EWM25906.1, cds4757 (CDS) Nannochloropsis gaditana

Overview
NameEWM25906.1
Unique Namecds4757
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:301147..302450 -
Alignment locationCM002464.1:300125..300471 -
Alignment locationCM002464.1:299587..299946 -
Alignment locationCM002464.1:299055..299533 -

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Properties
Property NameValue
Protein idEWM25906.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100048g5.10278.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:301147..302450 -
CM002464.1supercontigCM002464.1:300125..300471 -
CM002464.1supercontigCM002464.1:299587..299946 -
CM002464.1supercontigCM002464.1:299055..299533 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM25906.1 vs. NCBI_GenBank
Match: gi|585107775|gb|EWM25906.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1668.29 bits (4319), Expect = 0.000e+0
Identity = 829/829 (100.00%), Postives = 829/829 (100.00%), Query Frame = 0 
Query:    1 MDVVEADTMVPVQSDHQQREEIGNASAGGSFETTAGNNSSHAQDSTDQTSLVGMEEEGAASDGVKTTPIVNKTRKGLSNKAGMSSEGSCRDGSNLQEDWVVDEGEKSQYSDVEEKENGSADQNKVGLEKAVEGGDLKMREKYAGGKRTKRGGPGSEDDGSLAPGRTTAVREARNSCSPPLSPAASASCSNYPSDAGSRSDHRSSGHGGGDDENVIPADRVEDDRGRRNAHENSGPGGRVARREERREDPADVVEELTGALDKLLEIEETMTLHRGYAPDNLQKNIGISPRLWDEIYEKARIIPSRGNRLYRSRVRRLVTYLERRLNLPTRLLPYPEEQRREMQEYARGRSSSPARRPSRGQGPRDAGDRRDFERRLPSMDRQARGRPGQEENSRHRVDPLPPRKPAGVDAGASRVAKQMECEEVTPFVAIRNLSRDLAFSDLLRLLQSHAPTYKIQAADLLLRPSGGNGRREGFVAYLSMANVTLAERLREGVRGIVFEGQRLSTGYTLGVPCADVYVDGVEEMEEEEVAALMQRWGQVVRVTGVKGTPKERHRTSAFVTFANVQEATEAVKAINDSKGAVKITRNSFRSMKATFRPFKGRSFANAPDPEGTRRGREAPPARYERPARPLGQERRGPDAEKKAFDGRRSAFPPHASDMPSRGPFRHGREPASQGRPRAVYSSVRRTRDPSPSQDSYSHSEAPRYPPSRSPSPFLEGRPRGRPASGHGRDPPRGLPRHSGRYSRSVSPEAGPGQGAGRGGRRPLHPQDAKYRQQGREGADRGFVDRPQKRRRNQDERHVPYDTPSYPRDDRNVRRGNVEGGPGKFQRRYH 829
            MDVVEADTMVPVQSDHQQREEIGNASAGGSFETTAGNNSSHAQDSTDQTSLVGMEEEGAASDGVKTTPIVNKTRKGLSNKAGMSSEGSCRDGSNLQEDWVVDEGEKSQYSDVEEKENGSADQNKVGLEKAVEGGDLKMREKYAGGKRTKRGGPGSEDDGSLAPGRTTAVREARNSCSPPLSPAASASCSNYPSDAGSRSDHRSSGHGGGDDENVIPADRVEDDRGRRNAHENSGPGGRVARREERREDPADVVEELTGALDKLLEIEETMTLHRGYAPDNLQKNIGISPRLWDEIYEKARIIPSRGNRLYRSRVRRLVTYLERRLNLPTRLLPYPEEQRREMQEYARGRSSSPARRPSRGQGPRDAGDRRDFERRLPSMDRQARGRPGQEENSRHRVDPLPPRKPAGVDAGASRVAKQMECEEVTPFVAIRNLSRDLAFSDLLRLLQSHAPTYKIQAADLLLRPSGGNGRREGFVAYLSMANVTLAERLREGVRGIVFEGQRLSTGYTLGVPCADVYVDGVEEMEEEEVAALMQRWGQVVRVTGVKGTPKERHRTSAFVTFANVQEATEAVKAINDSKGAVKITRNSFRSMKATFRPFKGRSFANAPDPEGTRRGREAPPARYERPARPLGQERRGPDAEKKAFDGRRSAFPPHASDMPSRGPFRHGREPASQGRPRAVYSSVRRTRDPSPSQDSYSHSEAPRYPPSRSPSPFLEGRPRGRPASGHGRDPPRGLPRHSGRYSRSVSPEAGPGQGAGRGGRRPLHPQDAKYRQQGREGADRGFVDRPQKRRRNQDERHVPYDTPSYPRDDRNVRRGNVEGGPGKFQRRYH
Sbjct:    1 MDVVEADTMVPVQSDHQQREEIGNASAGGSFETTAGNNSSHAQDSTDQTSLVGMEEEGAASDGVKTTPIVNKTRKGLSNKAGMSSEGSCRDGSNLQEDWVVDEGEKSQYSDVEEKENGSADQNKVGLEKAVEGGDLKMREKYAGGKRTKRGGPGSEDDGSLAPGRTTAVREARNSCSPPLSPAASASCSNYPSDAGSRSDHRSSGHGGGDDENVIPADRVEDDRGRRNAHENSGPGGRVARREERREDPADVVEELTGALDKLLEIEETMTLHRGYAPDNLQKNIGISPRLWDEIYEKARIIPSRGNRLYRSRVRRLVTYLERRLNLPTRLLPYPEEQRREMQEYARGRSSSPARRPSRGQGPRDAGDRRDFERRLPSMDRQARGRPGQEENSRHRVDPLPPRKPAGVDAGASRVAKQMECEEVTPFVAIRNLSRDLAFSDLLRLLQSHAPTYKIQAADLLLRPSGGNGRREGFVAYLSMANVTLAERLREGVRGIVFEGQRLSTGYTLGVPCADVYVDGVEEMEEEEVAALMQRWGQVVRVTGVKGTPKERHRTSAFVTFANVQEATEAVKAINDSKGAVKITRNSFRSMKATFRPFKGRSFANAPDPEGTRRGREAPPARYERPARPLGQERRGPDAEKKAFDGRRSAFPPHASDMPSRGPFRHGREPASQGRPRAVYSSVRRTRDPSPSQDSYSHSEAPRYPPSRSPSPFLEGRPRGRPASGHGRDPPRGLPRHSGRYSRSVSPEAGPGQGAGRGGRRPLHPQDAKYRQQGREGADRGFVDRPQKRRRNQDERHVPYDTPSYPRDDRNVRRGNVEGGPGKFQRRYH 829
The following BLAST results are available for this feature:
BLAST of EWM25906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107775|gb|EWM25906.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4769rna4769Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications