EWM25925.1, cds4747 (CDS) Nannochloropsis gaditana

Overview
NameEWM25925.1
Unique Namecds4747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:269893..270365 +
Alignment locationCM002464.1:270468..270576 +
Alignment locationCM002464.1:270695..271311 +
Alignment locationCM002464.1:271522..271744 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25925.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100134g12.9884.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:269893..270365 +
CM002464.1supercontigCM002464.1:270468..270576 +
CM002464.1supercontigCM002464.1:270695..271311 +
CM002464.1supercontigCM002464.1:271522..271744 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Homology
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|585107796|gb|EWM25925.1| (hypothetical protein Naga_100134g12 [Nannochloropsis gaditana])

HSP 1 Score: 988.408 bits (2554), Expect = 0.000e+0
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0
Query:    1 MSSSRESVLCDSQQAPVEVRSTWSKGLLWSITCCAVLVIAFILAAFSETGRTRASRWYGTIIFKIKPPMVPVAPFLLTDRKSFESEELHYLWKVENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLCPS 473
            MSSSRESVLCDSQQAPVEVRSTWSKGLLWSITCCAVLVIAFILAAFSETGRTRASRWYGTIIFKIKPPMVPVAPFLLTDRKSFESEELHYLWKVENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLCPS
Sbjct:    1 MSSSRESVLCDSQQAPVEVRSTWSKGLLWSITCCAVLVIAFILAAFSETGRTRASRWYGTIIFKIKPPMVPVAPFLLTDRKSFESEELHYLWKVENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLCPS 473          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|585107793|gb|EWM25922.1| (hypothetical protein Naga_100134g10 [Nannochloropsis gaditana])

HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 420/474 (88.61%), Postives = 438/474 (92.41%), Query Frame = 0
Query:    1 MSSSRESVLCDSQQAPVEVRSTWSKGLLWSITCCAVLVIAFILAAFSETGRTRASR-WYGTIIFKIKPPMVPVAPFLLTDRKSFESEELHYLWKVENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLCPS 473
            M  SRES++C SQ+ P+ +RSTWS  L  S+ CC VL   FILAA S     R SR WY T +  I+ PMVPVAPFLLTDR+SF+SEELH+ WKV+NQ EIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQY+NLVNFLENGVWGGPDPQLENE QWKG+  FYQGTNARFNGRE CDCYREEPA+RRGNIENRYYHNEVLDVWVTFF WFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTS+RSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWV+DVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLE+LAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWD LHFYAPVY GLNKVLLNYLCPS
Sbjct:   27 MKRSRESIMCASQEDPLVMRSTWSITLFRSVNCCVVLFAGFILAALSNIDNIRGSRSWYTTTLSDIRAPMVPVAPFLLTDRESFKSEELHFSWKVDNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLCPS 500          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|553178354|ref|XP_005852543.1| (hypothetical protein NGA_0704500, partial [Nannochloropsis gaditana CCMP526] >gi|422295989|gb|EKU23288.1| hypothetical protein NGA_0704500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 333.183 bits (853), Expect = 1.026e-110
Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0
Query:  149 IVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLL 311
            ++   ++  RYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTS+RSDASAMPLTSTLHLL
Sbjct:    3 LIPFNETFVRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLL 165          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|552817289|ref|XP_005844900.1| (hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis] >gi|307104545|gb|EFN52798.1| hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis])

HSP 1 Score: 125.176 bits (313), Expect = 5.224e-28
Identity = 108/368 (29.35%), Postives = 144/368 (39.13%), Query Frame = 0
Query:  124 LVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGP------DPQLENEFQWKGWLPFYQGTNARFNGREICDCYREE--------PAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLE--QLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQR----QGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLC 471
            L + G  M+ +     A  CL  K +V VGDSLTRYQYL L+ FLE G W  P       P + NE  W     F +GT+A F GRE+CDCYR E        P E+    ENR++        V+ F +        GH                 P   GQTP                                                   C P  C+Q   W +D+      VV  L P  ++ NSG WG      D +   +A + + +V    GRV+++TTT  R   P AP  D      +    +G  +LDA AIT P+  + N+ +        WD  H+ A VY  LN  LLN +C
Sbjct:  105 LSIRGCTMKRY-SHAEAKQCLAGKRLVFVGDSLTRYQYLALIYFLEKGEWPAPLGGVPGQPSVTNEHDWND---FLRGTSALFGGRELCDCYRREYILGVTPRPPEKE-KFENRFFITADGATAVSHFTYTTAPHTVHGH-------------FGFPPHLMGQTP---------------------------------------------------CAPATCNQTADWAFDL--ALRRVVRPLQPTHVIINSGMWGSSNAFGDDKWRSIAAAGLYSVFEQLGRVIWRTTTAAR--GPRAPTRDHDALALKHTAAEGWGVLDAYAITRPLVKMLNKPM--------WDPRHYQAVVYRELNLYLLNMIC 391          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|929750758|ref|XP_014150362.1| (hypothetical protein SARC_11039 [Sphaeroforma arctica JP610] >gi|906943083|gb|KNC76460.1| hypothetical protein SARC_11039 [Sphaeroforma arctica JP610])

HSP 1 Score: 87.0409 bits (214), Expect = 5.905e-15
Identity = 54/126 (42.86%), Postives = 70/126 (55.56%), Query Frame = 0
Query:  123 TLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQ-------WK---GWLPFYQGTNARFNGREICDCYREEPAERRGNI-ENRYYHNEVLDVWVTFF 237
            +LVVDG D + F  R  AL  L  K ++MVGDS  RYQYL++  +LENG W  PD   E + +       W+   GW  F+  TN+  NG E CDC+RE+       I ENRY H E  +V VT+ 
Sbjct:   91 SLVVDGCDWRKFT-RKGALQILSGKHLIMVGDSRVRYQYLSMAFWLENGYW-PPDTYGEGDIKSPAKEGLWRDIGGWKQFFSDTNSYLNGEEECDCFREDKWPIENIIFENRYLHMEKYNVKVTYL 214          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|553192159|ref|XP_005855524.1| (hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526] >gi|422293536|gb|EKU20836.1| hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.411 bits (189), Expect = 7.154e-13
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 0
Query:  155 SLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKG-------WLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWF--NPACGH 246
            +L+RYQYL+L+ +LE G W   +   E    +KG       W  FY+ ++A F  RE+CDCYREE   +  ++ENRYY NE  D+ V+F  WF  +P  GH
Sbjct:    2 TLSRYQYLSLIRYLEEGAW---EATQEKTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREE--GKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGH 97          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|1210530122|dbj|GAX11230.1| (hypothetical protein FisN_34Hu050 [Fistulifera solaris])

HSP 1 Score: 76.6406 bits (187), Expect = 1.113e-11
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 0
Query:  145 RNKSIVMVGDSLTRYQYLNLVNFL-ENGVWGGPD--PQLENEFQWK-GWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWF---------NPACGHQGHNLT 252
            RN +I+ +GDSLTRYQYL+LV FL  NG W  P+  P +  E   + GW  FY  T +     E CDC+RE        IENRYYH+ V +  VT+ Q F         N    HQ H L 
Sbjct:   87 RNLNILFMGDSLTRYQYLDLVYFLSHNGTWPSPNDRPNMVMEKTHRNGWTQFYSFTKSALQPYEQCDCFRE--FNLTTLIENRYYHDPVRNNRVTYLQKFGKLPFKSNWNVTEVHQEHRLV 205          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|1210522211|dbj|GAX18973.1| (hypothetical protein FisN_8Hh194 [Fistulifera solaris])

HSP 1 Score: 74.7146 bits (182), Expect = 5.872e-11
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 0
Query:  145 RNKSIVMVGDSLTRYQYLNLVNFL-ENGVWGGPDPQ----LENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWF 240
            RN +I+ +GDSL+RYQYL+LV FL  NG W  PD      LEN  +  GW+ F+  TNA     E CDC+R   A +   +ENRY+++   +  VT+ Q F
Sbjct:   89 RNLNILFMGDSLSRYQYLDLVYFLSHNGTWPSPDETPNMVLENTHK-HGWVQFFNFTNAALRPYEQCDCFRLHSAIKA--VENRYFYDAERNNSVTYLQKF 186          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|929755524|ref|XP_014152744.1| (hypothetical protein SARC_08736 [Sphaeroforma arctica JP610] >gi|906947695|gb|KNC78842.1| hypothetical protein SARC_08736 [Sphaeroforma arctica JP610])

HSP 1 Score: 72.4034 bits (176), Expect = 3.928e-10
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0
Query:  123 TLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVW-------GGPDPQLENEFQWK-GWLPFYQGTNARFNGREICDCYREEPAERRGNI-ENRYYHNEVLDVWVTFF 237
            +L+V   D Q +  R  A+  L+ K IV VGDS  RYQY+ ++ +LENG W       G   P  E+ +  K GW  F++ T     G E CDCYR +       I ENR+Y+NE  ++ +++F
Sbjct:   96 SLLVSECDWQKYT-RRGAIELLQGKHIVFVGDSRLRYQYVCMIFWLENGYWPPDGEKDGFKSPVKESLWGGKGGWRAFFKDTAGYMKGNEYCDCYRNDHDMYVEPIYENRFYYNERYNLRLSYF 218          
BLAST of EWM25925.1 vs. NCBI_GenBank
Match: gi|552838638|ref|XP_005849620.1| (hypothetical protein CHLNCDRAFT_143111 [Chlorella variabilis] >gi|307109280|gb|EFN57518.1| hypothetical protein CHLNCDRAFT_143111 [Chlorella variabilis])

HSP 1 Score: 71.2478 bits (173), Expect = 5.911e-10
Identity = 102/398 (25.63%), Postives = 153/398 (38.44%), Query Frame = 0
Query:  102 ATTEANGARNVTGPGAGVAACT--LVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWG--GPDPQLENEFQWKG--------------WLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSG------HWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFF----QRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLC 471
            AT   +      G GAG  +    LV++   ++ F   + A  CL  + +V +GDSL+RYQYL+LV+FL+ G W      P L +  QW                 L + +G+   F  R  CDC     +  +   E+R Y ++  ++   F  W     G +GH   W +    PP L+  P      P +         G H +E                                  C PG C   P W   +      VV  L P  ++ N+G      H+   P A+    +A++A+EAV    G  +++TTT P      +   D  DF       + + +LDA  +  P+ A D           F+D  H +   Y  LN VLLN LC
Sbjct:   11 ATWSTSDTNTHAGAGAGPPSFLPRLVLERCVLRRFTA-SQARQCLAGRPLVFIGDSLSRYQYLSLVSFLDRGSWPRVSQHPSLVHLHQWGADKMLSGKKSAHKDKKLEYLRGSTDAFGSRMRCDC-----SIAKDWFESRTYEHQKHNITAHFMWWRGWPEGLEGH---WGH----PPFLNATPCH----PSIC--------GMHGEE----------------------------------CPPGQCSPVPDWSMPLPEALRQVVAQLRPAAILLNAGLWRNHFHFQPWPPAFS-RAVARAAVEAVAPQRGMALWRTTT-PSTRFSISRSWD-GDFLGAAASERRLMVLDAWELGRPLLAFDPL--------PFFDRSHPWPEFYTELNTVLLNMLC 338          
The following BLAST results are available for this feature:
BLAST of EWM25925.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107796|gb|EWM25925.1|0.000e+0100.00hypothetical protein Naga_100134g12 [Nannochlorops... [more]
gi|585107793|gb|EWM25922.1|0.000e+088.61hypothetical protein Naga_100134g10 [Nannochlorops... [more]
gi|553178354|ref|XP_005852543.1|1.026e-11093.87hypothetical protein NGA_0704500, partial [Nannoch... [more]
gi|552817289|ref|XP_005844900.1|5.224e-2829.35hypothetical protein CHLNCDRAFT_138448 [Chlorella ... [more]
gi|929750758|ref|XP_014150362.1|5.905e-1542.86hypothetical protein SARC_11039 [Sphaeroforma arct... [more]
gi|553192159|ref|XP_005855524.1|7.154e-1342.57hypothetical protein NGA_0609100 [Nannochloropsis ... [more]
gi|1210530122|dbj|GAX11230.1|1.113e-1142.15hypothetical protein FisN_34Hu050 [Fistulifera sol... [more]
gi|1210522211|dbj|GAX18973.1|5.872e-1143.56hypothetical protein FisN_8Hh194 [Fistulifera sola... [more]
gi|929755524|ref|XP_014152744.1|3.928e-1037.10hypothetical protein SARC_08736 [Sphaeroforma arct... [more]
gi|552838638|ref|XP_005849620.1|5.911e-1025.63hypothetical protein CHLNCDRAFT_143111 [Chlorella ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4759rna4759Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications