EWM25944.1, cds4730 (CDS) Nannochloropsis gaditana

Overview
NameEWM25944.1
Unique Namecds4730
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:233968..234558 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25944.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100695g3.10416.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:233968..234558 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25944.1 vs. NCBI_GenBank
Match: gi|585107818|gb|EWM25944.1| (hypothetical protein Naga_100695g3 [Nannochloropsis gaditana])

HSP 1 Score: 387.111 bits (993), Expect = 6.370e-136
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MLRIWFKYLTARLLLVSVALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSGASLFPPSFPPSVCLGLRAISPSRFHGAQGGGTVEGLLLMRRWKAFHYSDGGRLVINGSMLTWGTCLPLHAPTKTSPSLSPSLPPFLPSSLRPPQTCPTGSPRASWWRTTSTKATGGSC 196
            MLRIWFKYLTARLLLVSVALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSGASLFPPSFPPSVCLGLRAISPSRFHGAQGGGTVEGLLLMRRWKAFHYSDGGRLVINGSMLTWGTCLPLHAPTKTSPSLSPSLPPFLPSSLRPPQTCPTGSPRASWWRTTSTKATGGSC
Sbjct:    1 MLRIWFKYLTARLLLVSVALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSGASLFPPSFPPSVCLGLRAISPSRFHGAQGGGTVEGLLLMRRWKAFHYSDGGRLVINGSMLTWGTCLPLHAPTKTSPSLSPSLPPFLPSSLRPPQTCPTGSPRASWWRTTSTKATGGSC 196          
BLAST of EWM25944.1 vs. NCBI_GenBank
Match: gi|1147709932|dbj|BAW99691.1| (lysophosphatidate acyltransferase 3 [Nannochloropsis sp. NIES-2145])

HSP 1 Score: 116.316 bits (290), Expect = 4.199e-27
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0
Query:    7 KYLTARLLLVSVALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSG 78
            K++T RLL VSV LV SS+GAN+MALALFLVIRPFSRSLYRRLVSQ VACMWIDALSLLLPGT IHI  DS 
Sbjct:    7 KHMTLRLLFVSVCLVTSSIGANMMALALFLVIRPFSRSLYRRLVSQCVACMWIDALSLLLPGTNIHIAADSD 78          
BLAST of EWM25944.1 vs. NCBI_GenBank
Match: gi|1210525699|dbj|GAX15515.1| (lysocardiolipin and lysophospholipid acyltransferase [Fistulifera solaris])

HSP 1 Score: 58.9214 bits (141), Expect = 7.320e-7
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 0
Query:   14 LLVSVALVVSSLGANLMALALFLVIRPFSRSLYRRLVSQYVACMWIDALSLLLPGTQIHITGDSG 78
            L+ S   ++   G   + + LF+ +RPFS+++YRRL +Q  A  ++DA++LLLP T+I++TGDS 
Sbjct:   53 LITSFVALLCIFGLMTILVVLFVTVRPFSQNVYRRLAAQLGAASFLDAIALLLPNTKIYLTGDSD 117          
The following BLAST results are available for this feature:
BLAST of EWM25944.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107818|gb|EWM25944.1|6.370e-136100.00hypothetical protein Naga_100695g3 [Nannochloropsi... [more]
gi|1147709932|dbj|BAW99691.1|4.199e-2781.94lysophosphatidate acyltransferase 3 [Nannochlorops... [more]
gi|1210525699|dbj|GAX15515.1|7.320e-741.54lysocardiolipin and lysophospholipid acyltransfera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4742rna4742Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications