EWM30352.1, cds469 (CDS) Nannochloropsis gaditana

Overview
NameEWM30352.1
Unique Namecds469
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1172487..1172539 +
Alignment locationCM002455.1:1172680..1173044 +
Alignment locationCM002455.1:1173215..1173417 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30352.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g6.1869.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1172487..1172539 +
CM002455.1supercontigCM002455.1:1172680..1173044 +
CM002455.1supercontigCM002455.1:1173215..1173417 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|585113011|gb|EWM30352.1| (hypothetical protein Naga_100003g6 [Nannochloropsis gaditana])

HSP 1 Score: 422.935 bits (1086), Expect = 7.735e-150
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206
            MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM
Sbjct:    1 MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|553178974|ref|XP_005852630.1| (hypothetical protein NGA_0731210 [Nannochloropsis gaditana CCMP526] >gi|422295904|gb|EKU23203.1| hypothetical protein NGA_0731210 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 419.468 bits (1077), Expect = 1.765e-148
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0
Query:    1 MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206
            MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQE+GRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDR HGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM
Sbjct:    1 MPALLASTQHPSDHIHLRFIFANHDGVSVELSVPLGIRVSELKSRLREAWPEELHTDTSSGGGVSSGNQGTCFDYCSCSPEYDEEGEDRSDSEAEEDYQEKGRAIQAGVSPPRIKAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDREHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|673035304|ref|XP_008871613.1| (hypothetical protein H310_07878 [Aphanomyces invadans] >gi|574472833|gb|ETV99837.1| hypothetical protein H310_07878 [Aphanomyces invadans])

HSP 1 Score: 67.3958 bits (163), Expect = 3.760e-11
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0
Query:   83 DEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPE-VARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRP 159
            ++EG   + +   + +  E +     + PP +  PE +  +R ICMG G+L+DT TL EC++P F  HPTPVNVSI P
Sbjct:   12 NKEGVKITLATTRDQHVSEVKTQLLALWPPGLAKPEAITSIRLICMGLGVLQDTKTLVECKVPIFPGHPTPVNVSILP 89          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|298712416|emb|CBJ33195.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 7.298e-11
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0
Query:  118 EVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGL 188
            +++ +R +CMG G+L D  +L ECR+P FD HPTPVNV+IRP   + P+ G R H  K+  +   +D GG+
Sbjct:   65 DLSHVRLVCMGFGILPDAKSLTECRVPHFDAHPTPVNVAIRPKNIQVPQSGWRLH--KQSSRLPWQDWGGV 133          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|698804612|ref|XP_009835335.1| (hypothetical protein H257_10471 [Aphanomyces astaci] >gi|574109785|gb|ETV75287.1| hypothetical protein H257_10471 [Aphanomyces astaci])

HSP 1 Score: 63.5438 bits (153), Expect = 1.031e-9
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0
Query:   83 DEEGEDRSDSEAEEDYQEEGRAIQAGVSPPRIKAPE-VARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRP 159
            ++EG   + +   + +  + +     V P  +  PE +  +R ICMG G+L+DT TL EC++P F  HPTPVNVSI P
Sbjct:   12 NKEGVKITLASTRDKHVSDVKQQLLAVWPADLAKPESLTSIRLICMGLGVLQDTKTLVECKVPIFPGHPTPVNVSILP 89          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|1173947735|gb|OQR95936.1| (hypothetical protein THRCLA_22047 [Thraustotheca clavata])

HSP 1 Score: 62.7734 bits (151), Expect = 2.596e-9
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0
Query:  111 PPRIKAPE-VARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKT 180
            P  +  PE ++ +RFICMG G L+D  TL+EC++P F THPTPVNVS+ P+     +H  + H Q +  +T
Sbjct:   42 PEDVPRPESISNIRFICMGLGALQDGKTLRECKVPSFPTHPTPVNVSVTPS-----KHPVQQHTQSEGGRT 107          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|635370863|emb|CCI40940.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 61.6178 bits (148), Expect = 6.058e-9
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 0
Query:  115 KAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLGEDVGGLDGTRGSSLPTACVSCSIM 206
            +A +V+++RFICMG+GLL+D  TL   RIP F THPTP+NV +            R +    KK +   +V  +   R ++ P  C +C +M
Sbjct:   44 RAQDVSQIRFICMGRGLLQDRQTLSSARIPSFPTHPTPINVVV------------RSNVLAAKKDSTARNVAAI---RTATSPIDC-NCVMM 119          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|325186448|emb|CCA20953.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 60.8474 bits (146), Expect = 1.332e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0
Query:  111 PPRI-KAPEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIR 158
            PP + K   V+++RFICMG+GLL+D  TL   RIP F THPTP+NV +R
Sbjct:   42 PPDVPKVDNVSQIRFICMGRGLLQDRQTLSSARIPSFPTHPTPINVVVR 90          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|219119915|ref|XP_002180708.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408181|gb|EEC48116.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 62.3882 bits (150), Expect = 2.002e-8
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:  121 RLRFICMGQG-LLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQK-KKKKTLGEDVGGLDGTRGSSLPT 198
            R+R ICMG+G L+ DT TL++C+IP F THPTPVNVS+ P         +  HG+K  +KK      GG   T  +  PT
Sbjct:  124 RVRLICMGKGYLMPDTRTLEDCQIPVFKTHPTPVNVSVLPV----DNAVEEAHGKKDTRKKKESTHTGGHARTNAARSPT 199          
BLAST of EWM30352.1 vs. NCBI_GenBank
Match: gi|675175633|ref|XP_008896701.1| (hypothetical protein PPTG_05006 [Phytophthora parasitica INRA-310] >gi|566011759|gb|ETI34670.1| hypothetical protein F443_18854 [Phytophthora parasitica P1569] >gi|567949285|gb|ETK75017.1| hypothetical protein L915_18316 [Phytophthora parasitica] >gi|567977946|gb|ETL28440.1| hypothetical protein L916_18223 [Phytophthora parasitica] >gi|568007451|gb|ETL81690.1| hypothetical protein L917_18041 [Phytophthora parasitica] >gi|568037309|gb|ETM34895.1| hypothetical protein L914_18127 [Phytophthora parasitica] >gi|568102441|gb|ETN17112.1| hypothetical protein PPTG_05006 [Phytophthora parasitica INRA-310] >gi|570315520|gb|ETO63468.1| hypothetical protein F444_18843 [Phytophthora parasitica P1976] >gi|570939313|gb|ETP04570.1| hypothetical protein F441_18697 [Phytophthora parasitica CJ01A1] >gi|570969576|gb|ETP32695.1| hypothetical protein F442_18670 [Phytophthora parasitica P10297] >gi|970618747|gb|KUF66795.1| hypothetical protein AM587_10013580 [Phytophthora nicotianae] >gi|970649273|gb|KUF88588.1| hypothetical protein AM587_10016020 [Phytophthora nicotianae])

HSP 1 Score: 58.9214 bits (141), Expect = 6.338e-8
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0
Query:  116 APEVARLRFICMGQGLLRDTCTLQECRIPCFDTHPTPVNVSIRPAPPRPPRHGDRGHGQKKKKKTLG 182
            A +   +R ICMG+G+L+DT TL    +P FDTHPTPVNVS+     +  R   RGH   K  ++ G
Sbjct:   50 AEDAKSVRLICMGRGILQDTHTLGSA-VPAFDTHPTPVNVSVFHKSQQAVREPTRGHATAKTVESAG 115          
The following BLAST results are available for this feature:
BLAST of EWM30352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113011|gb|EWM30352.1|7.735e-150100.00hypothetical protein Naga_100003g6 [Nannochloropsi... [more]
gi|553178974|ref|XP_005852630.1|1.765e-14899.03hypothetical protein NGA_0731210 [Nannochloropsis ... [more]
gi|673035304|ref|XP_008871613.1|3.760e-1141.03hypothetical protein H310_07878 [Aphanomyces invad... [more]
gi|298712416|emb|CBJ33195.1|7.298e-1145.07conserved unknown protein [Ectocarpus siliculosus][more]
gi|698804612|ref|XP_009835335.1|1.031e-939.74hypothetical protein H257_10471 [Aphanomyces astac... [more]
gi|1173947735|gb|OQR95936.1|2.596e-945.07hypothetical protein THRCLA_22047 [Thraustotheca c... [more]
gi|635370863|emb|CCI40940.1|6.058e-936.96unnamed protein product [Albugo candida][more]
gi|325186448|emb|CCA20953.1|1.332e-857.14conserved hypothetical protein [Albugo laibachii N... [more]
gi|219119915|ref|XP_002180708.1|2.002e-845.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|675175633|ref|XP_008896701.1|6.338e-844.78hypothetical protein PPTG_05006 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna469rna469Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications