EWM25979.1, cds4695 (CDS) Nannochloropsis gaditana

Overview
NameEWM25979.1
Unique Namecds4695
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:125910..126470 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25979.1
Productcycloartenol synthase
Partialtrue
Orig transcript idgnl|cribi|Naga_101364g2.6963.mrna
GbkeyCDS
End range.
End range126470
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:125910..126470 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR008930Terpenoid_cyclase/PrenylTrfase
Homology
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|585107877|gb|EWM25979.1| (cycloartenol synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 1.737e-134
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:    1 PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE 186
            PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE
Sbjct:    1 PSIATFLPEFTRTSFPSLVLHIPPHDPFLFPCLPFFLPLSLPPSLPQGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVKVSKE 186          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|223995517|ref|XP_002287432.1| (cycloartenol synthase;-2,3-epoxysqualene mutase-like protein [Thalassiosira pseudonana CCMP1335] >gi|220976548|gb|EED94875.1| cycloartenol synthase;-2,3-epoxysqualene mutase-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 172.94 bits (437), Expect = 3.587e-47
Identity = 81/132 (61.36%), Postives = 99/132 (75.00%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYA 178
            +GL+  GE P +S+ IQ+   FLLSHQRPNGGWGE + SC DK Y E+G  +  G+ GSGVV TAW L+AL A  C +  A+ RGV++LM+RQ E GDW QEGI+GVFNR CGITYT YRN+FP+WALGR A
Sbjct:  542 EGLIKTGE-PTSSSAIQKCCEFLLSHQRPNGGWGEDFTSCYDKDYAENGM-KSYGDDGSGVVNTAWALMALSAANCNNVDAIRRGVQYLMKRQLESGDWPQEGISGVFNRACGITYTAYRNVFPIWALGRCA 671          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|676380417|ref|XP_009033487.1| (hypothetical protein AURANDRAFT_19883, partial [Aureococcus anophagefferens] >gi|323456595|gb|EGB12462.1| hypothetical protein AURANDRAFT_19883, partial [Aureococcus anophagefferens])

HSP 1 Score: 165.236 bits (417), Expect = 2.342e-44
Identity = 80/135 (59.26%), Postives = 94/135 (69.63%), Query Frame = 0
Query:   47 QGLVAAGED----PHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRY 177
            +GLV +GED    P  S P+ +A AFLL HQRPNGGWGE + SC DK+Y + G        G+GVV T W LL LMAG C D  A+ RGV +L  RQ  DGDW QEGI+GVFNR+CGITYT YRN+FP+WAL RY
Sbjct:  540 EGLVDSGEDLREDPKTSEPVARACAFLLRHQRPNGGWGEDFTSCFDKAYAKHGMEAYGDAEGAGVVCTGWALLGLMAGACADADAVARGVAYLEARQLPDGDWPQEGISGVFNRSCGITYTAYRNVFPMWALARY 674          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1210522667|dbj|GAX18680.1| (cycloartenol synthase [Fistulifera solaris])

HSP 1 Score: 163.696 bits (413), Expect = 2.311e-43
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
            +GLV  GE P  S  I++A  FLL HQR NGGWGE + SC DK Y  +G  +  G+ GSGVV TAW LLAL   +C D  A+ RGVR+LM+RQ   GDW QEGI GVFNR CGITYT YRN+FP+WALGR
Sbjct:  813 EGLVKCGE-PKTSQAIKKACQFLLHHQRRNGGWGEDFTSCYDKDYAANGM-EAYGDDGSGVVNTAWALLALSVAECDDIEAIRRGVRYLMKRQLPCGDWPQEGIAGVFNRACGITYTAYRNVFPIWALGR 940          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|219120893|ref|XP_002185678.1| (acetyl-coenzyme A synthetase, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582527|gb|ACI65148.1| acetyl-coenzyme A synthetase, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 160.229 bits (404), Expect = 1.485e-42
Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
            +GLV  GE P +S  I +A  FLL HQR NGGWGE + SC DK Y  +G  +  G+ GSGVV T+W L+AL   KC D  A++RGV++LM+RQ   GDW QEG+ GVFNR CGITYT YRNIFP+WALGR
Sbjct:  553 EGLVKCGE-PVSSEFIAKACKFLLQHQRSNGGWGEDFTSCYDKEYAANGM-EAYGDDGSGVVNTSWALMALSTAKCNDIEAIKRGVQYLMKRQLPCGDWPQEGVAGVFNRACGITYTAYRNIFPIWALGR 680          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1072229081|gb|OEU13816.1| (acetyl-coenzyme A synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 159.844 bits (403), Expect = 2.537e-42
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREV 181
            +GL+  GE P  S  I +A  +LL HQRPNGGWGE + SC DK + +DG        GSGVV T+W L+AL   KC D  A+ RGVR+LMERQ   GDW QEGI+GVFNR+ GITYT YRN+FP+WA+GR  REV
Sbjct:  552 EGLIKCGE-PVNSPCILKACRYLLMHQRPNGGWGEDFTSCYDKDFAKDGMKAYGDSDGSGVVNTSWALMALSYAKCDDVEAIRRGVRYLMERQLPSGDWPQEGISGVFNRSVGITYTAYRNVFPIWAMGR-CREV 684          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|551676271|ref|XP_005840889.1| (hypothetical protein GUITHDRAFT_63716, partial [Guillardia theta CCMP2712] >gi|428185056|gb|EKX53909.1| hypothetical protein GUITHDRAFT_63716, partial [Guillardia theta CCMP2712])

HSP 1 Score: 142.124 bits (357), Expect = 1.357e-38
Identity = 78/130 (60.00%), Postives = 88/130 (67.69%), Query Frame = 0
Query:   61 PIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQG-------LGEGGSGVVQTAWGLLALMAGKCQ-----DKAALERGVRFLMERQEEDGDWAQ-EGITGVFNRNCGITYTQYRNIFPLWALGRY 177
             ++ A+ FLLS Q  NGGWGESY SCVDK Y  DG+           G GGSGVVQTAW LL LMA K          A+E+G+++LM  Q   GDW Q EGITGVFNR+CGITYTQYRNIFPLWALGRY
Sbjct:  130 SVRLAVNFLLSKQNNNGGWGESYRSCVDKVY--DGSEVTSIRLQPCYGRGGSGVVQTAWALLGLMAAKVHLPEEVYVHAVEQGIKYLMSMQTPAGDWEQQEGITGVFNRSCGITYTQYRNIFPLWALGRY 257          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|397582426|gb|EJK52279.1| (hypothetical protein THAOC_28460 [Thalassiosira oceanica])

HSP 1 Score: 149.828 bits (377), Expect = 1.667e-38
Identity = 80/130 (61.54%), Postives = 96/130 (73.85%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
            +GL  AGE  H+SA I++   FLLS QRPNGGWGE + SC DK Y   G  +  G+ GSGVV TAW LLAL A KC D  A+ RGV++L++RQ + GDW QEGI+GVFNR CGITYT YRN+FP+WALGR
Sbjct: 1074 EGLTKAGES-HSSATIRKCCQFLLSKQRPNGGWGEDFTSCYDKDYARKGM-ECYGDEGSGVVSTAWALLALSAAKCDDVNAVRRGVQYLIDRQLDCGDWPQEGISGVFNRACGITYTAYRNVFPIWALGR 1201          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|298715464|emb|CBJ34051.1| (Cycloartenol synthase [Ectocarpus siliculosus])

HSP 1 Score: 142.51 bits (358), Expect = 3.200e-38
Identity = 76/147 (51.70%), Postives = 97/147 (65.99%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQ------GLGEGGSGVVQTAWGLLALMAGKCQD-----KAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGRYAREVK 182
            +GL++AGE P  S  I +A+ F+LS Q  NGGWGESYL+ VDK + E G          LG GGSGVV T W +L L+A +  +     + AL +G  FL + Q   GDW QEGITGVFNR+ GITYT YRN++P+WALG+YAR V+
Sbjct:  160 EGLMSAGE-PVESPTITKAVDFMLSRQNANGGWGESYLASVDKGWTETGVQSLQEEVSALGNGGSGVVHTGWAMLTLIASEQWEDREDVRLALWKGSLFLRKMQLPRGDWEQEGITGVFNRSTGITYTSYRNVYPIWALGKYARTVE 305          
BLAST of EWM25979.1 vs. NCBI_GenBank
Match: gi|1210523926|dbj|GAX17250.1| (cycloartenol synthase [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 3.713e-38
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0
Query:   47 QGLVAAGEDPHASAPIQQALAFLLSHQRPNGGWGESYLSCVDKSYPEDGTGQGLGEGGSGVVQTAWGLLALMAGKCQDKAALERGVRFLMERQEEDGDWAQEGITGVFNRNCGITYTQYRNIFPLWALGR 176
            +GLV  GE P  S  +++A  FLL HQRPNGGWGE + SC DK Y  +G  +  G+ GSGVV TAW LLAL A +C D  A+ +GVR+LM+RQ   GDW QEGI GVFNR CGITYT YRN+FP+WALGR
Sbjct:  813 EGLVKCGE-PKTSQSVKKACQFLLHHQRPNGGWGEDFTSCYDKDYAANGM-EVYGDDGSGVVNTAWALLALSAAECDDMEAIRKGVRYLMKRQLPCGDWPQEGIAGVFNRACGITYTAYRNVFPIWALGR 940          
The following BLAST results are available for this feature:
BLAST of EWM25979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107877|gb|EWM25979.1|1.737e-134100.00cycloartenol synthase, partial [Nannochloropsis ga... [more]
gi|223995517|ref|XP_002287432.1|3.587e-4761.36cycloartenol synthase;-2,3-epoxysqualene mutase-li... [more]
gi|676380417|ref|XP_009033487.1|2.342e-4459.26hypothetical protein AURANDRAFT_19883, partial [Au... [more]
gi|1210522667|dbj|GAX18680.1|2.311e-4360.77cycloartenol synthase [Fistulifera solaris][more]
gi|219120893|ref|XP_002185678.1|1.485e-4259.23acetyl-coenzyme A synthetase, partial [Phaeodactyl... [more]
gi|1072229081|gb|OEU13816.1|2.537e-4257.78acetyl-coenzyme A synthetase [Fragilariopsis cylin... [more]
gi|551676271|ref|XP_005840889.1|1.357e-3860.00hypothetical protein GUITHDRAFT_63716, partial [Gu... [more]
gi|397582426|gb|EJK52279.1|1.667e-3861.54hypothetical protein THAOC_28460 [Thalassiosira oc... [more]
gi|298715464|emb|CBJ34051.1|3.200e-3851.70Cycloartenol synthase [Ectocarpus siliculosus][more]
gi|1210523926|dbj|GAX17250.1|3.713e-3860.77cycloartenol synthase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4707rna4707Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications