EWM25963.1, cds4711 (CDS) Nannochloropsis gaditana

Overview
NameEWM25963.1
Unique Namecds4711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:182749..182792 +
Alignment locationCM002464.1:183737..183842 +
Alignment locationCM002464.1:184017..184133 +
Alignment locationCM002464.1:184350..184475 +
Alignment locationCM002464.1:184566..184666 +
Alignment locationCM002464.1:184820..184985 +
Alignment locationCM002464.1:185085..185253 +
Alignment locationCM002464.1:185330..185334 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25963.1
Productgdp-mannose -dehydratase
Orig transcript idgnl|cribi|Naga_100691g3.2997.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:182749..182792 +
CM002464.1supercontigCM002464.1:183737..183842 +
CM002464.1supercontigCM002464.1:184017..184133 +
CM002464.1supercontigCM002464.1:184350..184475 +
CM002464.1supercontigCM002464.1:184566..184666 +
CM002464.1supercontigCM002464.1:184820..184985 +
CM002464.1supercontigCM002464.1:185085..185253 +
CM002464.1supercontigCM002464.1:185330..185334 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase_N
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|585107848|gb|EWM25963.1| (gdp-mannose -dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MHMLPHLFSSSHIRLQPALSPLSFSMEHETGGFDTANMSMPEAVFSPDAQVEYNGAGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLV 277
            MHMLPHLFSSSHIRLQPALSPLSFSMEHETGGFDTANMSMPEAVFSPDAQVEYNGAGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLV
Sbjct:    1 MHMLPHLFSSSHIRLQPALSPLSFSMEHETGGFDTANMSMPEAVFSPDAQVEYNGAGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLV 277          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|676383345|ref|XP_009034951.1| (hypothetical protein AURANDRAFT_23507 [Aureococcus anophagefferens] >gi|323454249|gb|EGB10119.1| hypothetical protein AURANDRAFT_23507 [Aureococcus anophagefferens])

HSP 1 Score: 385.956 bits (990), Expect = 1.431e-131
Identity = 179/216 (82.87%), Postives = 199/216 (92.13%), Query Frame = 0
Query:   61 KVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            KVAL+TG+TGQDGSYL EFLLEKGYIVHGIIRRSS+FNT RIEH+YKD HA  VR FLHYGDLTDS+NL  +IS+++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+GALRLLNA+R+ GLEK+ RLYQASTSELYGKVQ +PQ+ETTPFYPRSPYGVAKQYAYW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAV RI++GLQ TLYL
Sbjct:    5 KVALVTGITGQDGSYLTEFLLEKGYIVHGIIRRSSSFNTGRIEHIYKDMHADDVRLFLHYGDLTDSSNLFHIISEVKPDEIYNLGAMSHVKVSFEMSEYTAEADGVGALRLLNAMRSAGLEKSCRLYQASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKRGLQSTLYL 220          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|676396195|ref|XP_009041375.1| (hypothetical protein AURANDRAFT_33270 [Aureococcus anophagefferens] >gi|323448047|gb|EGB03951.1| hypothetical protein AURANDRAFT_33270 [Aureococcus anophagefferens])

HSP 1 Score: 379.793 bits (974), Expect = 5.861e-129
Identity = 178/215 (82.79%), Postives = 195/215 (90.70%), Query Frame = 0
Query:   62 VALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            VAL+TGVTGQDGSYL EFLLEKGY+VHGIIRRSS+FNT RIEH+YKD HA  VR FLHYGDLTDS+NL  +IS+++PDEIYNLGAMSHVKVSF+MSEYTA+ DGIG LRLLNAVR+ GLEK+ RLYQASTSELYGKVQ +PQ+ETTPFYPRSPYGVAKQYAYW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAV RI+   QKTLYL
Sbjct:   17 VALVTGVTGQDGSYLTEFLLEKGYVVHGIIRRSSSFNTGRIEHIYKDMHADDVRLFLHYGDLTDSSNLFHIISEVKPDEIYNLGAMSHVKVSFEMSEYTAEADGIGTLRLLNAVRSAGLEKSCRLYQASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYL 231          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|869116029|gb|AKP06418.1| (GDP-D-mannose 4,6-dehydratase [Saccharina japonica])

HSP 1 Score: 378.252 bits (970), Expect = 1.903e-128
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 0
Query:   47 PDAQVEYNGAGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            P+ +      GE  K A++TG+TGQDGSYL EFLLEKGY VHGIIRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+LVNYREAY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QKT+YL
Sbjct:    4 PEVKKSKVADGETPKKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYL 233          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|1032153204|gb|OAO16564.1| (gdp-d-mannose 4,6-dehydratase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 376.326 bits (965), Expect = 2.881e-127
Identity = 175/223 (78.48%), Postives = 198/223 (88.79%), Query Frame = 0
Query:   54 NGAGERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            + A +R KVAL+TG+TGQDGSYL E LL KGY VHGIIRRSS+FNT RI HLYKD H  GV+FFLHYGDLTDS+NL  L+++I+PDEIYNLGA SHVKVSF +SEYTA+VDGIG LRLLNA+R CGLEK TRLYQASTSELYGKVQ +PQ+E TPFYPRSPYGVAKQ++YW++VNYREAY+MFL NGILFNHESPRRGPTFVTRKITRAVARI+ G+Q  LYL
Sbjct:   16 SAAEQRAKVALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHNKGVKFFLHYGDLTDSSNLCGLMAKIQPDEIYNLGAQSHVKVSFDLSEYTAEVDGIGTLRLLNAMRTCGLEKKTRLYQASTSELYGKVQAIPQNEKTPFYPRSPYGVAKQFSYWMIVNYREAYNMFLCNGILFNHESPRRGPTFVTRKITRAVARIKLGVQDCLYL 238          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|299471989|emb|CBN80072.1| (gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 373.629 bits (958), Expect = 9.256e-127
Identity = 171/216 (79.17%), Postives = 194/216 (89.81%), Query Frame = 0
Query:   61 KVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            K A++TG+TGQDGSYL EFLLEKGY VHGIIRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QKT+YL
Sbjct:   13 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYL 228          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|855302723|ref|XP_012894519.1| (uncharacterized protein [Blastocystis hominis] >gi|300175160|emb|CBK20471.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 373.244 bits (957), Expect = 2.568e-126
Identity = 174/219 (79.45%), Postives = 194/219 (88.58%), Query Frame = 0
Query:   58 ERRKVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            E+RKVAL+TG+TGQDGSYL E LL KGY VHGIIRRSS+FNT RI HLYKD H  GVRFFLHYGDLTDS+NL  L+++I+PDEIYNLGA SHVKVSF +SEY+A+VDGIG LRLLNA+R CGLEK TRLYQASTSELYGKVQ +PQ+E TPFYPRSPY VAKQ++YWI+VNYREAY MFL NGILFNHESPRRGPTFVTRKITRAV RI+ G+Q  LYL
Sbjct:    9 EKRKVALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHNQGVRFFLHYGDLTDSSNLCGLMAKIQPDEIYNLGAQSHVKVSFDLSEYSAEVDGIGTLRLLNAIRTCGLEKKTRLYQASTSELYGKVQAIPQNEKTPFYPRSPYSVAKQFSYWIVVNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVVRIKLGVQDCLYL 227          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|299117431|emb|CBN73934.1| (gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculosus])

HSP 1 Score: 371.318 bits (952), Expect = 5.796e-126
Identity = 170/216 (78.70%), Postives = 193/216 (89.35%), Query Frame = 0
Query:   61 KVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            K A++TG+TGQDGSYL EFLLEKGY VHGIIRRSS+FNT RI+H+Y+DRH + VR  LHYGDLTDSTNL  +I +++PDEIYNLGAMSHVKVSF+MSEYTA+ DG+G LRLLNA+R+ GLEK TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QK +YL
Sbjct:    2 KKAIITGITGQDGSYLAEFLLEKGYEVHGIIRRSSSFNTQRIDHIYRDRHESAVRLKLHYGDLTDSTNLMHIIYEVQPDEIYNLGAMSHVKVSFEMSEYTAEADGVGVLRLLNAIRSAGLEKKTRLYQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKCIYL 217          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|224001660|ref|XP_002290502.1| (gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220973924|gb|EED92254.1| gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 369.007 bits (946), Expect = 8.151e-125
Identity = 170/216 (78.70%), Postives = 189/216 (87.50%), Query Frame = 0
Query:   61 KVALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            KVAL+TG+TGQDGSYL E LL KGY VHGIIRRSS+FNT RI+H+Y+DRH  GV+ FLHYGDL D+TNL  +I+ ++PDEIYNLGAMSHVKVSF M EYTAD DG+G LR+L+A+RACGLEK+ R YQASTSELYGKVQEVPQSETTPFYPRSPY VAKQYA+WILVNYREAY M L NGILFNHESPRRG TFVTRKIT AVARI +GL K LYL
Sbjct:    5 KVALITGITGQDGSYLTELLLSKGYTVHGIIRRSSSFNTGRIDHIYRDRHETGVKLFLHYGDLCDATNLITIIANVKPDEIYNLGAMSHVKVSFDMPEYTADCDGVGVLRMLDAIRACGLEKSCRFYQASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMHLTNGILFNHESPRRGATFVTRKITIAVARITEGLDKCLYL 220          
BLAST of EWM25963.1 vs. NCBI_GenBank
Match: gi|950884241|ref|XP_014525236.1| (GDP-mannose dehydratase [Blastocystis sp. subtype 4] >gi|902859847|gb|KNB41793.1| GDP-mannose dehydratase [Blastocystis sp. subtype 4])

HSP 1 Score: 365.925 bits (938), Expect = 1.964e-123
Identity = 171/214 (79.91%), Postives = 188/214 (87.85%), Query Frame = 0
Query:   63 ALLTGVTGQDGSYLCEFLLEKGYIVHGIIRRSSTFNTHRIEHLYKDRHAAGVRFFLHYGDLTDSTNLTQLISQIRPDEIYNLGAMSHVKVSFQMSEYTADVDGIGALRLLNAVRACGLEKTTRLYQASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYL 276
            AL+TG+TGQDGSYL E LL KGY VHGIIRRSS+FNT RI HLYKD H  GV FFLHYGDLTDS+NL  L++QI+PDEIYNLGA SHVKVSF +SEY+A+VDGIG LRLLNA+R CGL   TRLYQASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+A+WI+ NYREAY MFL NGILFNHESPRRGPTFVTRKITRAVARI+ G+Q  LYL
Sbjct:   16 ALITGITGQDGSYLAELLLSKGYEVHGIIRRSSSFNTGRINHLYKDPHTQGVNFFLHYGDLTDSSNLCGLMAQIQPDEIYNLGAQSHVKVSFDLSEYSAEVDGIGTLRLLNAIRTCGLANKTRLYQASTSELYGKVQEIPQRETTPFYPRSPYGVAKQFAFWIIKNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVARIKLGVQDCLYL 229          
The following BLAST results are available for this feature:
BLAST of EWM25963.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107848|gb|EWM25963.1|0.000e+0100.00gdp-mannose -dehydratase [Nannochloropsis gaditana... [more]
gi|676383345|ref|XP_009034951.1|1.431e-13182.87hypothetical protein AURANDRAFT_23507 [Aureococcus... [more]
gi|676396195|ref|XP_009041375.1|5.861e-12982.79hypothetical protein AURANDRAFT_33270 [Aureococcus... [more]
gi|869116029|gb|AKP06418.1|1.903e-12876.09GDP-D-mannose 4,6-dehydratase [Saccharina japonica... [more]
gi|1032153204|gb|OAO16564.1|2.881e-12778.48gdp-d-mannose 4,6-dehydratase [Blastocystis sp. AT... [more]
gi|299471989|emb|CBN80072.1|9.256e-12779.17gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculo... [more]
gi|855302723|ref|XP_012894519.1|2.568e-12679.45uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|299117431|emb|CBN73934.1|5.796e-12678.70gdp-d-mannose 4,6-dehydratase [Ectocarpus siliculo... [more]
gi|224001660|ref|XP_002290502.1|8.151e-12578.70gdp-d-mannose 4,6-dehydratase [Thalassiosira pseud... [more]
gi|950884241|ref|XP_014525236.1|1.964e-12379.91GDP-mannose dehydratase [Blastocystis sp. subtype ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4723rna4723Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications