EWM25935.1, cds4743 (CDS) Nannochloropsis gaditana

Overview
NameEWM25935.1
Unique Namecds4743
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:260311..260473 -
Alignment locationCM002464.1:260050..260235 -
Alignment locationCM002464.1:259568..259889 -
Alignment locationCM002464.1:259082..259487 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25935.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100134g8.9894.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:260311..260473 -
CM002464.1supercontigCM002464.1:260050..260235 -
CM002464.1supercontigCM002464.1:259568..259889 -
CM002464.1supercontigCM002464.1:259082..259487 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585107806|gb|EWM25935.1| (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana])

HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query:    1 MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST 358
            MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST
Sbjct:    1 MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST 358          
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|553184915|ref|XP_005854167.1| (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >gi|553185580|ref|XP_005854270.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294788|gb|EKU22088.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294890|gb|EKU22190.1| hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.787 bits (569), Expect = 3.894e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
Query:  118 MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVG 224
            MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFL+ETVRQSADLAIVG
Sbjct:    1 MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVG 107          
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585111758|gb|EWM29236.1| (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana])

HSP 1 Score: 93.9745 bits (232), Expect = 1.250e-17
Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
Query:   62 HVRVVIRTHAREQLQLRSLIYGLRAQSE------GQAGFKADFVLVPTEPASLQTYQRLC----------------NEMNVG--FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADL 220
            HVRV+IR H  ++    SLI+ +RAQ +      G   F  DF LV TE   L    R+                 + ++V     D+++ +   +FY     R +   C+ A    Y  +     V  +CD+D++ YY ATD  +   +  C  CTHVLVTN DN Y P FL   +   ADL
Sbjct:  180 HVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADL 362          
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585099865|gb|EWM20344.1| (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana])

HSP 1 Score: 81.2629 bits (199), Expect = 2.110e-13
Identity = 53/192 (27.60%), Postives = 88/192 (45.83%), Query Frame = 0
Query:   41 LRREAKMSIPWVIEGEPREPA---------HVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGF-----KADFVLVPTEPASLQTYQRLCNEMNVG----FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETV 214
            L+ E+K   PW+     R P+         HVR +IR H  +   ++ +++ L  Q +    F       DF LVPTE   +     +     +     F  +Y ++L  TF++    R +   C+               + + C +D++V+Y ATD A+A     C  CTH ++TNGDN Y P++L+ET+
Sbjct:   64 LQEESK---PWLGSQGLRAPSVSNATNIHHHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELC-RCTWCTHAVITNGDNCYHPNYLKETL 251          
The following BLAST results are available for this feature:
BLAST of EWM25935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107806|gb|EWM25935.1|0.000e+0100.00hypothetical protein Naga_100134g8 [Nannochloropsi... [more]
gi|553184915|ref|XP_005854167.1|3.894e-6999.07hypothetical protein NGA_0179802 [Nannochloropsis ... [more]
gi|585111758|gb|EWM29236.1|1.250e-1731.69hypothetical protein Naga_100119g17 [Nannochlorops... [more]
gi|585099865|gb|EWM20344.1|2.110e-1327.60hypothetical protein Naga_100252g10 [Nannochlorops... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4755rna4755Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications