRDNLLGRGELSEKKHFVLLDNVMDQLNDEQARVSFEATRLVSYQIMQEATVSLLEISPFDTEGRAPVRKLPTGVSDGGGMPVWVGTGDRSGLGNRRNRGANPSGERPQGSDKDAQNDGNSTHMFSMPYATTLLDRTTERKTSASPRHVDVMKEACLTIMDYFADIQVWLPAYFFAHVVRMCYESLVDLYLVSVLRGRTVFVDPESVAHRMRQEQQKLLLDLARKNGWESSLREAGLKDPALVFGAWEAMERVVLRGGGMNEKETADLLMVLPPPWNVDALLQLRLLRGEDLGDRKAIHETRQRLTAWYMAELQPQVLGAALAGSGQSARKEGEADAATVGRELAWRLKTSPLAVDEDRLVELVRESVYNQ 1276
            MSEPQPSDPYLQEQHDRNMSPDQGTGKWTKGEAEDVHCDTSAAMAKLNSAPTRPHKAFNPTTKKLPCPHHKDVIVCRHKLRTGVTTIPCWRCMGEAAVRAEERETTAEIRAQYLHIALQSEKGRTAMLERRATLLEEEQVGLRDQIARLIEQVAALSEEVNRVNGMNRRLMTQFRPNKSTPLKDCLKSGHSVHKTLSEVSAPDLASPSTAPTTATSATAPTTATSATAPIADPGETTTQPPEQAHSTCTSSTPLSGSPGKDVTLSAPGGEAGPPLSLSCRPPPPRNQEPSHVSSAWSASPPTPSESVAARPLPASPTASASRALSATAGSQGAAWRARAATDPEVAPIRVATGPHKITSMTAGTHSQAPTESAAGGGSGSMPPSRPSLPAWLQGKRQAEAGPRAQGGEQNERQKSRTPQEGGRPKDGKKKRVWTLFKRGKRASSIPAAAAAASGGVRAPTTMDELDEALPVDRMAKRMLRLLESRPEALEKIYRKSEQLEEWRMEVLLELGVGEETGGREDGGSLQEGEEDKEKKAEGEGRTSPVQGLDHSASRIFLDEIALVEALTDRIKQCVLRHVADAFTLARASPSLLHQAVNVVRLHAAFGKKKLETAQAKIARTGSKDLYRVLRLCGIEDWDGDVRLALKEAASVRALEVFTVAHLEAAAAMEEGGQTSVMGVSREKAMIGAAESLLEDMREMLVLVPPFFAPAHRAVSTILEEYDTHLMRQVAALHGHGLSDLEIGDLFEVNRFLLRYRRDIVVLGASAPNANLQMAVQACLQECLVKTRHQTSVWFTAILGRQGEVLYDAQGRPFTAKPEDLFQIIHTQVRVAIDAGGFTGDDLCALLLVILNALKEFVAEHHNDLRAHEYEAQGRGKGGGGAIPLSVSGLCALVNDYDRLYDKAVELRDNLLGRGELSEKKHFVLLDNVMDQLNDEQARVSFEATRLVSYQIMQEATVSLLEISPFDTEGRAPVRKLPTGVSDGGGMPVWVGTGDRSGLGNRRNRGANPSGERPQGSDKDAQNDGNSTHMFSMPYATTLLDRTTERKTSASPRHVDVMKEACLTIMDYFADIQVWLPAYFFAHVVRMCYESLVDLYLVSVLRGRTVFVDPESVAHRMRQEQQKLLLDLARKNGWESSLREAGLKDPALVFGAWEAMERVVLRGGGMNEKETADLLMVLPPPWNVDALLQLRLLRGEDLGDRKAIHETRQRLTAWYMAELQPQVLGAALAGSGQSARKEGEADAATVGRELAWRLKTSPLAVDEDRLVELVRESVYNQ
Sbjct:    1 MSEPQPSDPYLQEQHDRNMSPDQGTGKWTKGEAEDVHCDTSAAMAKLNSAPTRPHKAFNPTTKKLPCPHHKDVIVCRHKLRTGVTTIPCWRCMGEAAVRAEERETTAEIRAQYLHIALQSEKGRTAMLERRATLLEEEQVGLRDQIARLIEQVAALSEEVNRVNGMNRRLMTQFRPNKSTPLKDCLKSGHSVHKTLSEVSAPDLASPSTAPTTATSATAPTTATSATAPIADPGETTTQPPEQAHSTCTSSTPLSGSPGKDVTLSAPGGEAGPPLSLSCRPPPPRNQEPSHVSSAWSASPPTPSESVAARPLPASPTASASRALSATAGSQGAAWRARAATDPEVAPIRVATGPHKITSMTAGTHSQAPTESAAGGGSGSMPPSRPSLPAWLQGKRQAEAGPRAQGGEQNERQKSRTPQEGGRPKDGKKKRVWTLFKRGKRASSIPAAAAAASGGVRAPTTMDELDEALPVDRMAKRMLRLLESRPEALEKIYRKSEQLEEWRMEVLLELGVGEETGGREDGGSLQEGEEDKEKKAEGEGRTSPVQGLDHSASRIFLDEIALVEALTDRIKQCVLRHVADAFTLARASPSLLHQAVNVVRLHAAFGKKKLETAQAKIARTGSKDLYRVLRLCGIEDWDGDVRLALKEAASVRALEVFTVAHLEAAAAMEEGGQTSVMGVSREKAMIGAAESLLEDMREMLVLVPPFFAPAHRAVSTILEEYDTHLMRQVAALHGHGLSDLEIGDLFEVNRFLLRYRRDIVVLGASAPNANLQMAVQACLQECLVKTRHQTSVWFTAILGRQGEVLYDAQGRPFTAKPEDLFQIIHTQVRVAIDAGGFTGDDLCALLLVILNALKEFVAEHHNDLRAHEYEAQGRGKGGGGAIPLSVSGLCALVNDYDRLYDKAVELRDNLLGRGELSEKKHFVLLDNVMDQLNDEQARVSFEATRLVSYQIMQEATVSLLEISPFDTEGRAPVRKLPTGVSDGGGMPVWVGTGDRSGLGNRRNRGANPSGERPQGSDKDAQNDGNSTHMFSMPYATTLLDRTTERKTSASPRHVDVMKEACLTIMDYFADIQVWLPAYFFAHVVRMCYESLVDLYLVSVLRGRTVFVDPESVAHRMRQEQQKLLLDLARKNGWESSLREAGLKDPALVFGAWEAMERVVLRGGGMNEKETADLLMVLPPPWNVDALLQLRLLRGEDLGDRKAIHETRQRLTAWYMAELQPQVLGAALAGSGQSARKEGEADAATVGRELAWRLKTSPLAVDEDRLVELVRESVYNQ 1276          
BLAST of EWM25893.1 vs. NCBI_GenBank
Match: gi|585106604|gb|EWM24972.1| (Exocyst complex component Sec6 [Nannochloropsis gaditana])

HSP 1 Score: 213.772 bits (543), Expect = 2.074e-53
Identity = 151/474 (31.86%), Postives = 242/474 (51.05%), Query Frame = 0
Query:  481 LLESRPEALEKIYRKSEQLEEWRMEVLLELGVGEETGGREDGGSLQEGEEDKEKKAEGEGRTSPVQGLDHSASRIFLDEIALVEALTDRIKQCVLRHVADAFTLARASPSLLHQAVNVVRLHAAFGKKKLETAQAKIARTGSKDLYRVLRLCGIEDWDGDVRLALKEAASVRALEVFTVAHLEAAA---AMEEGGQTSVMGVSREKAMIGAAESLLEDMREMLVLVPPFFAPAHRAVSTILEEYDTHLMRQVAALHGHGLSDLEIGDLFEVNRFLLRYRRDIVVLGASAPNANLQMAVQACLQECLVKTRHQTSVWFTAILGRQGEVLYDAQGRPFTAKPEDLFQIIHTQVRVAIDAGGFTGDDLCALLLVILNALKEFVAEHHNDLRAHEYE-------AQGRGKGGGGAIPLSVSGLCALVNDYDRLYDKAVELRDNLLGRGELSEKKHFVLLDNVMDQLNDEQARVSFEAT 944
            LLE +P  L +++ + +QLE WR E+L EL V +        GS        +    G  R   V     +   I L+E   V+ L D I++ +  ++++ F + +  P +L   + +V +HAAF K+K   A+ + A   S+D+   + L  +ED   D+   LK+    RA  +F     EA A   ++   G  S +      A +GAA  +L D+  +   V P F   +  + T   +Y+  L++++  L+  G S L+ G+L ++  +L  Y + IV LGA  P +    A+  CLQE LV+ R Q + WFT IL R  EV  ++ G+P T+ PED F IIH QV VA+     + D++CA+++V LN +K  + E    LR  + E       A+ R + G    P+++  +CA VNDYDRL +K  E R+ L   G+LSE +H V++D  +D + D    ++ EA 
Sbjct:  177 LLEKQPMQLRQVHLEGQQLELWRDELLRELKVQQ--------GSKTMAPPPSKSGIGGPSRVVSVGDRMQATFGIHLEE---VKKLLDAIRKKIFDNISNCFEIVQLDPRILTSTLEIVDMHAAFQKQKATRARER-AEKNSEDVEEAVALSLLEDLRADLMSKLKQRVDDRASVMFAQTQAEAIAKEASVTTAGDASHVQPDVFAATLGAATRILVDLNYLKAEVAPCFPDDYMVMDTFRMQYERCLVKEICKLYQGGFSKLDQGELLQLMEWLDYYNQAIVHLGARTPCSEFVQALSICLQEYLVRVRIQMTEWFTNILNRVQEVAVNSAGQPITSTPEDFFNIIHLQVLVAL--SKLSADNMCAVIVVCLNVIKTILEETLTTLRDKKLELAFPPTMAKERQREGD---PVTLEMMCATVNDYDRLQEKIQEFREELGLMGKLSE-EHLVMVDAAVDHVLDGFVSIADEAN 632          

HSP 2 Score: 91.6633 bits (226), Expect = 5.390e-15
Identity = 68/227 (29.96%), Postives = 112/227 (49.34%), Query Frame = 0
Query: 1054 VDVM-KEACLTIMDYFADIQVWLPAYFFAHVVRMCYESLVDLYLVSVLR-----GRTV--------FVDPESVAHRMRQEQQKLLLDLARKNGWESSLREAGLKDPALVFGAWEAMERVV--LRGGGMNEKETADLLMVLPPPWNVDALLQLRLLRGEDLGDRKAIHETRQRLTAWYMAELQPQVLGAALAGSGQSARKEGEAD-AATVGRELAWRLKTSPLAVDED 1263
            VDVM ++  +T  DY++D+ VWLP ++FA +V+ C E ++ LYL  + R     G+          F DP  VA ++R +++ + +     + +E  LR AGL++PA +      ++ +V    GG   E +  D L+    PW VDALL +  LRG+   D+  + + ++RL       ++P + GA     GQ+       D AA   R  + R   SP   + D
Sbjct:  660 VDVMMQKVAMTFHDYYSDLSVWLPPFYFARLVKECLEKVMALYLFFLFRRGGAKGKDEKAVVKSRPFADPLVVAQKLRNDREAMAIFF---DDYEEQLRIAGLREPAALELQLAVLDHIVDLFEGGVTLETDATDALLREFGPWGVDALLAISFLRGD--KDKTGL-DLKERLKRHCARTIRPTLRGAG----GQAGLSNFTYDGAAEAPRNFSARFSLSPFDSEVD 876          
The following BLAST results are available for this feature:
BLAST of EWM25893.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107762|gb|EWM25893.1|0.000e+0100.00hypothetical protein Naga_100048g6 [Nannochloropsi... [more]
gi|585106604|gb|EWM24972.1|2.074e-5331.86Exocyst complex component Sec6 [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4770rna4770Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications