EWM25930.1, cds4741 (CDS) Nannochloropsis gaditana

Overview
NameEWM25930.1
Unique Namecds4741
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:255970..256311 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25930.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100134g6.9889.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:255970..256311 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM25930.1 vs. NCBI_GenBank
Match: gi|585107801|gb|EWM25930.1| (hypothetical protein Naga_100134g6 [Nannochloropsis gaditana])

HSP 1 Score: 229.18 bits (583), Expect = 4.243e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 
Query:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAAR 113
            MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAAR
Sbjct:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAAR 113
[Close]
BLAST of EWM25930.1 vs. NCBI_GenBank
Match: gi|553185594|ref|XP_005854273.1| (hypothetical protein NGA_0182520, partial [Nannochloropsis gaditana CCMP526] >gi|422294791|gb|EKU22091.1| hypothetical protein NGA_0182520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.491 bits (589), Expect = 5.217e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 
Query:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA 112
            MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA
Sbjct:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA 112
[Close]
BLAST of EWM25930.1 vs. NCBI_GenBank
Match: gi|553184928|ref|XP_005854170.1| (hypothetical protein NGA_0182510 [Nannochloropsis gaditana CCMP526] >gi|422294893|gb|EKU22193.1| hypothetical protein NGA_0182510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.18 bits (583), Expect = 2.162e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 
Query:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA 112
            MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA
Sbjct:    1 MESLHVIHYRAYRTTFLAARLGEKAMSAGVEAARRRSREDRTTSQQEEQRPLHGESTVQGLDYELDSPLRRNFKALLVLAVSVYGLKEAKFVENLLWNKKVGGAALAVSVAA 112
The following BLAST results are available for this feature:
BLAST of EWM25930.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107801|gb|EWM25930.1|4.243e-76100.00hypothetical protein Naga_100134g6 [Nannochloropsi... [more]
gi|553185594|ref|XP_005854273.1|5.217e-75100.00hypothetical protein NGA_0182520, partial [Nannoch... [more]
gi|553184928|ref|XP_005854170.1|2.162e-73100.00hypothetical protein NGA_0182510 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4753rna4753Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications