EWM25941.1, cds4733 (CDS) Nannochloropsis gaditana

Overview
NameEWM25941.1
Unique Namecds4733
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:240378..240424 -
Alignment locationCM002464.1:239777..240128 -
Alignment locationCM002464.1:239503..239688 -
Alignment locationCM002464.1:239209..239272 -
Alignment locationCM002464.1:238794..239107 -
Alignment locationCM002464.1:238427..238609 -
Alignment locationCM002464.1:237812..238253 -
Alignment locationCM002464.1:237527..237609 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25941.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100469g5.6989.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:240378..240424 -
CM002464.1supercontigCM002464.1:239777..240128 -
CM002464.1supercontigCM002464.1:239503..239688 -
CM002464.1supercontigCM002464.1:239209..239272 -
CM002464.1supercontigCM002464.1:238794..239107 -
CM002464.1supercontigCM002464.1:238427..238609 -
CM002464.1supercontigCM002464.1:237812..238253 -
CM002464.1supercontigCM002464.1:237527..237609 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|585107813|gb|EWM25941.1| (hypothetical protein Naga_100469g5 [Nannochloropsis gaditana])

HSP 1 Score: 1163.29 bits (3008), Expect = 0.000e+0
Identity = 556/556 (100.00%), Postives = 556/556 (100.00%), Query Frame = 0
Query:    1 MRRTLRAMVGLLCFTSISSLGQSQKLLRSTDADSSEDQDTNSMRDSTNTKDQVIVDLDGAFSPTRGADRAEGRAKTPKIRSTVGSPDRPPVAALQFPTVDQDDKRAAIEWDVDTNEVARGYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRLPNATINQLILRMYKPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFYPTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWSDQAIFLPLEVEDVHPAKSIVLFLRSILAHGPKSAGAASKACGNSALCGNPPFIRSIMQEQYPELEVYHCDSCEGKPPLVTRYEDYFKNH 556
            MRRTLRAMVGLLCFTSISSLGQSQKLLRSTDADSSEDQDTNSMRDSTNTKDQVIVDLDGAFSPTRGADRAEGRAKTPKIRSTVGSPDRPPVAALQFPTVDQDDKRAAIEWDVDTNEVARGYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRLPNATINQLILRMYKPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFYPTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWSDQAIFLPLEVEDVHPAKSIVLFLRSILAHGPKSAGAASKACGNSALCGNPPFIRSIMQEQYPELEVYHCDSCEGKPPLVTRYEDYFKNH
Sbjct:    1 MRRTLRAMVGLLCFTSISSLGQSQKLLRSTDADSSEDQDTNSMRDSTNTKDQVIVDLDGAFSPTRGADRAEGRAKTPKIRSTVGSPDRPPVAALQFPTVDQDDKRAAIEWDVDTNEVARGYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRLPNATINQLILRMYKPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFYPTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWSDQAIFLPLEVEDVHPAKSIVLFLRSILAHGPKSAGAASKACGNSALCGNPPFIRSIMQEQYPELEVYHCDSCEGKPPLVTRYEDYFKNH 556          
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|585112016|gb|EWM29475.1| (hypothetical protein Naga_100128g9 [Nannochloropsis gaditana])

HSP 1 Score: 125.561 bits (314), Expect = 1.658e-27
Identity = 123/472 (26.06%), Postives = 202/472 (42.80%), Query Frame = 0
Query:  123 WPHCYWHAKYAINYTHFGLIDPNAVYWGQLVR-GSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELR-----LPNAT-------------INQLILRMY---KPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDW--LPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIR-VANVGDYEVRYLSMSTADGFY--PTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWSDQAIFLPL--EVEDVHPAKSIVLFLRSILAH--------GPKSAGAASKACGNSALCGNPPFIRSIMQEQYPELEVYHCDSCEG-KPPLVTRYEDYFKNH 556
            +P C W A    +     L+DPNAVY  QL+   +  +  YK+   FP+ +YFS++ Y+ +    P   + D  + P WG NP+   + T E  G YE+Y+T  G +G+ NE+R       NAT             ++ ++LR+Y   +P  + G       ++ P +    D+G+    W+ L  CS                 Q+  A    G  V                +  ++++   W  L     ++++  D P +   +N     +   N ++ I    P+ A GLF G R V NV +Y  RY S + AD F   PT +S+  + M+ FY         WD   +I  A +    +AC      A+FLP   E+ + +P     +  R +LA           +S    +  CG    C +  F+++ + +QYP L+VY CD   G K P V  Y+ Y +++
Sbjct:   15 YPFCAWDATTDESIYTPLLLDPNAVYQPQLLSFAAHPHRVYKISASFPRVVYFSYETYSLR--GHPLTSLPDLRIDPSWGKNPYRE-ETTEEGAGTYEIYVTRDGNKGWPNEVRGLSEDHTNATQAAFSRVMDFVDNLSVVMLRLYTTEQPPSVWG------GVDRPVISYTDDLGQ---TWKELQPCSDTT------------RYQFNRAMRQIGWTVY---------------DFRYLIYHSQWYRLRSCHLLSKREADHPALFPDVNV----QLGGNFVMVIEGTAPLTATGLFEGPRPVWNVTNYSTRYWSFAAADVFVPGPTYSSLTAQDMENFY------GKGWDRRYKIVGATSIDIVKACGLDDPHALFLPYKNELMNNNPPAVPAVIEREMLARHMAMGLPSDKQSIEYVTSNCGKENKCLSIDFMKASLGDQYPSLQVYTCDVATGIKTPFV--YQPYRRDY 435          
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|585101524|gb|EWM21339.1| (hypothetical protein Naga_100075g21 [Nannochloropsis gaditana])

HSP 1 Score: 107.842 bits (268), Expect = 4.133e-21
Identity = 108/417 (25.90%), Postives = 180/417 (43.17%), Query Frame = 0
Query:  161 AYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRL--PNAT--INQLILRMYKPDPILGPSISIIDLE------PPTLYMAHDMGEGKREWRALPRCS----AAKEKLLADLS---NAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLP-PELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADG--FYPTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWS---DQAIFLPLEVEDVHPAKSIVLFLRSILAHGPK----SAGAASKACGNSA-------LCGNPPFIRSIMQEQYPELEVYHCDSCEGKP 543
             Y+++G+FP   YFS+ VY +   +      TD  ++P  G NPF++ + T ++MG YE+Y++  G +GY NE+    P++T     L  R+   DP  G   S  + E      P    + H  G    EW  + RCS    A  E+++ +L    N W+                P   ++    N T+    F LF  +  P     +A ++ +  Y+ +C+      + Y   +++I  KLP    GLF  IRVA+   Y+ RY+S ++AD    YP+  +I  R +   Y+    G S WD    +    +   A+ C  ++   D  + L       H      + +R +L  G K    + G A+    N         LC      + ++QE YP ++++ CD    KP
Sbjct:  158 VYRIRGKFPYVRYFSFTVYDASLQSISTLHDTD--IRPSSGKNPFNDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDSTSPYALLAFRLQLLDPRAGEDRSGKNREWGYVDMPLVEILNHRNG----EWDIIRRCSDEFQARTEEVIENLDLTFNTWW----------------PKNLQIGTECNATE----FSLFDPEQNPIIRRGVAVRNANENYIFWCMPKEIGKKDY---IIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFTSADAIPLYPSYETIHDRDIFNHYSTDPFG-SDWDRMYNLVATSDVNLAKKCGLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGGGKERRGTEGVANVNLRNECESPTGKLLCDPARSAKVLLQEFYPLVQIWTCDYQNLKP 544          
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|585102674|gb|EWM22223.1| (hypothetical protein Naga_100312g6 [Nannochloropsis gaditana])

HSP 1 Score: 79.7221 bits (195), Expect = 3.611e-12
Identity = 112/445 (25.17%), Postives = 174/445 (39.10%), Query Frame = 0
Query:  125 HCYWHAKYAINYTHFGLIDPNAVYWGQLV-RGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRL----PNATINQLILRMYKPDPILGPSISII--DLEPPTL-YMAHDMGEGKRE-WRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGR-GVIPILREMNCPM-NPTKGNVSFVLFQGDWLPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFY--PTIASIDGRGMQRFYNYSSAGNSSWD----GWVEIRVALNEAKARACNFWSDQAIFLPL---EVEDVHPAKSIVLFLRSILAHGPKSAGAAS---------KAC----GNSALCGNPPFIRSIMQEQYPELEVYHC 536
            +C W A   +N+ +    D  AVY    V +  G     +++G +P   YFS+Q Y  + S  P   + D+ +K + G NPF+ P  T  D G Y+V++T +G++GY NEL       NAT   ++LR+Y  D    P  + I   + PP + Y   +   G+   W  L +C+    K+ +   +      Y     TE + G  P      CP  N     +     QG                                 N +  I   LP    GL++   VA+      RYLS+ST D     P + ++    +  FY+        W+       +I  A + A A+ C   +  A+FL          +PA    L LR IL+   +    A+         +AC    G  A C    F  S+M+  YP++  Y C
Sbjct:   43 NCAWQASVGLNF-NIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPK-SLDPVASVRDYEIKSVRGVNPFATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASGSNATGAFVLLRVYAYDK-QSPDKTDIWGAVAPPVVKYKLFNPSSGQGGLWYTLDQCTPNNTKIASQFIST-IATGYSRVLATENKAGANP------CPTWNSRDQFLDGGGVQG---------------------------------NLVAVITGTLPPSPGGLWTPPFVADFTKSNARYLSLSTYDLNIPGPVLQTLFDSDIVDFYSQYYGSEYLWNLRNSRQYKIVAAADLASAKRCGHLTRDAMFLSTWGQTARVSYPA----LVLREILSQSSRIGDTANNTQSIHNIKQACESIAGVGAKCETSSFASSVMKNFYPKVTYYDC 440          
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|553186469|ref|XP_005854425.1| (hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526] >gi|422294638|gb|EKU21938.1| hypothetical protein NGA_0235800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.781 bits (164), Expect = 2.585e-8
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 0
Query:  125 HCYWHAKYAINYTHFGLIDPNAVYWGQLV-RGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRL----PNATINQLILRMYKPD 252
            +C W A   +N+ +    D  AVY    V +  G     +++G +P   YFS+Q Y  + S  P   + D+ +K + G NPF+ P  T  D G Y+V++T +G++GY NEL       NAT   ++LR+Y  D
Sbjct:  189 NCAWQASVGLNF-NIAFPDGYAVYHVLFVPKLQGPMDVIRIEGDYPFVRYFSYQSYDPK-SLDPVASVRDYEIKSVRGVNPFATPGTTLGDKGKYQVHVTLNGDQGYPNELPTIASGSNATGAFVLLRVYAYD 319          
BLAST of EWM25941.1 vs. NCBI_GenBank
Match: gi|585109295|gb|EWM27118.1| (hypothetical protein Naga_100046g25 [Nannochloropsis gaditana])

HSP 1 Score: 65.0846 bits (157), Expect = 2.207e-7
Identity = 92/336 (27.38%), Postives = 144/336 (42.86%), Query Frame = 0
Query:  124 PHCYWHAKYAINYTHFGLIDPN--AVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKP-LWGTNPFSNPDATPEDM--GGYEVYLTPSGEEGYVNELR-LPNATIN---QLILRMYKPDPILGPSISI--------IDLE-------PPTLYM--AHDMGEGKREWRALPRCSAAKE---KLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLPPELAIARQ----SQDSPYMMYCINPYNDWRHYLN---TLL--KIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFYP 421
            P+C W  ++  N+  + +  P+  ++Y    ++ S  +    +   FP + Y S+Q Y  +T  +  Q + D  + P   G N ++N  A  E +  GGY +Y+T  G++ Y NELR LP++  +    L  R+Y  + + GP  +          DL        PP LY   AH + +G  EWR +P C   +    KLLA LS  W     P A               +  + P K N  F+    D         RQ    S+D+ Y+     P    RH  N    +L  ++   LP +   L++   VAN  DY+VRY+S+S      P
Sbjct:  136 PYCAW--RFVGNHDAWNVAFPDMRSLYHVMQIQMSKGDEFKLVAESFPYARYCSYQTYDLRTLMS-HQSLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRALPDSIESGQFDLFFRIYVEEALQGPPQAPWGHLPPYGKDLAFEWGWAPPPRLYAKRAH-LKDG--EWREVPFCQYRRRKGFKLLAYLSEIWPAPSPPFAG--------------HPAVAPNKANNVFLPKYTD---------RQGKFASKDANYVASVAEP----RHVRNGSEAMLWARVTGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIP 438          
The following BLAST results are available for this feature:
BLAST of EWM25941.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585107813|gb|EWM25941.1|0.000e+0100.00hypothetical protein Naga_100469g5 [Nannochloropsi... [more]
gi|585112016|gb|EWM29475.1|1.658e-2726.06hypothetical protein Naga_100128g9 [Nannochloropsi... [more]
gi|585101524|gb|EWM21339.1|4.133e-2125.90hypothetical protein Naga_100075g21 [Nannochlorops... [more]
gi|585102674|gb|EWM22223.1|3.611e-1225.17hypothetical protein Naga_100312g6 [Nannochloropsi... [more]
gi|553186469|ref|XP_005854425.1|2.585e-833.83hypothetical protein NGA_0235800 [Nannochloropsis ... [more]
gi|585109295|gb|EWM27118.1|2.207e-727.38hypothetical protein Naga_100046g25 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4745rna4745Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications