EWM25896.1, cds4756 (CDS) Nannochloropsis gaditana

Overview
NameEWM25896.1
Unique Namecds4756
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:295883..297331 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25896.1
Productzip transporter
Orig transcript idgnl|cribi|Naga_100048g4.10268.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:295883..297331 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0046873metal ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Homology
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|585107765|gb|EWM25896.1| (zip transporter [Nannochloropsis gaditana])

HSP 1 Score: 975.311 bits (2520), Expect = 0.000e+0
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0
Query:    1 MADLDESAFGQDSGETLPLRIASVFVIMVVSALGCMFPLLVLDLDGRAKFGGNLPLTPSSRNKTDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETLEELVDFPLAFFVAMMGSIVVLALSQVVDGVVSSMGRKSRPPGPSSTGGVDMVSMGRDPSLNMSKVVISAPDTSPSARAPSIHLEEAAAQEGLTASQKQFLQAARQGADGASGNEHQHAPITPVGAALTGRKKPTDLQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            MADLDESAFGQDSGETLPLRIASVFVIMVVSALGCMFPLLVLDLDGRAKFGGNLPLTPSSRNKTDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETLEELVDFPLAFFVAMMGSIVVLALSQVVDGVVSSMGRKSRPPGPSSTGGVDMVSMGRDPSLNMSKVVISAPDTSPSARAPSIHLEEAAAQEGLTASQKQFLQAARQGADGASGNEHQHAPITPVGAALTGRKKPTDLQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA
Sbjct:    1 MADLDESAFGQDSGETLPLRIASVFVIMVVSALGCMFPLLVLDLDGRAKFGGNLPLTPSSRNKTDGERVFHGAHAMHLLKSFSAGIILCVGFVHVLAEANETLEELVDFPLAFFVAMMGSIVVLALSQVVDGVVSSMGRKSRPPGPSSTGGVDMVSMGRDPSLNMSKVVISAPDTSPSARAPSIHLEEAAAQEGLTASQKQFLQAARQGADGASGNEHQHAPITPVGAALTGRKKPTDLQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|553195942|ref|XP_005856235.1| (zip transporter, partial [Nannochloropsis gaditana CCMP526] >gi|422292820|gb|EKU20122.1| zip transporter, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 489.189 bits (1258), Expect = 8.343e-171
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0
Query:  243 PPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            PPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIG+GISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA
Sbjct:    1 PPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAVQKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGMGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 240          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1117459333|ref|XP_019424707.1| (PREDICTED: zinc transporter 1-like [Lupinus angustifolius] >gi|1102692960|gb|OIV92520.1| hypothetical protein TanjilG_02283 [Lupinus angustifolius])

HSP 1 Score: 155.992 bits (393), Expect = 1.332e-39
Identity = 101/267 (37.83%), Postives = 144/267 (53.93%), Query Frame = 0
Query:  239 LQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAV---QKQPSFGSDGHNHSFHEGGGHNDAVHVVQAFKNHSL--------------------VIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            + I+P    S+ SP +        +P+ + PF    A  S    L   SLA    Q+Q    S         G GH D +H+      H+                     +I+ ++E+GIV HSV+IGI LGTA SSI+  + L+VA+S HQFFEG GL  CI +A+       IM   FS+TT +GI IG+GIS +Y E S+ A +VEG+FN+ +AGILIY+ALVD+L  +F    ++ +   Q+   + +LLGAG MS++A WA
Sbjct:   94 IHILPESFQSLTSPCL------KENPWGKFPFTGFVAMVSSIVTLMIDSLATGYYQRQHFNTSKQFPTDEEIGDGHVDHIHL----HTHATHGHSHGSSNSSEASELIRKRIISQVLEIGIVVHSVIIGISLGTA-SSIDTIKPLMVALSFHQFFEGLGLGGCISQAKFESRSTTIMATFFSLTTPIGIAIGMGISSVYKENSQTALIVEGVFNSSSAGILIYMALVDLLAADFMSPTLQNNLKLQLGANISLLLGAGCMSLLAKWA 349          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1098848836|ref|XP_018831282.1| (PREDICTED: LOW QUALITY PROTEIN: zinc transporter 4-like, partial [Juglans regia])

HSP 1 Score: 151.754 bits (382), Expect = 2.885e-39
Identity = 83/157 (52.87%), Postives = 110/157 (70.06%), Query Frame = 0
Query:  327 VIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLG-IVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            +IA ++E+GIVFHSV+IG+ +G A+ S+   R LLVA+S HQ FEG GL  CI +A+      AIM   FS+TT +G I IGIGIS  Y+  S+ A +VEGIFNA AAGILIY+ALVD+L  +F    V+Q+   QI + + +LLGAG MS++A WA
Sbjct:   83 IIAQVLELGIVFHSVIIGVDMG-ASQSVGTIRPLLVALSFHQIFEGIGLGGCISQAKFKSRSVAIMATFFSVTTPVGRIAIGIGISSTYNGNSQTALIVEGIFNALAAGILIYMALVDLLAADFMNPRVKQNVRIQIGVNVSLLLGAGCMSLLAKWA 238          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1117518114|ref|XP_019443701.1| (PREDICTED: zinc transporter 1-like [Lupinus angustifolius] >gi|1102712935|gb|OIW11694.1| hypothetical protein TanjilG_12213 [Lupinus angustifolius])

HSP 1 Score: 154.836 bits (390), Expect = 4.008e-39
Identity = 104/266 (39.10%), Postives = 145/266 (54.51%), Query Frame = 0
Query:  239 LQIVPPPPPSMRSPGVAPAGEAPSSPFAQLPFVSPRAQASLKTMLSARSLAV---QKQ-----PSFGSD--------GHNHSF------HEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            + I+P    S+ SP +        +P+ + PF    A  S    L   SLA    Q+Q       F  D        GH H        H  G  N +   + +      +I+ ++E+GIV HSV+IGI LGTATS I+  + LLVA+S HQFFEG GL  CI +A+      AIM   FS+TT +GI IG+GIS +Y E S  A +VEG+FN+ +AGILIY+ALVD+L  +F    ++ +   Q+   + +LLGAG MS++A WA
Sbjct:  101 IHILPEAFESLTSPCL------KENPWGKFPFTGFVAMLSSIVTLMVDSLATGYYQRQHFKNSKQFPIDEEIGEEHVGHMHVHTHATHGHSHGSVNSSEDSISSELIRKRIISQVLEIGIVVHSVIIGISLGTATS-IDTIKPLLVALSFHQFFEGLGLGGCISQAKFESRSTAIMGTFFSLTTPIGIAIGMGISSVYKENSPTALIVEGVFNSSSAGILIYMALVDLLAADFMSPTLQNNLKLQLGANISLLLGAGCMSLLAKWA 359          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1012105045|ref|XP_015958434.1| (zinc transporter 5 isoform X1 [Arachis duranensis])

HSP 1 Score: 153.68 bits (387), Expect = 9.877e-39
Identity = 86/185 (46.49%), Postives = 122/185 (65.95%), Query Frame = 0
Query:  299 DGHNHSFH-EGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            D H H  H    GH  +    + F++   VI+ ++E+GIV HSV+IGI LG + +S    R L+ A++ HQFFEG GL +CI +A+  R+   +M   FS+TT +GI IGIGIS +YD+ S  A +VEGIFNA +AGILIY+ALVD+L  +F   +++++   QI   + +LLGAG MS+IA WA
Sbjct:  177 DLHTHVTHGHAHGHVSSNKSSELFRHR--VISQVLELGIVVHSVVIGITLGASMNS-ETIRPLVAALTFHQFFEGMGLGSCITQAKFKRLSVIVMGLFFSLTTPVGIAIGIGISNVYDDNSPTALIVEGIFNAASAGILIYMALVDLLAADFMNPKMQKNSKLQIGANISLLLGAGFMSLIAKWA 358          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1021041142|gb|KZM98923.1| (hypothetical protein DCAR_013715 [Daucus carota subsp. sativus])

HSP 1 Score: 148.288 bits (373), Expect = 1.592e-38
Identity = 74/156 (47.44%), Postives = 111/156 (71.15%), Query Frame = 0
Query:  327 VIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            +I+ ++E+GI+ HS++IG+ LG A+ S +  +TLL A+S HQFFEG GL  CI +A+   + + IM   FS+TT +GI IGIGIS +Y E +  A +V+GIFN+ +AGILIY+ALVD+L  +F  + ++ +   Q+   + +LLGA +MSV+AIWA
Sbjct:   44 IISQVLELGIIVHSIIIGVTLG-ASESPDTIKTLLAALSFHQFFEGLGLGGCISQAKFKSLHSTIMTVFFSLTTPMGIAIGIGISNVYSENTPTALIVQGIFNSASAGILIYMALVDLLAADFMDQRMQSNARLQVAANISLLLGAASMSVLAIWA 198          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|568855573|ref|XP_006481378.1| (PREDICTED: zinc transporter 8-like [Citrus sinensis])

HSP 1 Score: 152.525 bits (384), Expect = 2.799e-38
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 0
Query:  298 SDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            +DGH H F E  G ++ +        H  VI+ ++E+GI+ HSV+IGI LG A+ S    + L+ A++ HQFFEG GL  CI +AR      AI+   FS+TT +GI IGIGIS +YDE S  A +VEGIFNA AAGILIY++LVD+L  +F   +++ +K  Q    + +LLGAG MS++A WA
Sbjct:  180 TDGHAHGFLEYSGESELL-------RHR-VISLVLELGILVHSVIIGISLG-ASESPKTIKPLVAALTFHQFFEGMGLGGCITQARFKSRGVAILALFFSLTTPVGIAIGIGISSVYDENSPTALIVEGIFNAAAAGILIYMSLVDLLAADFMNPKMQTNKRLQFGANVSLLLGAGCMSLLAKWA 355          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|1035954972|gb|OAY76870.1| (Zinc transporter 8 [Ananas comosus])

HSP 1 Score: 150.214 bits (378), Expect = 6.997e-38
Identity = 83/185 (44.86%), Postives = 120/185 (64.86%), Query Frame = 0
Query:  298 SDGHNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            S GH+H         DA   +  ++    VI+ ++E+GIV HSV+IGI LG A+ S +  R L+ A+S HQFFEG GL  CI++A+        M   FS+TT +GI+IGIGIS +Y+E S +A +VEG+ N+ AAGIL+Y+ALVD+L E+F   +V+     Q+ + + +LLGAG MS++A WA
Sbjct:  126 SHGHSHGAAVLAASGDASEQLIRYR----VISLVLELGIVVHSVIIGISLG-ASESPSTIRPLVAALSFHQFFEGMGLGGCIVQAKFKLRSIVTMVLFFSLTTPVGILIGIGISSVYNENSPKALIVEGVLNSVAAGILVYMALVDLLAEDFMNPKVQGKAKLQLAINVSLLLGAGLMSLLAKWA 305          
BLAST of EWM25896.1 vs. NCBI_GenBank
Match: gi|672160054|ref|XP_008799797.1| (PREDICTED: zinc transporter 8-like [Phoenix dactylifera])

HSP 1 Score: 150.984 bits (380), Expect = 7.610e-38
Identity = 87/182 (47.80%), Postives = 115/182 (63.19%), Query Frame = 0
Query:  301 HNHSFHEGGGHNDAVHVVQAFKNHSLVIAYIMEVGIVFHSVLIGIGLGTATSSINNTRTLLVAISVHQFFEGAGLSTCILEARLPRMKNAIMFGLFSITTSLGIVIGIGISKMYDEESREAALVEGIFNAFAAGILIYLALVDILQEEFSRREVRQHKIWQIQMMMCVLLGAGAMSVIAIWA 482
            H H+ H G  H  AV        H  VI+ ++E+GIV HSV+IGI LG A+ S +  R L+ A+S HQFFEG GL  CI +A+   M  A M   FS+TT +GI IG GIS +Y+E S  A +VEGI N+ AAGILIY+ALVD+L E+F    V+     Q  + + +L+GAG MS++A WA
Sbjct:  169 HVHATH-GHAHGPAVDGSDKLVRHR-VISQVLELGIVVHSVIIGISLG-ASDSPSTIRPLVAALSFHQFFEGMGLGGCIAQAKFKTMSVATMILFFSLTTPVGIAIGFGISSVYNENSPTALIVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKLQFAINVSLLIGAGLMSLLAKWA 347          
The following BLAST results are available for this feature:
BLAST of EWM25896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107765|gb|EWM25896.1|0.000e+0100.00zip transporter [Nannochloropsis gaditana][more]
gi|553195942|ref|XP_005856235.1|8.343e-17199.58zip transporter, partial [Nannochloropsis gaditana... [more]
gi|1117459333|ref|XP_019424707.1|1.332e-3937.83PREDICTED: zinc transporter 1-like [Lupinus angust... [more]
gi|1098848836|ref|XP_018831282.1|2.885e-3952.87PREDICTED: LOW QUALITY PROTEIN: zinc transporter 4... [more]
gi|1117518114|ref|XP_019443701.1|4.008e-3939.10PREDICTED: zinc transporter 1-like [Lupinus angust... [more]
gi|1012105045|ref|XP_015958434.1|9.877e-3946.49zinc transporter 5 isoform X1 [Arachis duranensis][more]
gi|1021041142|gb|KZM98923.1|1.592e-3847.44hypothetical protein DCAR_013715 [Daucus carota su... [more]
gi|568855573|ref|XP_006481378.1|2.799e-3847.03PREDICTED: zinc transporter 8-like [Citrus sinensi... [more]
gi|1035954972|gb|OAY76870.1|6.997e-3844.86Zinc transporter 8 [Ananas comosus][more]
gi|672160054|ref|XP_008799797.1|7.610e-3847.80PREDICTED: zinc transporter 8-like [Phoenix dactyl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4768rna4768Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications