EWM25979.1, cds4695 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|585107877|gb|EWM25979.1| (cycloartenol synthase, partial [Nannochloropsis gaditana]) HSP 1 Score: 382.489 bits (981), Expect = 1.737e-134 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query: 1 PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE 186
PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE
Sbjct: 1 PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE 186
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|223995517|ref|XP_002287432.1| (cycloartenol synthase;-2,3-epoxysqualene mutase-like protein [Thalassiosira pseudonana CCMP1335] >gi|220976548|gb|EED94875.1| cycloartenol synthase;-2,3-epoxysqualene mutase-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 172.94 bits (437), Expect = 3.587e-47 Identity = 81/132 (61.36%), Postives = 99/132 (75.00%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYA 178
+GL+ GE P +S+ IQ+ FLLSHQRPNGGWGE + SC DK Y E+G + G+ GSGVV TAW L+AL A C + A+ RGV++LM+RQ E GDW QEGI+GVFNR CGITYT YRN+FP+WALGR A
Sbjct: 542 EGLIKTGE-PTSSSAIQKCCEFLLSHQRPNGGWGEDFTSCYDKDYAENGM-KSYGDDGSGVVNTAWALMALSAANCNNVDAIRRGVQYLMKRQLESGDWPQEGISGVFNRACGITYTAYRNVFPIWALGRCA 671
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|676380417|ref|XP_009033487.1| (hypothetical protein AURANDRAFT_19883, partial [Aureococcus anophagefferens] >gi|323456595|gb|EGB12462.1| hypothetical protein AURANDRAFT_19883, partial [Aureococcus anophagefferens]) HSP 1 Score: 165.236 bits (417), Expect = 2.342e-44 Identity = 80/135 (59.26%), Postives = 94/135 (69.63%), Query Frame = 0
Query: 47 QGLVAAGED----PHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRY 177
+GLV +GED P S P+ +A AFLL HQRPNGGWGE + SC DK+Y + G G+GVV T W LL LMAG C D A+ RGV +L RQ DGDW QEGI+GVFNR+CGITYT YRN+FP+WAL RY
Sbjct: 540 EGLVDSGEDLREDPKTSEPVARACAFLLRHQRPNGGWGEDFTSCFDKAYAKHGMEAYGDAEGAGVVCTGWALLGLMAGACADADAVARGVAYLEARQLPDGDWPQEGISGVFNRSCGITYTAYRNVFPMWALARY 674
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1210522667|dbj|GAX18680.1| (cycloartenol synthase [Fistulifera solaris]) HSP 1 Score: 163.696 bits (413), Expect = 2.311e-43 Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
+GLV GE P S I++A FLL HQR NGGWGE + SC DK Y +G + G+ GSGVV TAW LLAL +C D A+ RGVR+LM+RQ GDW QEGI GVFNR CGITYT YRN+FP+WALGR
Sbjct: 813 EGLVKCGE-PKTSQAIKKACQFLLHHQRRNGGWGEDFTSCYDKDYAANGM-EAYGDDGSGVVNTAWALLALSVAECDDIEAIRRGVRYLMKRQLPCGDWPQEGIAGVFNRACGITYTAYRNVFPIWALGR 940
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|219120893|ref|XP_002185678.1| (acetyl-coenzyme A synthetase, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582527|gb|ACI65148.1| acetyl-coenzyme A synthetase, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 160.229 bits (404), Expect = 1.485e-42 Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
+GLV GE P +S I +A FLL HQR NGGWGE + SC DK Y +G + G+ GSGVV T+W L+AL KC D A++RGV++LM+RQ GDW QEG+ GVFNR CGITYT YRNIFP+WALGR
Sbjct: 553 EGLVKCGE-PVSSEFIAKACKFLLQHQRSNGGWGEDFTSCYDKEYAANGM-EAYGDDGSGVVNTSWALMALSTAKCNDIEAIKRGVQYLMKRQLPCGDWPQEGVAGVFNRACGITYTAYRNIFPIWALGR 680
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1072229081|gb|OEU13816.1| (acetyl-coenzyme A synthetase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 159.844 bits (403), Expect = 2.537e-42 Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREV 181
+GL+ GE P S I +A +LL HQRPNGGWGE + SC DK + +DG GSGVV T+W L+AL KC D A+ RGVR+LMERQ GDW QEGI+GVFNR+ GITYT YRN+FP+WA+GR REV
Sbjct: 552 EGLIKCGE-PVNSPCILKACRYLLMHQRPNGGWGEDFTSCYDKDFAKDGMKAYGDSDGSGVVNTSWALMALSYAKCDDVEAIRRGVRYLMERQLPSGDWPQEGISGVFNRSVGITYTAYRNVFPIWAMGR-CREV 684
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|551676271|ref|XP_005840889.1| (hypothetical protein GUITHDRAFT_63716, partial [Guillardia theta CCMP2712] >gi|428185056|gb|EKX53909.1| hypothetical protein GUITHDRAFT_63716, partial [Guillardia theta CCMP2712]) HSP 1 Score: 142.124 bits (357), Expect = 1.357e-38 Identity = 78/130 (60.00%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 61 PIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQG-------LGEGGSGVVQTAWGLLALMAGKCQ-----DKAALERGVRFLMERQEEDGDWAQ-EGITGVFNRNCGITYTQYRNIFPLWALGRY 177
++ A+ FLLS Q NGGWGESY SCVDK Y DG+ G GGSGVVQTAW LL LMA K A+E+G+++LM Q GDW Q EGITGVFNR+CGITYTQYRNIFPLWALGRY
Sbjct: 130 SVRLAVNFLLSKQNNNGGWGESYRSCVDKVY--DGSEVTSIRLQPCYGRGGSGVVQTAWALLGLMAAKVHLPEEVYVHAVEQGIKYLMSMQTPAGDWEQQEGITGVFNRSCGITYTQYRNIFPLWALGRY 257
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|397582426|gb|EJK52279.1| (hypothetical protein THAOC_28460 [Thalassiosira oceanica]) HSP 1 Score: 149.828 bits (377), Expect = 1.667e-38 Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
+GL AGE H+SA I++ FLLS QRPNGGWGE + SC DK Y G + G+ GSGVV TAW LLAL A KC D A+ RGV++L++RQ + GDW QEGI+GVFNR CGITYT YRN+FP+WALGR
Sbjct: 1074 EGLTKAGES-HSSATIRKCCQFLLSKQRPNGGWGEDFTSCYDKDYARKGM-ECYGDEGSGVVSTAWALLALSAAKCDDVNAVRRGVQYLIDRQLDCGDWPQEGISGVFNRACGITYTAYRNVFPIWALGR 1201
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|298715464|emb|CBJ34051.1| (Cycloartenol synthase [Ectocarpus siliculosus]) HSP 1 Score: 142.51 bits (358), Expect = 3.200e-38 Identity = 76/147 (51.70%), Postives = 97/147 (65.99%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQ------GLGEGGSGVVQTAWGLLALMAGKCQD-----KAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVK 182
+GL++AGE P S I +A+ F+LS Q NGGWGESYL+ VDK + E G LG GGSGVV T W +L L+A + + + AL +G FL + Q GDW QEGITGVFNR+ GITYT YRN++P+WALG+YAR V+
Sbjct: 160 EGLMSAGE-PVESPTITKAVDFMLSRQNANGGWGESYLASVDKGWTETGVQSLQEEVSALGNGGSGVVHTGWAMLTLIASEQWEDREDVRLALWKGSLFLRKMQLPRGDWEQEGITGVFNRSTGITYTSYRNVYPIWALGKYARTVE 305
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1210523926|dbj|GAX17250.1| (cycloartenol synthase [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 3.713e-38 Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0
Query: 47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
+GLV GE P S +++A FLL HQRPNGGWGE + SC DK Y +G + G+ GSGVV TAW LLAL A +C D A+ +GVR+LM+RQ GDW QEGI GVFNR CGITYT YRN+FP+WALGR
Sbjct: 813 EGLVKCGE-PKTSQSVKKACQFLLHHQRPNGGWGEDFTSCYDKDYAANGM-EVYGDDGSGVVNTAWALLALSAAECDDMEAIRKGVRYLMKRQLPCGDWPQEGIAGVFNRACGITYTAYRNVFPIWALGR 940 The following BLAST results are available for this feature:
BLAST of EWM25979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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