EWM25935.1, cds4743 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585107806|gb|EWM25935.1| (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana]) HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0 Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query: 1 MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST 358
MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST
Sbjct: 1 MPPPRGFLSFVAVALVLIMSPMLFMRNPAETYMNLLGTRGLRREAKMSIPWVIEGEPREPAHVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGFKADFVLVPTEPASLQTYQRLCNEMNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVGGIGPRKETFLELFACRCWAEGGARCRLLDGGQRLGAGLELCRVQKPAPHVSQLTDARAAIGKNYNTVETSCKPGYCGGLILSGVLGRNLKQFCIQLYSFILEPRILVYPLTSVCSEKTDTSPKSTRFARYEFST 358
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|553184915|ref|XP_005854167.1| (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >gi|553185580|ref|XP_005854270.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294788|gb|EKU22088.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294890|gb|EKU22190.1| hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 223.787 bits (569), Expect = 3.894e-69 Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 118 MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADLAIVG 224
MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFL+ETVRQSADLAIVG
Sbjct: 1 MNVGFDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVG 107
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585111758|gb|EWM29236.1| (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana]) HSP 1 Score: 93.9745 bits (232), Expect = 1.250e-17 Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
Query: 62 HVRVVIRTHAREQLQLRSLIYGLRAQSE------GQAGFKADFVLVPTEPASLQTYQRLC----------------NEMNVG--FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADL 220
HVRV+IR H ++ SLI+ +RAQ + G F DF LV TE L R+ + ++V D+++ + +FY R + C+ A Y + V +CD+D++ YY ATD + + C CTHVLVTN DN Y P FL + ADL
Sbjct: 180 HVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADL 362
BLAST of EWM25935.1 vs. NCBI_GenBank
Match: gi|585099865|gb|EWM20344.1| (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana]) HSP 1 Score: 81.2629 bits (199), Expect = 2.110e-13 Identity = 53/192 (27.60%), Postives = 88/192 (45.83%), Query Frame = 0
Query: 41 LRREAKMSIPWVIEGEPREPA---------HVRVVIRTHAREQLQLRSLIYGLRAQSEGQAGF-----KADFVLVPTEPASLQTYQRLCNEMNVG----FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETV 214
L+ E+K PW+ R P+ HVR +IR H + ++ +++ L Q + F DF LVPTE + + + F +Y ++L TF++ R + C+ + + C +D++V+Y ATD A+A C CTH ++TNGDN Y P++L+ET+
Sbjct: 64 LQEESK---PWLGSQGLRAPSVSNATNIHHHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFPYPTLSMDFALVPTEVRGIPVVDSIARYFWLNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELC-RCTWCTHAVITNGDNCYHPNYLKETL 251 The following BLAST results are available for this feature:
BLAST of EWM25935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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